View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_high_9 (Length: 340)
Name: NF4404_high_9
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 2377857 - 2377553
Alignment:
| Q |
19 |
tacataataacttgctaactactttctaatattttaatgtttcaaccgattctttgccaactatattgttttgcttttcagaggcatcatagccaatatt |
118 |
Q |
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| T |
2377857 |
tacataataacatgctaactactttctaatattttaatgtttcaaccgattctttgccaactatattgttttgcttttcagaggcatcatagccaatatt |
2377758 |
T |
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| Q |
119 |
atttcattcctaacnnnnnnnnnatcattccctttacaacccaaccacttttttgccgtgaacaacttacttttgttcaataataaaaagttacatggat |
218 |
Q |
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| T |
2377757 |
atttcattcctaactttttttt-atcattccctttacaacccaaccacttttttgccgtgaccaacttatttttgttcaataataaaaagttacatggat |
2377659 |
T |
|
| Q |
219 |
tgatatataagattatttgaatgtttctttcactcattgtccttcataatcatcataatttgtaagtttttctacgaaaagtcatgttgattacaaagca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2377658 |
tgatatataagattatttgaatgtttctttcactcattgtccttcataatcatcataatttgtaagtttttctacgaaaagtcatgttgattacaaagca |
2377559 |
T |
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| Q |
319 |
tctatg |
324 |
Q |
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|||||| |
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| T |
2377558 |
tctatg |
2377553 |
T |
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