View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_high_14 (Length: 240)
Name: NF4404_high_14
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 42845580 - 42845356
Alignment:
| Q |
18 |
tgaggaaccacttgatgaggctttaacgatgacagaattataacagtttgcttcaagaactttagagttaggggtcattttcaaattacaatcattgcat |
117 |
Q |
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| T |
42845580 |
tgaggaaccacttgatgaggctttaacgatgacagaattataacagtttgcttcaagaactttagagttaggggtcattttcaaattacaatcattgcat |
42845481 |
T |
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| Q |
118 |
cgcgtcatgattacttctaaggattgaccatatgaatctttaaaattctctgttggattgcttatcttacagttg--acttcttgtaactgggtcgaact |
215 |
Q |
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| T |
42845480 |
tgcgtcatgattacttctaaggattgaccatatgaatctttaaaattctctgttagattgcttatcttacagttgacacttcttgtaactgggtcgaact |
42845381 |
T |
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| Q |
216 |
tatcattcctaaaagcttaccgaat |
240 |
Q |
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| T |
42845380 |
tgtcattcctaaaagtttaccgaat |
42845356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 41979412 - 41979316
Alignment:
| Q |
139 |
gattgaccatatgaatctttaaaattctctgttggattgcttatcttacagttgacttcttgtaactgggtcgaacttatcattcctaaaagcttac |
235 |
Q |
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| T |
41979412 |
gattgaccatataaatctctcaaattctcagttggattgcttctctgactgttaacttcatgtaactgggtcgaatttgccattcctaaaagcttac |
41979316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 41979596 - 41979474
Alignment:
| Q |
18 |
tgaggaaccacttgatgaggctttaacgatgacagaattataacagtttgcttcaagaactttagagttaggggtcattttcaaattacaatcattgcat |
117 |
Q |
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| T |
41979596 |
tgaggagccacttgatgaggcttcaacattgagagggttatagaagttgacttcatggacttcagagttgggggtcattttcaaattatggccattgaat |
41979497 |
T |
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| Q |
118 |
cgcgtcatgattacttctaagga |
140 |
Q |
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| T |
41979496 |
tgcttcatgattgcttctaagga |
41979474 |
T |
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