View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_high_16 (Length: 239)
Name: NF4404_high_16
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41691596 - 41691818
Alignment:
| Q |
1 |
ccacattccttaaaatgtgaagcattatgttttatgatgaataattcttatatcagcacattgttccttttagttatatgttaatacaaacaactttaac |
100 |
Q |
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| T |
41691596 |
ccacattccttaaaatgtgaagcattatgttttatgatgaataattcttatatcagcacattgttccttttagttatatgttaatacaaacaactttaac |
41691695 |
T |
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| Q |
101 |
tttttgattggttaatgtgtataaataaatgtcctcaagcattatttaaatccatgaatcttaaaatgatatgaaaatatgattgcattgtttgtaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41691696 |
tttttgattggttaatgtgtataaataaatgtcctcaagcattatttaaatccatgaatcttaaaatgatatgaaaatatgattgcattgtttgtaagaa |
41691795 |
T |
|
| Q |
201 |
acttgaaatggagaaacagaatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
41691796 |
acttgaaatggagaaacagaatg |
41691818 |
T |
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