View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_high_2 (Length: 771)
Name: NF4404_high_2
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 16 - 653
Target Start/End: Complemental strand, 25718388 - 25717748
Alignment:
| Q |
16 |
agaagagtgtaacaaactggtcaaaactttcaagacttattgagaagctactttggtttatataactcaagtcaaaagctggtgctaagctgaaagaata |
115 |
Q |
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| T |
25718388 |
agaagagtgtaacaaactggtcaaaactttcaagacttgttgagaagctgctttggtttatataacacaagtcaaaagttggtgctaagctgaaagaata |
25718289 |
T |
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| Q |
116 |
aatgtagaaaaataagctgtgaactcaaataccacacatgtcactgtcatgaatagttagaaattttaaacaagtaatagcaggtcaatatttaactata |
215 |
Q |
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| T |
25718288 |
aatgtagaaaaataagctgtgaactcaaataccacacatgtcactgtcatgaatagttagaaattttaaacaagtaatagcaggtcaatatttaactata |
25718189 |
T |
|
| Q |
216 |
actaacaacttatgaagactcacaaattaaggttctcttgtagcaatccaactatttacttgatatgaagaatggttaggactgagaggatatatatagt |
315 |
Q |
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| T |
25718188 |
actaacaacttatgaagactcacaaattaaggttctcttgtagcaatccaactatttacttgatatgaagaatggttaggactgagaggatatatatagt |
25718089 |
T |
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| Q |
316 |
gtgagaatgagcaaaggaaataatcattattactgttatcattattataataaactattaaatcataagccaaattgtaattgttgtgcttaatcaataa |
415 |
Q |
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| T |
25718088 |
gtgagaatgagcaaaggaaatagtcattattactgttatcattattataataaagtattaaatcataagccaaattgtaattgttgtgcttaatcaataa |
25717989 |
T |
|
| Q |
416 |
ccaagtagtccaaaaagtcaaaacagaaggaaattagacttttgttaatcacacctaacaattccactgacactttgtcttggattctcattccaaattt |
515 |
Q |
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| T |
25717988 |
ccaagtagtccaaaaagtcaaaacagaaggaaattagacttttgttaatcacacctaacaattccactgacactttatcttggattctcattccaaattt |
25717889 |
T |
|
| Q |
516 |
ggaggttaatttaatcagtagaaatacttgaa-gata-ttgatt-aacttagttaacatcaactttcttgatattttacatacagaataagtaattccaa |
612 |
Q |
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|||||||||||||||||||||||| ||||||| |||| |||||| |||||||||| || ||||||||||||||| ||||| |||||||||||||||||| |
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| T |
25717888 |
ggaggttaatttaatcagtagaaaaacttgaaggatatttgattaaacttagttaccactaactttcttgatattgtacatgcagaataagtaattccaa |
25717789 |
T |
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| Q |
613 |
agatacacaaacattaagattgcattttaaggacattgata |
653 |
Q |
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| T |
25717788 |
agatacacaaacattaacattgcattttaaggacattgata |
25717748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 651 - 758
Target Start/End: Complemental strand, 25717712 - 25717605
Alignment:
| Q |
651 |
ataccaatctaacagttttaacaatttaactgtttcaacaattgaaacaccagtacatcaatgaaaaacaggtctaatgtaagtgtcacatctgtttatg |
750 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25717712 |
ataccaatctaacagttttaccaatttaactgtttcgacaattgaaacaccagtacatcaatgaaaaacaggtctaatgtaagtgtcacatctgtttatg |
25717613 |
T |
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| Q |
751 |
ttgttttt |
758 |
Q |
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|||||||| |
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| T |
25717612 |
ttgttttt |
25717605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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