View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_low_6 (Length: 423)
Name: NF4404_low_6
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 11641168 - 11640764
Alignment:
| Q |
1 |
cacaattaggtacctgcttctctgaagcaaatccttaatcaactctttcagcttgtcacttttcatcctttcaactgcttctggaactggttttccgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11641168 |
cacaattaggtacctgcttctctgaagcaaatccttaatcaactctttcagcttgtcacttttcatcctttcaactgcttctggaactggttttccgatg |
11641069 |
T |
|
| Q |
101 |
agaatatgaatctgttcaacaaggtctttaagcaactcttccattttgaaagattgagagagattaacccaagcatgaatcctaaaacgcttcttgactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11641068 |
agaatatgaatctgttcaacaaggtctttaagcaactcttccattttgaaagattgagagagattaacccaagcatgaatcctaaaacgcttcttgactt |
11640969 |
T |
|
| Q |
201 |
ttggatcatcatagacttgttttgctattgttgtcttccctaaacctcccataccataaatggaaatcactgccctatttgattcatctttgaaaagcaa |
300 |
Q |
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| T |
11640968 |
ttggatcatcatagacttgttttgctattgttgtcttccctaaacctcccataccataaatggaaatcacagccctatttgattcatctttgaaaagcaa |
11640869 |
T |
|
| Q |
301 |
atcacagagctgcttctttggttgttcaattccaactaaatcagcttcctccagcaaaagggcatcacctgttggaatatttatttaaaattataatagc |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11640868 |
atcacagagctgcttctttggatgttcaattccaactaaatcagcttcctccagcaaaagggcatcacctgttggaatatttatttaaaattataatagc |
11640769 |
T |
|
| Q |
401 |
tattt |
405 |
Q |
| |
|
||||| |
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| T |
11640768 |
tattt |
11640764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 2 - 405
Target Start/End: Complemental strand, 11622676 - 11622273
Alignment:
| Q |
2 |
acaattaggtacctgcttctctgaagcaaatccttaatcaactctttcagcttgtcacttttcatcctttcaactgcttctggaactggttttccgatga |
101 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||| |||||||||||||| | |||| | |||||| || ||| || | ||||| | |||||||| | | |
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| T |
11622676 |
acaattagatacctgcttctctgaagcaaattctttatcaactctttcagatcgtcattattcatcgttccaattgatcctggagcaggttttccaaaaa |
11622577 |
T |
|
| Q |
102 |
gaatatgaatctgttcaacaaggtctttaagcaactcttccattttgaaagattgagagagattaacccaagcatgaatcctaaaacgcttcttgacttt |
201 |
Q |
| |
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| |||| | | || ||||||||||| || | |||||||||||||| |||||| |||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
11622576 |
cattatggagtttttgtacaaggtctttcagtatctcttccattttgatagattgggagagattaacccaagcatgaatcctgaaacgtttcttgacttt |
11622477 |
T |
|
| Q |
202 |
tggatcatcatagacttgttttgctattgttgtcttccctaaacctcccataccataaatggaaatcactgccctatttgattcatctttgaaaagcaaa |
301 |
Q |
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|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| || ||||||||| | || |||||||||||||||||||||||| |
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| T |
11622476 |
tggatcatcataaacttgttttgccaatgttgtcttccctaaacctcccataccatagatcgaaatcacttctctctttgattcatctttgaaaagcaaa |
11622377 |
T |
|
| Q |
302 |
tcacagagctgcttctttggttgttcaattccaactaaatcagcttcctccagcaaaagggcatcacctgttggaatatttatttaaaattataatagct |
401 |
Q |
| |
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||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||| ||||| |
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| T |
11622376 |
tcagtcagctgcttctttggttgatcaattccaactaaatcagcttcctctagcaaaagggcatcacctgttggagtatatatttaaaaatatattagct |
11622277 |
T |
|
| Q |
402 |
attt |
405 |
Q |
| |
|
|||| |
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|
| T |
11622276 |
attt |
11622273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 119 - 382
Target Start/End: Original strand, 11604902 - 11605165
Alignment:
| Q |
119 |
acaaggtctttaagcaactcttccattttgaaagattgagagagattaacccaagcatgaatcctaaaacgcttcttgacttttggatcatcatagactt |
218 |
Q |
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||||||||||| || | |||||||||||||| |||||| |||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| |
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| T |
11604902 |
acaaggtctttcagtatctcttccattttgatagattgggagagattaacccaagcatgaatcctgaaatgtttcttgacttttggatcatcatagactt |
11605001 |
T |
|
| Q |
219 |
gttttgctattgttgtcttccctaaacctcccataccataaatggaaatcactgccctatttgattcatctttgaaaagcaaatcacagagctgcttctt |
318 |
Q |
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||||||| | |||||||||||||||||||||||||||||| || ||||||||| | || |||| |||||| ||||||||||||||||| ||||||||||| |
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| T |
11605002 |
gttttgccaatgttgtcttccctaaacctcccataccatagattgaaatcacttctctctttggttcatcattgaaaagcaaatcacacagctgcttctt |
11605101 |
T |
|
| Q |
319 |
tggttgttcaattccaactaaatcagcttcctccagcaaaagggcatcacctgttggaatattt |
382 |
Q |
| |
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|||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
11605102 |
tggttgatcaattccaactaaatcagcttcatctagcaaaagggcatcacctgttggaatattt |
11605165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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