View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_high_6 (Length: 397)
Name: NF4404_high_6
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 192 - 378
Target Start/End: Original strand, 4019770 - 4019954
Alignment:
| Q |
192 |
gggtgatacaaatatgcatcagctaaatgtttcctaattctattgcaaaatccttcaactactaccaaagttttggaacaaagagagtgacaaaaactgc |
291 |
Q |
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| T |
4019770 |
gggtgatacaaatatgcatcagctaaatgtttcctaattctattgcaaaatccttcaactactaccaaagttttggaaca--gagagtgacaaaaactgc |
4019867 |
T |
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| Q |
292 |
aattatattttaaaacgacaaataattcgagacaaacaaatataagactcgacaaacataacataatataagacagaggaagtatac |
378 |
Q |
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| T |
4019868 |
aattatattttaaaacgacaaataattcgagacaaacaaatataagaatcgacaaacataacataatatgagacagagaaagtatac |
4019954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 4019588 - 4019722
Alignment:
| Q |
10 |
gcagagactaatagtttgaagtaattgagatttatttaaggtatcgacttcttccaacatatatcttttattctacttcaccatgtcgctccattcaata |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4019588 |
gcagagactaatagtttgaagtaattgagatttatttaaggtatagacttcttccaacatatattttttattctacttcaccatgtcgctccattcaata |
4019687 |
T |
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| Q |
110 |
tctttgaacaatttagcattttatattattttcgt |
144 |
Q |
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| T |
4019688 |
tctttgaacaatttagcattttatattattttcgt |
4019722 |
T |
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