View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405-Insertion-10 (Length: 781)
Name: NF4405-Insertion-10
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 731; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 8 - 781
Target Start/End: Complemental strand, 38645692 - 38644925
Alignment:
| Q |
8 |
acaagtactactaaaattaatttctttcatttaagcctgtggaagcaattttgtcaacctatattttatgatttgaataattcagattcacgattagctt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38645692 |
acaagtactactaaaattaatttctttcatttaagcttgtggaagcaactttgtcaacctatattttatgatttgaataattcagattcacgattagctt |
38645593 |
T |
|
| Q |
108 |
ctctctatatagagagtactcacgtgaatatcctagcaagtagtacctgtgtgagccattatttgataattatctaccatgaatgtgatgaattatgagc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38645592 |
ctctctatatagagagtactcacgtgaatatcctagcaagtagtacctgtgtgagccattatttgataattatctaccatgaatgtgatgaattatgagc |
38645493 |
T |
|
| Q |
208 |
aatttgattactcattcacccctccttacatgaaccagctgcatgagtgtaccttagaaaatttatcaccactcccagcagaagatctcttatctccaaa |
307 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38645492 |
aatttgattactcattcac------ttacatgaaccagctgcatgagtgtaccttagaaaatttatcaccactcccagcagaagatctcttatctccaaa |
38645399 |
T |
|
| Q |
308 |
cacaatcctagatgaaatattgtttgatcaagaccaatcgcaatatcacttatatccaaatacaatcctagacgaaatcttcgatcaagaagagtccatg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38645398 |
cacaatcctagatgaaatattgtttgatcaagaccaatcgcaatatcacttatatccaaatacaatcctagacgaaatcttcgatcaagaagagtccatg |
38645299 |
T |
|
| Q |
408 |
caaggattgttgcagcaacatacaaacctcgacttcaatatcataaatcatgaacaggcaatggctctaaagaatgaattgtgtggtggagttaccgaag |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38645298 |
caaggattgttgcagcaacatacaaacctcgacttcaatatcataaatcatgaacaggcaatggctctagagaatgaattgtgtggtggagttaccgaaa |
38645199 |
T |
|
| Q |
508 |
aaggccgcaaaaatgtgtttgtttcgagggaagaagaatcttattggaatgcagttcaagaagagctaatggaagagacaagtttagttgatcttttgct |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38645198 |
aaggccgcaaaaatgtgtttgtttcgagggaagaagaatcttattggaatgcagttcaagaagagctaatggaagagacatgtttagttgatcttttgct |
38645099 |
T |
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| Q |
608 |
gatgggagctgaagtcgttgaatcacagaatatgactctttagctaaccattttgtttcaagctgcatagttgagttgcagccatttcaaccaattcata |
707 |
Q |
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| T |
38645098 |
gatgggagctgaagtcgttgaatcacagaatatgactctttagctaaccattttgtttcaagctgcatagttgagttgcagccatttcaaccaattcata |
38644999 |
T |
|
| Q |
708 |
ctcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaatatctaatgaatcttcata |
781 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38644998 |
ctcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaatatctaatgaatcttcata |
38644925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 11 - 647
Target Start/End: Original strand, 38898823 - 38899445
Alignment:
| Q |
11 |
agtactactaaaattaatttctttcatttaagcctgtggaagcaattttgtcaacctatattttatgatttgaataattcagattcacgattagcttctc |
110 |
Q |
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||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||| | |
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| T |
38898823 |
agtactactaaaatttatttctttcatttaagcttatggaagcaattttgtcaacctatattttataatttgaatattttagattcacgattagcttccc |
38898922 |
T |
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| Q |
111 |
tctatatagagagtactcacgtgaatatcctagcaagtagtacctgtgtgagccattatttgataattatctaccatgaatgtgatgaattatgagcaat |
210 |
Q |
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| T |
38898923 |
tctatataaagagtactcacataaatattctagcaagtagtacctgtc--------------ataattatctaccatgaatgtgatggattatgagcaat |
38899008 |
T |
|
| Q |
211 |
ttgattactcattcacccctccttacatgaaccagctgcatgagtgtaccttagaaaatttatcaccactcccagcagaagatctcttatctccaaacac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| || |
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| T |
38899009 |
ttgattactcattcacccctccttacatgaaccagctgcatgagtgtagcttagaaaatttatcaccactccaagcagaagatctcttatttccaaatac |
38899108 |
T |
|
| Q |
311 |
aatcctagatgaaatattgtttgatcaagaccaatcgcaatatcacttatatccaaatacaatcctagacgaaatcttcgatcaagaagagtccatgcaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38899109 |
aatcctagatgaaatattgtttgatcaagaccaatcacaatatctctcatctccaaatacaatcctagacgaaatcttcgatcaagaagagtccatgcaa |
38899208 |
T |
|
| Q |
411 |
ggattgttgcagcaacatacaaacctcgacttcaatatcataaatcatgaacaggcaatggctctaaagaatgaattgtgtggtggagttaccgaagaag |
510 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||| |
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| T |
38899209 |
ggattgctgcagcaacatacaaacctcgacttcaatatcataaatcatgaacaggcaatggctctagagtatgaattgtgtggtggagttacagaaaaag |
38899308 |
T |
|
| Q |
511 |
gccgcaaaaatgtgtttgtttcgagggaagaagaatcttattggaatgcagttcaagaagagctaatggaagagacaagtttagttgatcttttgctgat |
610 |
Q |
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||||| ||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38899309 |
gccgcgaaaatgtgtttgtttcgagggaaaaagattcttattggaaggaagttcaagaagagttaatggaagagacaagtttagttgatcttttgctgat |
38899408 |
T |
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| Q |
611 |
gggagctgaagtcgttgaatcacagaatatgactctt |
647 |
Q |
| |
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|||||||||| | ||||||||| || ||||||||| |
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| T |
38899409 |
aggagctgaagctgctgaatcacaaaacatgactctt |
38899445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 644 - 781
Target Start/End: Original strand, 38656935 - 38657077
Alignment:
| Q |
644 |
tctttagctaaccattttgtttcaagctgcatagttgagt-----tgcagccatttcaaccaattcatactcagggatcatggtcatacttttagacttc |
738 |
Q |
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||||| |||||||| |||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||| |
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| T |
38656935 |
tctttggctaaccactttgtttcaaactgcatagttgagccatactgcagccatttcaaccaattc-tactcagagatcatgatcatacttctagacttc |
38657033 |
T |
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| Q |
739 |
atcaatctaaatcaactgatgtaat-atctaatgaatcttcata |
781 |
Q |
| |
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||||||||||||| |||||| |||| ||||||||| || ||||| |
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| T |
38657034 |
atcaatctaaatctactgatataataatctaatgattcatcata |
38657077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 688 - 763
Target Start/End: Complemental strand, 16805923 - 16805848
Alignment:
| Q |
688 |
gccatttcaaccaattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaat |
763 |
Q |
| |
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||||||||||| ||| |||||| ||| ||||| || |||| | ||| ||||||||||||||||||||| ||||||| |
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| T |
16805923 |
gccatttcaactaatgcatactaaggaatcattgtaatacatctagccttcatcaatctaaatcaactaatgtaat |
16805848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 700 - 772
Target Start/End: Complemental strand, 22769149 - 22769076
Alignment:
| Q |
700 |
aattcatactcagggatcatggtcatacttttagacttcatcaatctaaatcaactgatgtaat-atctaatga |
772 |
Q |
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|||||||||||||| ||||| ||| | | ||| ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
22769149 |
aattcatactcaggaatcattgtcgttgatctagccttcatcaatctaaatctactgatgtaatcatctaatga |
22769076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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