View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_low_8 (Length: 370)
Name: NF4404_low_8
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 41083025 - 41083366
Alignment:
| Q |
15 |
ttttgtgcagaaactaaaaaacgtatgaaactagaaagattgaaaactactcgatgtatgttaagagtctcatactgaaagtgatatggtctgaacaaat |
114 |
Q |
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| T |
41083025 |
ttttgtgcacaaactaaaaagcgaatgaaactagaaagattgaaaactactctacgtatgttaagagtctcacactgatagtgatatggtctgaacaaat |
41083124 |
T |
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| Q |
115 |
gttaataggttgggtagtcttcatcttacaagctggtgttgtaaggttgtgttaaactcaatcacaaattcaaacatgttattagagtctatccaaaatt |
214 |
Q |
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| T |
41083125 |
gtttataggttgggtagtctttatcttacaagctggtgttg--------tgttaaactcaatcacaaattcaaacatgttattagagcctatccaaaatt |
41083216 |
T |
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| Q |
215 |
tgtttgaccatcggctactagctttccactatcggaccactcgagtcatgttttagatgttcagtcttagatgtgagaggtaagagtcttacgctgaaaa |
314 |
Q |
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| T |
41083217 |
tgtttgaccatcggctactagctttccactatcggaccactcaagtcacgttttagatgttcagtcttagatgtgagaggtaagagtcttacgctgaaaa |
41083316 |
T |
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| Q |
315 |
atgatatagcctgaacaaatgcttacaagtgaccgtagacttcatctcac |
364 |
Q |
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| T |
41083317 |
atgatatagcctgaacaaatgcttacaagtgaccgtagtcttcatctcac |
41083366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 45089622 - 45089521
Alignment:
| Q |
153 |
ttgtaaggttgtgttaaactcaatcacaaattcaaacatgttattagagtctatccaaaatttgtttgaccatcggctactagctttccactatcggacc |
252 |
Q |
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| T |
45089622 |
ttgtaagattgtgtaaaacttactcacaaattctaaggtgttattagagtctgtcaaaaatttgtttgaccaccggctatcagcttttccctatcggacc |
45089523 |
T |
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| Q |
253 |
ac |
254 |
Q |
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| T |
45089522 |
ac |
45089521 |
T |
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