View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404-Insertion-8 (Length: 206)
Name: NF4404-Insertion-8
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 3857504 - 3857673
Alignment:
| Q |
8 |
gaaatcatcattgaaaattcatcatgtcaaagataattgtaaaaagtttgaatgtacaaatattgagaagacaaccattcagtcatttgagtatgaggat |
107 |
Q |
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| T |
3857504 |
gaaatcatcattgaaaattcatcatgtcaaagataattgtaaaaagtttgaatgtacaaatattgagaagacagccattcagtcatttgagtatgaggat |
3857603 |
T |
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| Q |
108 |
gcaatcaaatattttcaacctatgaactctcttggcttatacacatcacaaatacaagtgaaaggtgatg |
177 |
Q |
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| T |
3857604 |
gcaatcaaatattttcaacctatgaactctcttggcttatacacatcacaaatacaagtgaaaggtgatg |
3857673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 3866261 - 3866430
Alignment:
| Q |
8 |
gaaatcatcattgaaaattcatcatgtcaaagataattgtaaaaagtttgaatgtacaaatattgagaagacaaccattcagtcatttgagtatgaggat |
107 |
Q |
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| T |
3866261 |
gaaatcatcattgaaaattcatcatgtcaaagataattgtaaaaagtttgaatgtacaaatattgagaagacagccattcagtcatttgagtatgaggat |
3866360 |
T |
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| Q |
108 |
gcaatcaaatattttcaacctatgaactctcttggcttatacacatcacaaatacaagtgaaaggtgatg |
177 |
Q |
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| T |
3866361 |
gcaatcaaatattttcaacctatgaactctcttggcttatacacatcacaaatacaagtgaaaggtgatg |
3866430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 5440537 - 5440458
Alignment:
| Q |
53 |
gtttgaatgtacaaatattgagaagacaaccattcagtcatttgagtatgaggatgcaatcaaatattttcaacctatga |
132 |
Q |
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| T |
5440537 |
gtttgaatgtacaaatatagagaagacagttatccggtcatttcagcctgagaatgcaatcaaatcttttccacctatga |
5440458 |
T |
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