View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_low_19 (Length: 238)
Name: NF4404_low_19
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_low_19 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 50880452 - 50880673
Alignment:
| Q |
18 |
gacttcaattaaaattgacagatct-caatctctaatactccctcaaaggtccttccttttcaggttgtttatttcagatcttgagataagaaagcacga |
116 |
Q |
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| T |
50880452 |
gacttcaattaaaattgacagatctgcaatctctaatactccctcaaaggtccttccttttcaggttgtttatttcagatcttgagataagaaagcacga |
50880551 |
T |
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| Q |
117 |
gaaggaatagaatgatattctgctttaacatgttggctcaacccaacttcgataagttttaatactgtcatcaaaactgagtccaatggtgagtaaggga |
216 |
Q |
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| T |
50880552 |
gaaggaatagaatgatattctgctttaacatgttggctcaacccaacttcgataagttttaatactgtcatcaaaactgagtccaatggtgagtaaggga |
50880651 |
T |
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| Q |
217 |
gttcaaccatgaatgaaaacat |
238 |
Q |
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| T |
50880652 |
gttcaaccatgaatgaaaacat |
50880673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 11347839 - 11347622
Alignment:
| Q |
23 |
caattaaaattgacagat-ctcaatctctaatactccctcaaaggtccttccttttcaggttgtttatttcagatcttgagataagaaagcacgagaagg |
121 |
Q |
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| T |
11347839 |
caattaaaattgacaaattcgcaatctctgctactccctcaaaggttcttcctttttgggttgtttatttcagatcttgagatgagaaagcacgagaagg |
11347740 |
T |
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| Q |
122 |
aatagaatgatatt--ctgctttaacatgttggctcaacccaacttcgataagttttaatactgtcatcaaaactgagtccaatggtgagtaagggagtt |
219 |
Q |
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| T |
11347739 |
aatataatgatattttctgctttaacaggttggctcaatccagcttcgataagttttaacactgtcatcaaaactgagtccaatggcgagtaagggagtt |
11347640 |
T |
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| Q |
220 |
caaccatgaatgaaaaca |
237 |
Q |
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| T |
11347639 |
caaccatgaatgaaaaca |
11347622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 12631120 - 12631257
Alignment:
| Q |
25 |
attaaaattgacagatct-caatctctaatactccctcaaaggtccttccttttcaggttgtttatttcagatcttgagataagaaagcacgagaaggaa |
123 |
Q |
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||||||||||||| |||| ||||||||| ||||||||||||||| ||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
12631120 |
attaaaattgacatatctgcaatctctactactccctcaaaggttcttacttttcgggttgtttatttcagatattgagatgggaaagcacgagaaggaa |
12631219 |
T |
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| Q |
124 |
tagaatgatattctgctttaacatgttggctcaaccca |
161 |
Q |
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| T |
12631220 |
tataatgatattctgctttaacatattggctaaaccca |
12631257 |
T |
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