View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_high_15 (Length: 240)
Name: NF4404_high_15
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 8558133 - 8558300
Alignment:
| Q |
2 |
agagagattcctataatattttttcacaatcatgcaaaagggaattctaagtttcgaatg-------aattgacgtaaaagcaag-accaaaaatgttga |
93 |
Q |
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| T |
8558133 |
agagagattcctatcatattttttcacaatcatgcaaaagggaattctaagtttcgaatgctaaatgaattgacgtaaaagcaaggaccaaaaatgttga |
8558232 |
T |
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| Q |
94 |
tggaaaacttttagtt---taaaacaaaaagttgacttttttacaactcatcagcgttgacttaatat |
158 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8558233 |
tggaaaacttttagttgactaaaacaaaaagttgacttttttacaactcatcagcgttgacttgatat |
8558300 |
T |
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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 8558371 - 8558453
Alignment:
| Q |
158 |
tgccattcttctatttatttttcttaaacggcaaagacaaatgataatataataatctatgcacaagacgtgtctagaagcaa |
240 |
Q |
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| T |
8558371 |
tgccattcttctatttatttttcttaaacggcaaagacaaatgataatataataatctatgcacaagacgtgtctagaagcaa |
8558453 |
T |
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