View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4404_high_12 (Length: 274)

Name: NF4404_high_12
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4404_high_12
NF4404_high_12
[»] chr2 (2 HSPs)
chr2 (1-274)||(17447766-17448039)
chr2 (130-246)||(17445490-17445606)
[»] chr6 (12 HSPs)
chr6 (58-249)||(33414567-33414758)
chr6 (58-249)||(33269540-33269735)
chr6 (58-249)||(33395051-33395244)
chr6 (79-249)||(33258215-33258386)
chr6 (1-205)||(33278873-33279068)
chr6 (82-249)||(31564950-31565117)
chr6 (71-186)||(33384041-33384156)
chr6 (177-249)||(33293092-33293164)
chr6 (98-236)||(33406911-33407049)
chr6 (116-236)||(33280362-33280482)
chr6 (133-236)||(33395858-33395961)
chr6 (58-114)||(33293020-33293076)
[»] scaffold0428 (3 HSPs)
scaffold0428 (79-249)||(2336-2507)
scaffold0428 (29-205)||(15185-15352)
scaffold0428 (116-236)||(13771-13891)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 17448039 - 17447766
Alignment:
Q  1 accaccttcatcgcagatttgtttgtacgacactcactttgttcctgatataatttttgaacctgtggaaaagcagccacttgcattgcaagatcatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17448039 accaccttcatcgcagatttgtttgtacgacactcactttgttcctgatataatttttgaacctgtggaaaagcagccacttgcattgcaagatcatcaa 17447940  T
Q  101 ccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcatcgtgaatgtatgtaccgattct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17447939 ccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcatcgtgaatgtatgtaccgattct 17447840  T
Q  201 tccttcagctgccagtcttccggatttcttatcagcggatgagagacccnnnnnnnctgaggtatgcttgcgcc 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  17447839 tccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttctgaggtatgcttgcgcc 17447766  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 17445606 - 17445490
Alignment:
Q  130 acaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttct 229  Q
    ||||||| ||||||| |||||  |||||||||| ||||| ||| ||  || |||||| ||||||||||| ||| ||||| ||| || || |||||||| |    
T  17445606 acaaagttggtttcacagttcccttcaattagaacaccgttgcatgagtcatgaatgaatgtaccgatttttctttcagttgctagcctgccggatttat 17445507  T
Q  230 tatcagcggatgagaga 246  Q
    |  |||| |||||||||    
T  17445506 tgccagctgatgagaga 17445490  T

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Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 58 - 249
Target Start/End: Original strand, 33414567 - 33414758
Alignment:
Q  58 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaa 157  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| |||||| |||||    
T  33414567 tgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaa 33414666  T
Q  158 ttagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccc 249  Q
    ||||| |||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33414667 ttagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccc 33414758  T

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Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 58 - 249
Target Start/End: Original strand, 33269540 - 33269735
Alignment:
Q  58 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaa 157  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| |||||| |||||    
T  33269540 tgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaa 33269639  T
Q  158 ttagaccaccgatgcgtgcatcgtgaatg----tatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccc 249  Q
    ||||| ||||||||| ||||| |||||||    ||||||||||||||| |||||||||| |||||| | || ||||||||||||||||||||||||    
T  33269640 ttagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagagaccc 33269735  T

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Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 58 - 249
Target Start/End: Original strand, 33395051 - 33395244
Alignment:
Q  58 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctg--ccaacaaagtcggtttcaaagttcaattc 155  Q
    |||||||||||| ||||||||  |||||||| ||||||| ||||||||||||||||||| || ||||||  |||||||||||||||||| |||||| |||    
T  33395051 tgaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttc 33395150  T
Q  156 aattagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccc 249  Q
    ||| ||| ||  |||||||||||||| ||||||| |||||||||||||||||||||| || || ||||||||||| ||||| ||||||||||||    
T  33395151 aatcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagaccc 33395244  T

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Target: chr6; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 33258215 - 33258386
Alignment:
Q  79 acttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcat 178  Q
    ||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||  ||||| |||||||||| |||| ||| ||| ||    
T  33258215 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 33258314  T
Q  179 cgtgaatg-tatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccc 249  Q
    || || || ||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||||||||    
T  33258315 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc 33258386  T

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Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 33278873 - 33279068
Alignment:
Q  1 accaccttcatcgcagatttgtttgtacgacactcactttgttcctgatataatttttgaacctgtggaaaagcagccacttgcattgcaagatcatcaa 100  Q
    |||||||||| |||| |||||||| || |||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| ||||||     
T  33278873 accaccttcaccgcatatttgtttatatgacactcactttgttcctaatataatttttgaacctgtggaataccagccacttgcattgcaagttcatca- 33278971  T
Q  101 ccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcatcgtgaatgtatgtaccgattct 200  Q
            |||||| |||  ||||||||| |||||||||||||| |||| | |||||||||| ||| |||| ||| |||||||||||||||||| |||||    
T  33278972 --------ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattct 33279063  T

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Target: chr6; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 82 - 249
Target Start/End: Complemental strand, 31565117 - 31564950
Alignment:
Q  82 tgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcatcgt 181  Q
    |||||||||||||||| |||||||||||||||| |||| ||||| || | |||||| |||||| | |||| |||||||||| |||  ||||||| |||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  182 gaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccc 249  Q
    ||||||||||||||||||||||||||||  |  |||||||||||||||| ||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccc 31564950  T

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Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 33384041 - 33384156
Alignment:
Q  71 aagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgat 170  Q
    |||||||||||||||||||||||||||||||||||||||| | | |||| |||||||| ||||||||||||| | |||||| |||||||||| |||||||    
T  33384041 aagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgat 33384140  T
Q  171 gcgtgcatcgtgaatg 186  Q
    | ||| || |||||||    
T  33384141 gtgtgaatagtgaatg 33384156  T

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Target: chr6; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 33293092 - 33293164
Alignment:
Q  177 atcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccc 249  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||||    
T  33293092 atcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagaccc 33293164  T

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Target: chr6; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 33406911 - 33407049
Alignment:
Q  98 caaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcatcgtgaatgtatgtaccgat 197  Q
    |||||||||||| ||||  ||| |||||||||||||||||||||||| |||||| | |||||| | |||  |||| |  || || ||| ||||||||| |    
T  33406911 caaccaactcctcgaattgctcacttctgccaacaaagtcggtttcatagttcactacaattataacactaatgcataaattgtcaatatatgtaccggt 33407010  T
Q  198 tcttccttcagctgccagtcttccggatttcttatcagc 236  Q
    | |||| || ||||| ||||||| |||||||||||||||    
T  33407011 ttttccatcggctgctagtcttctggatttcttatcagc 33407049  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 33280362 - 33280482
Alignment:
Q  116 tctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccag 215  Q
    |||| |||||||||| |||||| || ||| |||| | ||||| ||||  ||| ||||||| |||||||||||| |||| ||||| ||||||||||   |     
T  33280362 tctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagcttttaa 33280461  T
Q  216 tcttccggatttcttatcagc 236  Q
    ||||||||||||||| |||||    
T  33280462 tcttccggatttcttgtcagc 33280482  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 33395858 - 33395961
Alignment:
Q  133 aagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttat 232  Q
    |||||||||||| |||||||||||| |||| |||  |||| || || |||||| ||||||||| || ||||||| ||||  |||||||  ||||||||||    
T  33395858 aagtcggtttcatagttcaattcaactagaacactaatgcatgaattgtgaatttatgtaccggtttttccttcggctgttagtcttctcgatttcttat 33395957  T
Q  233 cagc 236  Q
    ||||    
T  33395958 cagc 33395961  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 33293020 - 33293076
Alignment:
Q  58 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaat 114  Q
    ||||||||  ||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  33293020 tgaacctgaagaatagcagcaacttgcattgcaagatcattaaccaactccttgaat 33293076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 2336 - 2507
Alignment:
Q  79 acttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcat 178  Q
    ||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||  ||||| |||||||||| |||| ||| ||| ||    
T  2336 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 2435  T
Q  179 cgtgaatg-tatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccc 249  Q
    || || || ||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||||||||    
T  2436 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc 2507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 15352 - 15185
Alignment:
Q  29 gacactcactttgttcctgatataatttttgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgcc 128  Q
    |||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| ||||||         |||||| |||  ||||||||    
T  15352 gacactcactttgttcctaatataatttttgaacctgtggaataccagccacttgcattgcaagttcatca---------ttgaatttctaacttctgcc 15262  T
Q  129 aacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttcctt 205  Q
    | |||||||||||||| |||| | |||||||||| ||| |||| ||| |||||||||||||||||| ||||||||||    
T  15261 atcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctt 15185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 13891 - 13771
Alignment:
Q  116 tctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccag 215  Q
    |||| |||||||||| |||||| || ||| |||| | ||||| ||||  ||| ||||||| |||||||||||| |||| ||||| ||||||||||   |     
T  13891 tctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagcttttaa 13792  T
Q  216 tcttccggatttcttatcagc 236  Q
    ||||||||||||||| |||||    
T  13791 tcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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