View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_low_20 (Length: 237)
Name: NF4404_low_20
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 41082730 - 41082513
Alignment:
| Q |
3 |
atatggactgtatgtataaatagagtcttttgtattcataactaatcagttgattaagttatcaataaatgaagtttcagtaaaatagaaacatagcaaa |
102 |
Q |
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| T |
41082730 |
atatggactgtatgtataaatagagtcttttgtattcataactaatcagttgattaagttatcaataaatgaagtttcagtaaaatagaaacatagcaaa |
41082631 |
T |
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| Q |
103 |
cttagatttatgagataactaactgctttaagaaacagcacatagtcttaattataacatggtttcttaagatattgaatttgttacctaaccaaatttt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082630 |
cttagatttatgagataactaactgctttaagaaacagcacatagtcttaattataacatggtttcttaagatattgaatttgttacctaaccaaatttt |
41082531 |
T |
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| Q |
203 |
aatatttctaagtacata |
220 |
Q |
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|||||||||||||||||| |
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| T |
41082530 |
aatatttctaagtacata |
41082513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37067978 - 37067907
Alignment:
| Q |
1 |
tcatatggactgtatgtataaatagagtcttttgtattcataactaatcagttgattaagttatcaataaatga |
74 |
Q |
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| T |
37067978 |
tcatatggactc-atgtgtaaatagagtcctt-gtattcataattaatcaattgatcaagttatcaataaatga |
37067907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 37060499 - 37060431
Alignment:
| Q |
4 |
tatggact-gtatgtataaatagagtcttttgtattcataactaatcagttgattaagttatcaataaatga |
74 |
Q |
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| T |
37060499 |
tatggactagtatgtataaatagagtct---gtattcattattaatcaattggtcaagttatcaataaatga |
37060431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45369957 - 45369916
Alignment:
| Q |
1 |
tcatatggactg-tatgtataaatagagtcttttgtattcat |
41 |
Q |
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| T |
45369957 |
tcatatggactcatatgtataaatagagtcttttgtattcat |
45369916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 47823251 - 47823180
Alignment:
| Q |
1 |
tcatatggactgtatgtataaatagagtcttttgtattcataactaatcagttgattaagttatcaataaatg |
73 |
Q |
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||||||||||| |||||||| | ||||||||||||||||| | | |||| ||||| ||||||||| |||||| |
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| T |
47823251 |
tcatatggactc-atgtataagtcgagtcttttgtattcattattcatcaattgatcaagttatcactaaatg |
47823180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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