View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_high_3 (Length: 559)
Name: NF4404_high_3
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Original strand, 11641170 - 11641713
Alignment:
| Q |
1 |
ttgatgatgtgtagcatgtgaatgtatgggtggctgtaaagcttgctgtgcctaataatgaccgtggaagtagagtgatgcttacgacgcgcaagaaaga |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11641170 |
ttgatgatgtgtggcatgtgaatgtatgggatgctgtaaagcttgctttgcctaataatgaccgtggaagtagagtgatgcttacgacgcgcaagaaaga |
11641269 |
T |
|
| Q |
101 |
tatagctttgtattcttgtgctgaattaggtaaggattttcaccttgaattcttacctgagcaagaagcttggtctcttttttgtaggaagacatttcaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11641270 |
tatagctttgtattcttgtgctgaattaggtaaggattttcaccttgaattcttacctgagcaagaagcttggtctcttttttgtaggaagacatttcaa |
11641369 |
T |
|
| Q |
201 |
ggtaataataactcatgtcctcctcatcttgaagaagtttgtaggaatattttgaaattgtgtggagggttaccattagcaattgtggcaatcagtggtg |
300 |
Q |
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| T |
11641370 |
ggtaataataactcatgtcctcctcatcttgaagaagtttgtaggaatatcttgaaattgtgtggagggttaccattagcaattgtggcaatcagtggtg |
11641469 |
T |
|
| Q |
301 |
ctttggctacaaaaggaagatcaaacatagaagagtggcagatagtttgcagaagttttggttctgagattgaaggcaatgacaaattggaagatatgaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11641470 |
ctttggctacaaaaggaagatcaaacatagaagagtggcagatagtttgcagaagttttggttctgagattgaaggcaatgacaaattggaagatatgaa |
11641569 |
T |
|
| Q |
401 |
gaaagtactttccttaagtttcaatgaattgccttaccatcttaaatcatgcttgttgtatttaagcatctttccagaatttcacgctatcgagcatatg |
500 |
Q |
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| T |
11641570 |
gaaagtactttccttaagtttcaatgaattgccttaccatcttaaatcatgcttgttgtatttaagcgtctttccagaatttcacgctatcgagcatatg |
11641669 |
T |
|
| Q |
501 |
agattgattcgattgtggatagctgaaggatttgtaaatggtga |
544 |
Q |
| |
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| T |
11641670 |
agattgattcgattgtgggtagctgaaggatttgtaaatggtga |
11641713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 49 - 544
Target Start/End: Original strand, 11622727 - 11623207
Alignment:
| Q |
49 |
tgcctaataatgaccgtggaagtagagtgatgcttacgacgcgcaagaaagatatagctttgtattcttgtgctgaattaggtaaggattttcaccttga |
148 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
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| T |
11622727 |
tgcctaataacaaccgtggaagtagagtgatgcttaccacacgcaagaaagatatag-------ttc--gtgctgaattaggtaaggactttcaccttgc |
11622817 |
T |
|
| Q |
149 |
attcttacctgagcaagaagcttggtctcttttttgtaggaagacatttcaaggtaataataactcatgtcctcctcatcttgaagaagtttgtaggaat |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
11622818 |
attcttacctgagcaagaagcttggtctcttttttgtaggaagacatttcaaggtaat------tcatgtcctcctcatcttgaagaagtttgtaggaat |
11622911 |
T |
|
| Q |
249 |
attttgaaattgtgtggagggttaccattagcaattgtggcaatcagtggtgctttggctacaaaaggaagatcaaacatagaagagtggcagatagttt |
348 |
Q |
| |
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|| |||||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
11622912 |
atcttgaaattgtgtggagggttgccactagcaattgtagcaataagtggtgctttggctacaagaggaagaacaaacatagaagagtggcagatagttt |
11623011 |
T |
|
| Q |
349 |
gcagaagttttggttctgagattgaaggcaatgacaaattggaagatatgaagaaagtactttccttaagtttcaatgaattgccttaccatcttaaatc |
448 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11623012 |
gcagaagttttggttctgaaattgaaggcaatgacaaactcgaagatatgaaaaaagtactttccttaagtttcaatgaattgccttaccatcttaaatc |
11623111 |
T |
|
| Q |
449 |
atgcttgttgtatttaagcatctttccagaatttcacgctatcgagcatatgagattgattcgattgtggatagctgaaggatttgtaaatggtga |
544 |
Q |
| |
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||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
11623112 |
atgtttgttgtatttaagcatctttccggagtttcacgctatcgagcatatgagattgattcgattgttgatagctgaaggatttgtaaatagtga |
11623207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Complemental strand, 11604779 - 11604242
Alignment:
| Q |
1 |
ttgatgatgtgtagcatgtgaatgtatggg-tggctgtaaagcttgctgtgcctaataatgaccgtggaagtagagtgatgcttacgacgcgcaagaaag |
99 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||| | || | |||| | |||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
11604779 |
ttgatgatgtgtggcatgtgaaagtatgggatggcc-tcaatcatgcttttcctaataacaaccgtggaagtagagtgatgcttacgacgcgcaagagag |
11604681 |
T |
|
| Q |
100 |
atatagctttgtattcttgtgctgaattaggtaaggattttcaccttgaattcttacctgagcaagaagcttggtctcttttttgtaggaagacatttca |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
11604680 |
atatagctttgtattcttgtgctggattgggtaaggattttcatcttgaattcttacctgagaaagaagcttggtctcttttttgtaggaagacatttca |
11604581 |
T |
|
| Q |
200 |
aggtaataataactcatgtcctcctcatcttgaagaagtttgtaggaatattttgaaattgtgtggagggttaccattagcaattgtggcaatcagtggt |
299 |
Q |
| |
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|| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
11604580 |
agataat------tcatgtcctcctcatcttgaagaagtttgtaggaatatcttgaaattgtgtggagggttgccactagcaattgtggcaatcagtggt |
11604487 |
T |
|
| Q |
300 |
gctttggctacaaaaggaagatcaaacatagaagagtggcagatagtttgcagaagttttggttctgagattgaaggcaatgacaaattggaagatatga |
399 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11604486 |
gctttggcgacaaaagaaagatcaaacatagaagaatggcagatagtttgcagaagttttggttctgagattgaaggcaatgacaaattggaagatatga |
11604387 |
T |
|
| Q |
400 |
agaaagtactttccttaagtttcaatgaattgccttaccatcttaaatcatgcttgttgtatttaagcatctttccagaatttcacgctatcgagcatat |
499 |
Q |
| |
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| |||||| |||| |||||||| ||||| || |||| ||||||||||||| ||| ||||||||| ||||||||| |||||||||||||| ||| | |
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|
| T |
11604386 |
ataaagtaatttcattaagtttaaatgagttaccttcttatcttaaatcatgtttgatgtatttaaccatctttccggaatttcacgctatggagacttg |
11604287 |
T |
|
| Q |
500 |
gagattgattcgattgtggatagctgaaggatttgtaaatggtga |
544 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
11604286 |
gagattgattcggttgtggatagctgaagggtttgtaaatggtga |
11604242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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