View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4404_high_11 (Length: 294)
Name: NF4404_high_11
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 45230055 - 45229778
Alignment:
| Q |
1 |
aagtgcattttagc-ttaaagtaaatgatgaaactgaaaagcaccaagtaaattatctttaattacatagggaataaccattagaaccagataaaatata |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45230055 |
aagtgcattttagccttaaagtaaatgatgaaactgaaaagcactaagtaaattatctttaattacatagggaataaccattagatccagataaaatata |
45229956 |
T |
|
| Q |
100 |
aaattacaaaaatttacagaaagttcaactcttgattaaaaagagctgccagtaatcaatgtcaaacatagcaatgagtcgtacccccacaaagacgtaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45229955 |
aaattacaaaaatttacagaaagttcaactcttgattaaaaagagctgccagtaatcaatgtcaaacatagcaatgagtcgtacccccacaaagacgtaa |
45229856 |
T |
|
| Q |
200 |
gttcaactccgccagcattgggacttgttggcggtgtaatctgctataatccttaaggcctaccctgaactggtaagt |
277 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45229855 |
gttcaactccgccagcattgggactcgttggcggtgcaatctgctataatccttaaggcctaccctgaactggtaagt |
45229778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University