View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4404_low_9 (Length: 344)
Name: NF4404_low_9
Description: NF4404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4404_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 128 - 329
Target Start/End: Complemental strand, 34265987 - 34265785
Alignment:
| Q |
128 |
atatcattaattattactaagcaatgatgtatttttcgatcaatatgcttcccttttattaaaaaatatgaaaatataacatatagtaaatgatacaaca |
227 |
Q |
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| T |
34265987 |
atatcattaattattactaagcaatgatgtatttttcgatcaatatgcttcctttttattaaaaaatatgaaaatataacatatagtaaatgatacaaca |
34265888 |
T |
|
| Q |
228 |
agaaactat-nnnnnnnngttgtataaaatctaagataattacttatagaatttcttaatcacgtgattaacaaatcagattcaatgtgcgactcatgct |
326 |
Q |
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| T |
34265887 |
agaaactataaaaaaaaagttgtataaaatctaagataattacttatagaatttcttaatcacgtgattaacaaatcagattcaatgtgtgactcatgct |
34265788 |
T |
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| Q |
327 |
tat |
329 |
Q |
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||| |
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| T |
34265787 |
tat |
34265785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 34267258 - 34267135
Alignment:
| Q |
1 |
attaagtaaaaaataagtacaaaaagttgaggggactaagacctaacccatgaaccatataatcatctctaaaagtgtattacaaagaaaagtaacaaaa |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34267258 |
attaaataaaaaataagtacaaaaagttgaggggactaagacctgacccatgaaccatataatcatctctaaaagtgtattacaaagaaaagtaacaaaa |
34267159 |
T |
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| Q |
101 |
gtggtatgtaaaaaacacaaatgt |
124 |
Q |
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|||| ||||||||||||||||||| |
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| T |
34267158 |
gtggcatgtaaaaaacacaaatgt |
34267135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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