View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405-Insertion-1 (Length: 986)
Name: NF4405-Insertion-1
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 846; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 846; E-Value: 0
Query Start/End: Original strand, 10 - 937
Target Start/End: Complemental strand, 31687925 - 31686998
Alignment:
| Q |
10 |
aaattcattaaccacttcagccaaataacatttggaaacaaaaatggagagtgttatatgtttggttctgcattgacaaaatttaattttgaaacaaaat |
109 |
Q |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31687925 |
aaattcataaactacttcagccaaataacatttggaaacaaaaatggagagtgttatatgtttggttctgcattgacaaaatttaattttgaaacaaaat |
31687826 |
T |
|
| Q |
110 |
tgattttaactgaaaaatagttgaatgtaaagtcaaatatgctaaaatcaactttaacgttataattaattctagacaataacctcccaaacatgatttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31687825 |
tgattttaactgaaaaatagttgaatgtaaagtcaaatatgctaaaatcaactttaacgttataatcaattctagacaataacctcccaaacatgatttt |
31687726 |
T |
|
| Q |
210 |
acctccacttaaaatagaaccaaatttacaccagtgtacatttggtctcagtaaacttgtcaaccactgtgattttgcaaaagatacaaaatgttgcttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31687725 |
acctccacttaaaatagaaccaaatttacaccagtgtacatttggtctcagtaaacttgtcaaccactgtgattttgcaaaagatacaaaatgttgcttt |
31687626 |
T |
|
| Q |
310 |
tgcataagctacaaagtgtaggctcaccgtgactctgacaaatctaatgtgatatcaaaccaaacatgaactaaatagcttattaattgataccttgcga |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31687625 |
tgcataagctacaaagtgtaggctcaccgtgactctgacaaatctaatgtgatatcaaaccaaacatgaactaaatagcttattaattgataccttgcga |
31687526 |
T |
|
| Q |
410 |
aggatctcccatggctcagtatatataagtggaacaactctagcaccaccagcttcaacaaatttaacataagaagcagcaatatagttagctccagttg |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31687525 |
aggatctcccatggctcagtatatataagtggaacaactctagcaccaccagcttcaacaaatttaacatatgaagcagcaatatagttagctccagttg |
31687426 |
T |
|
| Q |
510 |
cattactgagtcgaccagaggcaccatcgccggggtgactgacaattccaataaccggacggtaataaagactagcgtccggtgccggacagctcaccaa |
609 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
31687425 |
cattactgagtcgaccggaggcaccatcgccggggtgactgacaattccaataaccggacggtagtaaagactagcgtccggtgccggacagctcaccaa |
31687326 |
T |
|
| Q |
610 |
cgatgaatcacggtggagttgactcgggaggcggatgccagagtgggaattggtggtgtgaaagcattggaagattgagataaggaagagaaacaaaaca |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31687325 |
cgatgaatcacggtggagttgactcgggaggcggatgccagagtgggaattggtggcgtgaaagcattggaagattgagacaaggaagagaaacaaaaca |
31687226 |
T |
|
| Q |
710 |
actacgtttgacatgttgaaaaagtgattgattttcattactacatcactgttttgtttttatagtaactaattagtgtcgtt-ttttgactccatgata |
808 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
31687225 |
actacgtttgacatgttgaaaaagtgattgattttcattactacatcactgttttgtttttatagtaactaatcagtgtcgtttttttgactccatgata |
31687126 |
T |
|
| Q |
809 |
gaagctaaaaagcacgttttannnnnnnnngttacaaaagctgaaaaacacgttaaaaacatcactgtcataggacccacttcactctttggagtacaca |
908 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31687125 |
gaagctaaaaagcacgttttatttttttttgttacaaaagctgaaaaacacgtt-aaaacatcactgtcataggacccacttcactctttggagtacata |
31687027 |
T |
|
| Q |
909 |
ggataaatcattttcgttttttcaaaaca |
937 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31687026 |
ggataaatcattttcgttttttcaaaaca |
31686998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 398 - 600
Target Start/End: Complemental strand, 31693600 - 31693398
Alignment:
| Q |
398 |
gataccttgcgaaggatctcccatggctcagtatatataagtggaacaactctagcaccaccagcttcaacaaatttaacataagaagcagcaatatagt |
497 |
Q |
| |
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|||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || || ||||| | ||| |
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| T |
31693600 |
gataccttaagaagtatctcccatggctcagtatagataagtggaacaactctagcaccaccagcctccacaaatttaacgtatgaggcagccaagtagg |
31693501 |
T |
|
| Q |
498 |
tagctccagttgcattactgagtcgaccagaggcaccatcgccggggtgactgacaattccaataaccggacggtaataaagactagcgtccggtgccgg |
597 |
Q |
| |
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||| |||| ||||||||||| ||||||||||||||||| || || || |||| |||||| |||||||| |||| || || |||| ||||||||| || |
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| T |
31693500 |
aagcgtcagtagcattactgaggcgaccagaggcaccatcaccaggatggctgagaattccgataaccggctggtagtataggctagagtccggtgcagg |
31693401 |
T |
|
| Q |
598 |
aca |
600 |
Q |
| |
|
||| |
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|
| T |
31693400 |
aca |
31693398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 397 - 600
Target Start/End: Complemental strand, 31680917 - 31680714
Alignment:
| Q |
397 |
tgataccttgcgaaggatctcccatggctcagtatatataagtggaacaactctagcaccaccagcttcaacaaatttaacataagaagcagcaatatag |
496 |
Q |
| |
|
|||||||||| |||| |||||| |||||| ||||| || || ||||||||||||||||| |||||||||| ||||||||||| |||||||| || || |
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|
| T |
31680917 |
tgataccttgagaagtatctcctctggctcggtataaatgaggggaacaactctagcaccggcagcttcaacgaatttaacatacgaagcagcgatgtaa |
31680818 |
T |
|
| Q |
497 |
ttagctccagttgcattactgagtcgaccagaggcaccatcgccggggtgactgacaattccaataaccggacggtaataaagactagcgtccggtgccg |
596 |
Q |
| |
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||| |||| ||||||||||||||||| ||||| || |||||||| || ||||||||||| || ||||| |||| || ||| ||| |||||| || | |
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| T |
31680817 |
gaagcgtcagtagcattactgagtcgaccggaggcgccgtcgccgggatggctgacaattccgatgaccggctggtagtagagattagggtccggcgcgg |
31680718 |
T |
|
| Q |
597 |
gaca |
600 |
Q |
| |
|
|||| |
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|
| T |
31680717 |
gaca |
31680714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 940 - 986
Target Start/End: Complemental strand, 31686254 - 31686208
Alignment:
| Q |
940 |
aaaatctcccatccccgggcagaagatcacaattctattaaaatatc |
986 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
31686254 |
aaaatctcccatcccccggcagaagatcacaattctattaaaatatc |
31686208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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