View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4404_low_4 (Length: 554)

Name: NF4404_low_4
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4404_low_4
NF4404_low_4
[»] chr3 (3 HSPs)
chr3 (1-274)||(8525319-8525581)
chr3 (344-552)||(8525038-8525249)
chr3 (483-532)||(14554452-14554501)
[»] chr5 (12 HSPs)
chr5 (431-554)||(42125581-42125704)
chr5 (440-543)||(42130817-42130920)
chr5 (438-554)||(34230708-34230824)
chr5 (438-554)||(34238763-34238879)
chr5 (440-554)||(41711694-41711808)
chr5 (439-554)||(41569923-41570038)
chr5 (344-394)||(42130948-42130998)
chr5 (440-536)||(42118998-42119097)
chr5 (340-394)||(34230628-34230682)
chr5 (340-394)||(34238683-34238737)
chr5 (340-378)||(42125742-42125780)
chr5 (345-394)||(42119134-42119183)
[»] chr4 (1 HSPs)
chr4 (442-552)||(11120357-11120467)
[»] chr6 (2 HSPs)
chr6 (351-554)||(25520847-25521044)
chr6 (147-253)||(25520646-25520752)
[»] chr2 (2 HSPs)
chr2 (440-521)||(12250435-12250516)
chr2 (25-76)||(12251659-12251710)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 8525581 - 8525319
Alignment:
Q  1 atgactctacacatatatttcaattgtggatcgacattctccagccatagattccaatagaaatattaacaattatttatgttgtgatgtgttggtccac 100  Q
    ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8525581 atgactctaca-atatatttcaattgtgcatcgacattctcgagccatagattccaatagaaatattaacaattatttatgttgcgatgtgttggtccac 8525483  T
Q  101 caag-aaaaacaatcactaaatattgtttttgacaatattgtatttccaatttggatataaatatagacgttgtgttccttaaaatatcatccacactta 199  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8525482 caaggaaaaacaatcactaaatattgtttttgaaaatattgtattttcaatttggatataaatatagacgttgtgttccttaaaatatcatccacactta 8525383  T
Q  200 gttttcaattgatcttcattcacataaaccatttggtaacactttccacaaaatcatttattcataatggtgtgg 274  Q
    |||           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8525382 gtt-----------ttcattcacataaaccatttggtaacactttccacaaaatcatatattcataatggtgtgg 8525319  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 344 - 552
Target Start/End: Complemental strand, 8525249 - 8525038
Alignment:
Q  344 catcattatgagagctctgctttgcttcatttcaagtcatccttcattataaattctgaatatgctcatt---atggttgtgatgaattttctcttttga 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||| |||   ||  ||||||||||| |  ||||||||    
T  8525249 catcattatgagagctctgctttgcttcatttcaagtcatccttcactataaattctgaacctgcttattcttatttttgtgatgaatctcgtcttttga 8525150  T
Q  441 aaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtga 540  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||  || ||||||||||||||    
T  8525149 aaacagcaacatggaaaaatgagattgattgctgctcatgggatggtgtcacgtgtgacaccatcagtggtcacgtgattggcctcaaccttggctgtga 8525050  T
Q  541 aggtcttcaagg 552  Q
    ||||||||||||    
T  8525049 aggtcttcaagg 8525038  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 14554501 - 14554452
Alignment:
Q  483 atggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaacctt 532  Q
    ||||||||||||| ||||||||  | |||||||||||||||||| |||||    
T  14554501 atggtgtcacgtgcgacaccatatcaggtcacgtgattgaactagacctt 14554452  T

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Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 431 - 554
Target Start/End: Complemental strand, 42125704 - 42125581
Alignment:
Q  431 tctcttttgaaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaacc 530  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||  || || |    
T  42125704 tctcttctgaaaacagcaacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgtgataccatcactcgtcacgtgattggcctcaatc 42125605  T
Q  531 ttggctgtgaaggtcttcaaggta 554  Q
    ||||||||||||| ||||||||||    
T  42125604 ttggctgtgaaggccttcaaggta 42125581  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 440 - 543
Target Start/End: Complemental strand, 42130920 - 42130817
Alignment:
Q  440 aaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtg 539  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||  || |||||||||||||||| || |||||||||||||    
T  42130920 aaaacagcaacatggaaaaatgggactgattgctgctcatggaatggcgtcacgtgtgacacagtctctggtcacgtgattgacctcaaccttggctgtg 42130821  T
Q  540 aagg 543  Q
    ||||    
T  42130820 aagg 42130817  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 438 - 554
Target Start/End: Original strand, 34230708 - 34230824
Alignment:
Q  438 tgaaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctg 537  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |  |||||||||| ||||  || |||||||||||    
T  34230708 tgaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggctg 34230807  T
Q  538 tgaaggtcttcaaggta 554  Q
    ||||||  |||||||||    
T  34230808 tgaaggctttcaaggta 34230824  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 438 - 554
Target Start/End: Original strand, 34238763 - 34238879
Alignment:
Q  438 tgaaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctg 537  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |  |||||||||| ||||  || |||||||| ||    
T  34238763 tgaaaacagcaacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggccttaaccttggttg 34238862  T
Q  538 tgaaggtcttcaaggta 554  Q
    ||||||  |||||||||    
T  34238863 tgaaggctttcaaggta 34238879  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 440 - 554
Target Start/End: Original strand, 41711694 - 41711808
Alignment:
Q  440 aaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtg 539  Q
    |||||| ||||||||||||||||||||||||| |||||||||   |||||||| ||||||||| ||  ||||| |||| |||  || |||||||||||||    
T  41711694 aaaacaacaacatggaaaaatgagactgattgttgctcatggcccggtgtcacatgtgacaccgtctatggtcgcgtggttggcctcaaccttggctgtg 41711793  T
Q  540 aaggtcttcaaggta 554  Q
    | || ||||||||||    
T  41711794 atggccttcaaggta 41711808  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 554
Target Start/End: Original strand, 41569923 - 41570038
Alignment:
Q  439 gaaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgt 538  Q
    ||||||| |||||||||||| ||||||  |||| || |||||| ||||||||||||| ||| |  || |||||| ||||||||  ||  |||||||||||    
T  41569923 gaaaacatcaacatggaaaattgagacaaattgttgttcatggcatggtgtcacgtgcgacgctgtctctggtcgcgtgattggtctcgaccttggctgt 41570022  T
Q  539 gaaggtcttcaaggta 554  Q
    ||| | ||||||||||    
T  41570023 gaatgccttcaaggta 41570038  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 344 - 394
Target Start/End: Complemental strand, 42130998 - 42130948
Alignment:
Q  344 catcattatgagagctctgctttgcttcatttcaagtcatccttcattata 394  Q
    |||||| |||| ||||||||||||||||| |||||||||||||||||||||    
T  42130998 catcataatgacagctctgctttgcttcagttcaagtcatccttcattata 42130948  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 440 - 536
Target Start/End: Complemental strand, 42119097 - 42118998
Alignment:
Q  440 aaaacagcaacatggaaaaatgagactgattgctgc---tcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggct 536  Q
    ||||| |||||||||||||||| |||||||||||||   |||||| |||||||| |||||| ||   || |||||||||||||||  || ||||||||||    
T  42119097 aaaactgcaacatggaaaaatgggactgattgctgctcatcatggcatggtgtcgcgtgtgtcagagtctctggtcacgtgattggtctcaaccttggct 42118998  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 34230628 - 34230682
Alignment:
Q  340 atgtcatcattatgagagctctgctttgcttcatttcaagtcatccttcattata 394  Q
    |||||||||| ||||||||| |||||||||||| |||||||| ||||||| ||||    
T  34230628 atgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactata 34230682  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 34238683 - 34238737
Alignment:
Q  340 atgtcatcattatgagagctctgctttgcttcatttcaagtcatccttcattata 394  Q
    |||||||||| ||||||||| |||||||||||| |||||||| ||||||| ||||    
T  34238683 atgtcatcatgatgagagctttgctttgcttcagttcaagtcctccttcactata 34238737  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 42125780 - 42125742
Alignment:
Q  340 atgtcatcattatgagagctctgctttgcttcatttcaa 378  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  42125780 atgtcatcatgatgagagctctgctttgcttcagttcaa 42125742  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 42119183 - 42119134
Alignment:
Q  345 atcattatgagagctctgctttgcttcatttcaagtcatccttcattata 394  Q
    ||||| |||||||||||||| ||||||| |||||||| ||||||| ||||    
T  42119183 atcatgatgagagctctgctctgcttcagttcaagtcctccttcactata 42119134  T

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Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 442 - 552
Target Start/End: Complemental strand, 11120467 - 11120357
Alignment:
Q  442 aacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaa 541  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||  || || ||||||||||||    
T  11120467 aacaacaacatggaaaaatgggactgattgctgctcatggaatggtgtcacgtgcgacaccatctctggtcgcgtgattggcctcaatcttggctgtgaa 11120368  T
Q  542 ggtcttcaagg 552  Q
    |||||||||||    
T  11120367 ggtcttcaagg 11120357  T

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Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 351 - 554
Target Start/End: Original strand, 25520847 - 25521044
Alignment:
Q  351 atgagagctctgctttgcttcatttcaagtcatccttcattataaattctgaatatgctcattatggttgtgatgaattttctcttttgaaaacagcaac 450  Q
    |||||||||||||| ||||||| || || || ||||||| |||||||||||||| | ||   |||  |||||||||||   ||||| |||||||||||||    
T  25520847 atgagagctctgctctgcttcagtttaaatcctccttcactataaattctgaatcttct---tatccttgtgatgaat---ctcttctgaaaacagcaac 25520940  T
Q  451 atggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattgaactaaaccttggctgtgaaggtcttcaa 550  Q
    ||||||| ||| ||||||||||||||||||| |||||||||| || |||||||    ||||| ||||||||  || ||||||||||||||||| || |||    
T  25520941 atggaaatatgggactgattgctgctcatggcatggtgtcacatgcgacaccacttttggtcgcgtgattggcctcaaccttggctgtgaaggcctccaa 25521040  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 25520646 - 25520752
Alignment:
Q  147 caatttggatataaatatagacgttgtgttccttaaaatatcatccacacttagttttcaattgatcttcattcacataaaccatttggtaacactttcc 246  Q
    |||||||| |||||||||  ||||||||| ||||   || ||||||||||||| ||||| |||| | |||||||||||||||||||| ||||||||||||    
T  25520646 caatttggctataaatatttacgttgtgtcccttggcatttcatccacacttacttttctattgtttttcattcacataaaccatttagtaacactttcc 25520745  T
Q  247 acaaaat 253  Q
    | |||||    
T  25520746 aaaaaat 25520752  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 440 - 521
Target Start/End: Complemental strand, 12250516 - 12250435
Alignment:
Q  440 aaaacagcaacatggaaaaatgagactgattgctgctcatggaatggtgtcacgtgtgacaccatcactggtcacgtgattg 521  Q
    ||||||||||||||| |||||| ||||||||||||||||||| |||||||||| |||||||| |||  |||||| |||||||    
T  12250516 aaaacagcaacatggcaaaatgggactgattgctgctcatggcatggtgtcacatgtgacacaatctatggtcatgtgattg 12250435  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 12251710 - 12251659
Alignment:
Q  25 tgtggatcgacattctccagccatagattccaatagaaatattaacaattat 76  Q
    ||||||| ||||||||||| |||||||||| |||||||||| ||||||||||    
T  12251710 tgtggatagacattctccatccatagattcaaatagaaatagtaacaattat 12251659  T

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