View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404-Insertion-5 (Length: 501)
Name: NF4404-Insertion-5
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 11 - 501
Target Start/End: Complemental strand, 34819097 - 34818606
Alignment:
| Q |
11 |
aataccctactca-ggagccaatcctctcgaaaggtaaaaacaagagtcaagagaagaaagcatccaacattttggaatagtagttgccaccctcttgag |
109 |
Q |
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| T |
34819097 |
aataccctactcaaggagccaatcctctcgaaaggtaaaaacaagagtcaagagaagaaagcatccaacattttggaatagtagctgccaccctcttgag |
34818998 |
T |
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| Q |
110 |
atgactccattcaagacttgcctaagaaaaaatgaacttagtctcatggcagccaggcagctggcactagacacaagacttcttcctaaacaatacagaa |
209 |
Q |
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| T |
34818997 |
atgactccattcaagacttgcctaagaaaaaatgaacttagtctcatggcagccaggcagctggcactagacacaagacttcttcctaaacaatacagaa |
34818898 |
T |
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| Q |
210 |
atcatactccatcaagaagaaatttgtctttccaatgctcacaagaagaaatttcatgcaacgtttcatgcaaccattggtgacattactatgcagttat |
309 |
Q |
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| T |
34818897 |
atcatactccatcaagaagaaatttgtctttccaatgctcacaagaagaaatttcatgcaacgtttcatgcaaccattggtgacattactatgcagttat |
34818798 |
T |
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| Q |
310 |
agttctagacatgtcaaacttaagtgatatgttgactttacattaaatatatataattcaaggcaatgtaatcaatgagtacatttannnnnnnggtcac |
409 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34818797 |
agttctggacatgtcaaacttaagtgatatgttgactttacattaaatatatataattcaaggcaatgtaatcaatgagtacatttatttttttggtcat |
34818698 |
T |
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| Q |
410 |
atagtcctttccaccggaattgtaatcctatttgaattttgaagcataattgtaattcagatgctaaaattggacatatgtctctggcgtaa |
501 |
Q |
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| T |
34818697 |
atagtcctttccaccggaattgtgatcctatttgaattttgaagcataattgtaattcagatgctaaaattggacatctgtctccggcgtaa |
34818606 |
T |
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