View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_high_5 (Length: 503)
Name: NF4404_high_5
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 134 - 452
Target Start/End: Original strand, 38448758 - 38449079
Alignment:
| Q |
134 |
ttggaactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtacattccaaagtcatttcgaagcttctgat |
233 |
Q |
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| T |
38448758 |
ttggaactcattattattgattcctaatcatcctttatttccatgtcatcaaaatggtttctattagcgtaaattccaaagtcatttccaagcttctgat |
38448857 |
T |
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| Q |
234 |
ttaagaatgttactat---tggagaaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagt |
330 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38448858 |
ttaagaatgttactatatttggagaaattgttacgttcagcatatgtttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagt |
38448957 |
T |
|
| Q |
331 |
atctgctactaaaaggttgaacttgataggacctttggtgcagcattgttgcaatatcaagttgctcctattgctgaagttatattagaaaaattgatga |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38448958 |
atctgctactaaaaggttgaacttgataggacctttggtgcagcattgttgcaatatcaagttgctcctattgctgaagttatattagaaaaatggatga |
38449057 |
T |
|
| Q |
431 |
atcgagatgttgaggaagcatg |
452 |
Q |
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| T |
38449058 |
atcgagatgttgaggaagcatg |
38449079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 38448574 - 38448673
Alignment:
| Q |
20 |
atgtcagtattctttttccttcaccttattgcttattaaatgtgaattattatgctttatggtcatactattgtggctgctgagaaggaaaaatcatggc |
119 |
Q |
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| T |
38448574 |
atgtcagtattctttttccttcaccttattgcttattaaatgtgaattattatgctttatggtcatactattgtggctgctgagaaggaaaaatcatggc |
38448673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 329 - 452
Target Start/End: Original strand, 38440567 - 38440691
Alignment:
| Q |
329 |
gtatctgctactaaaaggttgaacttgataggacct-ttggtgcagcattgttgcaatatcaagttgctcctattgctgaagttatattagaaaaattga |
427 |
Q |
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||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
38440567 |
gtatctgctgctacaaggttgaacttgataggaccccttggtgcagcattgttgcaacatcaagttgctcctattgctgaagttatattagaaaaatgga |
38440666 |
T |
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| Q |
428 |
tgaatcgagatgttgaggaagcatg |
452 |
Q |
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| T |
38440667 |
tgaatcgtgatgttgaggaagcatg |
38440691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 38440418 - 38440467
Alignment:
| Q |
285 |
cttctctcaaaacaatgagagattcttctctgaagttagggacagtatct |
334 |
Q |
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| T |
38440418 |
cttctctcaaaacaatgagagattcttctatgaagttagggactgtatct |
38440467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 495
Target Start/End: Original strand, 38449112 - 38449148
Alignment:
| Q |
459 |
ttgccatggttacttgttttcaagactgttttcatct |
495 |
Q |
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| T |
38449112 |
ttgccatggttacttgttttcaagactgttttcatct |
38449148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 495
Target Start/End: Original strand, 38440729 - 38440761
Alignment:
| Q |
463 |
catggttacttgttttcaagactgttttcatct |
495 |
Q |
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| T |
38440729 |
catggttacttgttttcaagattgttttcatct |
38440761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 38448087 - 38448130
Alignment:
| Q |
203 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
246 |
Q |
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| T |
38448087 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38448130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 38550182 - 38550139
Alignment:
| Q |
203 |
tacattccaaagtcatttcgaagcttctgatttaagaatgttac |
246 |
Q |
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||||||| ||||||||||| ||||||||| |||||||||||||| |
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| T |
38550182 |
tacattctaaagtcatttcaaagcttctgttttaagaatgttac |
38550139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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