View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405-Insertion-12 (Length: 744)

Name: NF4405-Insertion-12
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405-Insertion-12
NF4405-Insertion-12
[»] chr6 (7 HSPs)
chr6 (9-257)||(21879813-21880061)
chr6 (320-522)||(21880124-21880321)
chr6 (586-710)||(21880752-21880877)
chr6 (585-639)||(1869249-1869303)
chr6 (588-647)||(22577305-22577364)
chr6 (592-646)||(13032350-13032404)
chr6 (592-637)||(32018607-32018652)
[»] chr2 (7 HSPs)
chr2 (585-687)||(17374628-17374730)
chr2 (584-679)||(4868941-4869037)
chr2 (585-684)||(11163743-11163843)
chr2 (584-655)||(1894737-1894808)
chr2 (584-655)||(17282664-17282735)
chr2 (584-684)||(34659578-34659682)
chr2 (592-653)||(30799268-30799329)
[»] chr3 (6 HSPs)
chr3 (592-684)||(3364198-3364291)
chr3 (585-662)||(893685-893762)
chr3 (591-639)||(20585547-20585595)
chr3 (591-687)||(18270417-18270513)
chr3 (592-647)||(50735386-50735441)
chr3 (592-647)||(50777414-50777469)
[»] chr8 (5 HSPs)
chr8 (592-687)||(20860618-20860714)
chr8 (586-687)||(5993937-5994039)
chr8 (591-655)||(6443329-6443393)
chr8 (592-647)||(10408145-10408200)
chr8 (593-639)||(20516253-20516299)
[»] chr5 (14 HSPs)
chr5 (599-687)||(27170821-27170909)
chr5 (592-687)||(1377547-1377643)
chr5 (592-687)||(26656047-26656143)
chr5 (592-687)||(26927634-26927730)
chr5 (585-679)||(7269967-7270062)
chr5 (584-659)||(18696317-18696392)
chr5 (593-676)||(9435985-9436069)
chr5 (591-647)||(21600516-21600572)
chr5 (584-647)||(6031071-6031134)
chr5 (591-647)||(38959331-38959387)
chr5 (584-651)||(6989152-6989219)
chr5 (592-680)||(1157890-1157980)
chr5 (591-637)||(18615538-18615584)
chr5 (588-646)||(36608346-36608404)
[»] chr4 (12 HSPs)
chr4 (587-655)||(47519174-47519242)
chr4 (593-687)||(24958260-24958355)
chr4 (585-647)||(31360796-31360858)
chr4 (584-662)||(34227695-34227773)
chr4 (593-655)||(39051741-39051803)
chr4 (591-639)||(52721863-52721911)
chr4 (591-658)||(28149720-28149787)
chr4 (593-655)||(3925946-3926008)
chr4 (584-637)||(14566745-14566798)
chr4 (593-638)||(18356796-18356841)
chr4 (593-638)||(18431966-18432011)
chr4 (620-661)||(23055005-23055046)
[»] chr1 (12 HSPs)
chr1 (591-662)||(11408518-11408589)
chr1 (592-687)||(6504452-6504548)
chr1 (592-687)||(615060-615156)
chr1 (584-660)||(25790950-25791026)
chr1 (584-686)||(34117411-34117514)
chr1 (585-686)||(27340287-27340389)
chr1 (591-671)||(27787274-27787354)
chr1 (591-639)||(39629189-39629237)
chr1 (591-646)||(15115635-15115690)
chr1 (591-646)||(15140151-15140206)
chr1 (591-637)||(15100877-15100923)
chr1 (592-642)||(34653210-34653260)
[»] scaffold0341 (1 HSPs)
scaffold0341 (592-687)||(6135-6231)
[»] chr7 (10 HSPs)
chr7 (585-655)||(11699068-11699138)
chr7 (593-639)||(26199187-26199233)
chr7 (593-655)||(36933799-36933861)
chr7 (592-687)||(3301744-3301841)
chr7 (585-685)||(29549909-29550010)
chr7 (586-642)||(1777892-1777948)
chr7 (591-639)||(47718832-47718880)
chr7 (593-655)||(3959113-3959175)
chr7 (593-639)||(15121948-15121994)
chr7 (592-661)||(21321530-21321599)
[»] scaffold0009 (1 HSPs)
scaffold0009 (593-687)||(53783-53878)
[»] scaffold0005 (1 HSPs)
scaffold0005 (584-637)||(250577-250630)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 1e-86; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 21879813 - 21880061
Alignment:
Q  9 tagcatcctctctagccatctcttctgatcatgtaccgatcaatttccnnnnnnntatttgcaaatccatcctttatatagtgaatgatgatgtgcannn 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||       
T  21879813 tagcatccgctctagccatctcttctgatcatgtaccgatcaatttccaaaaaa-tatttgcaaatccatcctttatatagtgaatgatgatgtgcattt 21879911  T
Q  109 nnnnaaaaattgaaactagaaattttctcccataataataacattgagagttccccaaatatgctccaataaataccccttcctctcaaggacatagccg 208  Q
         |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  21879912 tttataaaattaaaactataaattctctcccataataataacattgagagttccccaaatatgctccaataaataccccttcttctcaaggacaaagccg 21880011  T
Q  209 tgccctag-ccccaggccaaggagcagggaatgcaaatgcattgcatgtg 257  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  21880012 tgccctagcccccaggccaaggagcagggaatgcaaatacattgcatgtg 21880061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 320 - 522
Target Start/End: Original strand, 21880124 - 21880321
Alignment:
Q  320 tatgcaaacacaaataaaacaatgaatttccacatagagggtcaaaatgaccatttttgatgatttgttgtatggtgattaattcttggacatgggtcca 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  21880124 tatgcaaacacaaataaaacaatgaatttccacatagagggtcaaaatgaccatttttgatgatttattgtatggtgattaattcttggacaggggtcca 21880223  T
Q  420 ttctgaagttaattaaagtactatatgtttttatgtgatatgacgacatcaattttccatctatataatgacataatcactacgagactccatcaaccac 519  Q
    |||||||||||||| ||||||     |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  21880224 ttctgaagttaattcaagtac-----gtttttgtgtgatatgacgacatcaatgttccatctatataatgacataatcactacgagactccattaaccac 21880318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 586 - 710
Target Start/End: Original strand, 21880752 - 21880877
Alignment:
Q  586 aaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaagaacaacatataaaggatggatgg 685  Q
    ||||| ||||||| |||||||||||||  ||| |||||||||||||||||||||||| |||| ||||| | ||||||||||||||| |||||||||||||    
T  21880752 aaaaattaaaatgaaatttattaaaatcgcaatgaatcttaaccagcacaaggagtgctaggctaggaatcttaaagaacaacatacaaaggatggatgg 21880851  T
Q  686 ggct-ccatacacccgtgaatcaaag 710  Q
    |||| |||||||||||||||||||||    
T  21880852 ggctcccatacacccgtgaatcaaag 21880877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 585 - 639
Target Start/End: Original strand, 1869249 - 1869303
Alignment:
Q  585 aaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaagga 639  Q
    ||||| ||||||||||||||||||| || |||| |||||||||||||||||||||    
T  1869249 aaaaagctaaaatggaatttattaagataacaatgaatcttaaccagcacaagga 1869303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 588 - 647
Target Start/End: Original strand, 22577305 - 22577364
Alignment:
Q  588 aaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttagg 647  Q
    ||||||||||||||||||||||||| | || || || |||||||||||||||||| ||||    
T  22577305 aaactaaaatggaatttattaaaatcaaaatgagtcctaaccagcacaaggagtgctagg 22577364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 646
Target Start/End: Original strand, 13032350 - 13032404
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttag 646  Q
    ||||||| ||||||||||||| |||| ||||| ||||||||||||| | ||||||    
T  13032350 taaaatgaaatttattaaaatcacaatgaatcctaaccagcacaagaaatgttag 13032404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 637
Target Start/End: Complemental strand, 32018652 - 32018607
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaag 637  Q
    ||||||| ||||||||||||| |||| ||||| |||||||||||||    
T  32018652 taaaatgaaatttattaaaatcacaatgaatcctaaccagcacaag 32018607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 585 - 687
Target Start/End: Original strand, 17374628 - 17374730
Alignment:
Q  585 aaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaagaacaacatataaaggatggatg 684  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| | ||||||| ||||||| ||| ||| ||||||| ||||    
T  17374628 aaaaaactaaaatgaaatttattaaaatcacaatgaatcttaaccagcacaaggagtgttaagctaggagtcttaaagagcaatatacaaaggatagatg 17374727  T
Q  685 ggg 687  Q
    |||    
T  17374728 ggg 17374730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 584 - 679
Target Start/End: Original strand, 4868941 - 4869037
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggat 679  Q
    ||||||||||||||| |||||||||||||   || ||||||||| |||||||||||||| |||| ||||||| |||||| | ||||||| |||||||    
T  4868941 gaaaaaactaaaatgaaatttattaaaatcgaaatgaatcttaatcagcacaaggagtgctaggctaggagtcttaaagtagcaacatacaaaggat 4869037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 585 - 684
Target Start/End: Complemental strand, 11163843 - 11163743
Alignment:
Q  585 aaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggat 683  Q
    ||||||||||||||||||||||||| ||  | | ||||||||||||| ||| |||||| |||||||||||| |||||| |  |||||||||||||| |||    
T  11163843 aaaaaactaaaatggaatttattaacatcgcgatgaatcttaaccagtacagggagtgctaggttaggagtcttaaagtagtaacatataaaggatagat 11163744  T
Q  684 g 684  Q
    |    
T  11163743 g 11163743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 655
Target Start/End: Original strand, 1894737 - 1894808
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagt 655  Q
    |||||| ||||||| ||||||||||| ||  ||| |||| |||||||||||||||||||||||| |||||||    
T  1894737 gaaaaagctaaaatagaatttattaagatagcaatgaattttaaccagcacaaggagtgttaggctaggagt 1894808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 655
Target Start/End: Complemental strand, 17282735 - 17282664
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagt 655  Q
    ||||||| |||||||||||||||||| || ||||  ||||||||||||||||| ||||| |||| |||||||    
T  17282735 gaaaaaagtaaaatggaatttattaagataacaattaatcttaaccagcacaaagagtgctaggctaggagt 17282664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 684
Target Start/End: Original strand, 34659578 - 34659682
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggag---tgttaggttaggagttttaaag-aacaacatataaaggat 679  Q
    |||||| |||||||| |||||||||||||  ||| |||||||||||||||| |||||   || |||||||||||| |||||| | ||||||| |||||||    
T  34659578 gaaaaagctaaaatgaaatttattaaaatcgcaatgaatcttaaccagcacgaggagtgctgctaggttaggagtcttaaagtagcaacatacaaaggat 34659677  T
Q  680 ggatg 684  Q
     ||||    
T  34659678 agatg 34659682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 592 - 653
Target Start/End: Original strand, 30799268 - 30799329
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttagga 653  Q
    ||||||| |||||||||||||  ||| ||||||||||||||||||| ||||||||| |||||    
T  30799268 taaaatgaaatttattaaaatcgcaatgaatcttaaccagcacaagaagtgttaggctagga 30799329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 592 - 684
Target Start/End: Complemental strand, 3364291 - 3364198
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatg 684  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||||| |||| |||| ||||||| ||||    
T  3364291 taaaatggaatttattaaaattgcaatgaatcttaaccagcacaaggagtgttaggttatgagtcttaaagtaacagcatacaaaggatagatg 3364198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 585 - 662
Target Start/End: Complemental strand, 893762 - 893685
Alignment:
Q  585 aaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag 662  Q
    ||||| ||||||||||||||||||||||  |||  ||||||||||||||||||||||| |||| ||||||| ||||||    
T  893762 aaaaagctaaaatggaatttattaaaatcgcaataaatcttaaccagcacaaggagtgctaggctaggagtcttaaag 893685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 639
Target Start/End: Complemental strand, 20585595 - 20585547
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaagga 639  Q
    |||||||| ||||||||||||| |||| |||||||||||||||||||||    
T  20585595 ctaaaatgaaatttattaaaatcacaatgaatcttaaccagcacaagga 20585547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 687
Target Start/End: Complemental strand, 18270513 - 18270417
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaagaacaacatataaaggatggatgggg 687  Q
    |||||||||||||||||||||||  || ||||||||||| | ||||| | || |||| |  |||||||||| |  |||||| ||||||| |||||||    
T  18270513 ctaaaatggaatttattaaaattgaaatgaatcttaaccggtacaagaaatgctaggctgtgagttttaaatagtaacatacaaaggatagatgggg 18270417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 647
Target Start/End: Complemental strand, 50735441 - 50735386
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttagg 647  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| || ||||| ||||    
T  50735441 taaaatggagtttattaaaattgcaatgaatcttaaccagcaaaatgagtgctagg 50735386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 647
Target Start/End: Original strand, 50777414 - 50777469
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttagg 647  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| || ||||| ||||    
T  50777414 taaaatggagtttattaaaattgcaatgaatcttaaccagcaaaatgagtgctagg 50777469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 20860618 - 20860714
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatgggg 687  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||  |||||| |||||| | ||||||| ||||||| |||||||    
T  20860618 taaaatggaatttattaaaatcgcaatgaatcttaaccagcacaaggagtgttaggcgaggagtcttaaagtagcaacatacaaaggatagatgggg 20860714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 586 - 687
Target Start/End: Original strand, 5993937 - 5994039
Alignment:
Q  586 aaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatg 684  Q
    |||| ||||||||||||||||||||||  ||| ||||||||| |||||||||||||| |||| ||||||| |||||| | ||||||| ||||||| ||||    
T  5993937 aaaagctaaaatggaatttattaaaatcgcaatgaatcttaatcagcacaaggagtgctaggctaggagtcttaaagtagcaacatacaaaggatagatg 5994036  T
Q  685 ggg 687  Q
    |||    
T  5994037 ggg 5994039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 591 - 655
Target Start/End: Original strand, 6443329 - 6443393
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagt 655  Q
    |||||||| ||||||||||||| |||| ||||| |||||||||||||||||| |||| |||||||    
T  6443329 ctaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaaggagtgctaggctaggagt 6443393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 647
Target Start/End: Original strand, 10408145 - 10408200
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttagg 647  Q
    ||||||||||||||||||||| ||||  |||||||||||||| |||||||||||||    
T  10408145 taaaatggaatttattaaaatcacaataaatcttaaccagcaaaaggagtgttagg 10408200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 639
Target Start/End: Original strand, 20516253 - 20516299
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaagga 639  Q
    |||||||||||||||||||| |||  ||||| |||||||||||||||    
T  20516253 aaaatggaatttattaaaatcacattgaatcctaaccagcacaagga 20516299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 599 - 687
Target Start/End: Complemental strand, 27170909 - 27170821
Alignment:
Q  599 gaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaagaacaacatataaaggatggatgggg 687  Q
    ||||||||||||||  ||| |||||||||||||||||||||||| |||| ||||||| ||||| | ||||||| ||||||| |||||||    
T  27170909 gaatttattaaaatcgcaatgaatcttaaccagcacaaggagtgataggctaggagtcttaaatagcaacatacaaaggatagatgggg 27170821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 1377547 - 1377643
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatgggg 687  Q
    ||||||| |||||||| ||||  |||  |||||||||||||||||||| ||||||||||||||| |||||| ||||||||| ||| ||| |||||||    
T  1377547 taaaatgaaatttattcaaatcgcaattaatcttaaccagcacaaggaatgttaggttaggagtcttaaagtaacaacatacaaatgatagatgggg 1377643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 26656047 - 26656143
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatgggg 687  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||| | || |||| ||||||| |||||| | ||| ||| ||||||| |||||||    
T  26656047 taaaatggaatttattaaaatcgcaatgaatcttaaccagcacaagcaatgctaggctaggagtcttaaagtatcaatatacaaaggatagatgggg 26656143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 26927634 - 26927730
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatgggg 687  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||| | || |||| ||||||| |||||| | ||| ||| ||||||| |||||||    
T  26927634 taaaatggaatttattaaaatcgcaatgaatcttaaccagcacaagcaatgctaggctaggagtcttaaagtatcaatatacaaaggatagatgggg 26927730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 585 - 679
Target Start/End: Original strand, 7269967 - 7270062
Alignment:
Q  585 aaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggat 679  Q
    ||||| |||||||  |||||||||||||  ||| ||||||||||||||||||||| || |||| ||||||| |||||| | ||||||| |||||||    
T  7269967 aaaaagctaaaataaaatttattaaaatcgcaatgaatcttaaccagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaaggat 7270062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 659
Target Start/End: Original strand, 18696317 - 18696392
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagtttta 659  Q
    |||||| |||||||| |||||||||||||  ||| ||||||||||| |||||| ||| |||||| |||||||||||    
T  18696317 gaaaaagctaaaatgaaatttattaaaatggcaatgaatcttaaccggcacaacgagagttaggctaggagtttta 18696392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 676
Target Start/End: Original strand, 9435985 - 9436069
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaag 676  Q
    ||||| |||||||||||||| ||||||||||||||||| || ||||| |||||  ||||||||  ||||| | ||||||||||||    
T  9435985 aaaatagaatttattaaaatcacaaagaatcttaaccaacataaggaatgttatattaggagtcgtaaagtagcaacatataaag 9436069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 647
Target Start/End: Original strand, 21600516 - 21600572
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttagg 647  Q
    ||||||||||||||||||| ||  ||| ||||||||||||| |||||||||||||||    
T  21600516 ctaaaatggaatttattaagatagcaatgaatcttaaccagtacaaggagtgttagg 21600572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 584 - 647
Target Start/End: Complemental strand, 6031134 - 6031071
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttagg 647  Q
    ||||||| ||||||| |||||||||||||   || |||||||||||||||||| ||||||||||    
T  6031134 gaaaaaattaaaatgaaatttattaaaatcgaaatgaatcttaaccagcacaaagagtgttagg 6031071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 647
Target Start/End: Complemental strand, 38959387 - 38959331
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttagg 647  Q
    ||||||||||||||||||| ||  ||| |||||||||| ||||||||||||| ||||    
T  38959387 ctaaaatggaatttattaagatagcaatgaatcttaactagcacaaggagtgctagg 38959331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 651
Target Start/End: Original strand, 6989152 - 6989219
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttag 651  Q
    |||||| ||||||| ||||||||||| ||  ||| |||||||||||| || |||||||| ||||||||    
T  6989152 gaaaaacctaaaatagaatttattaagatagcaatgaatcttaaccaacataaggagtgctaggttag 6989219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 680
Target Start/End: Complemental strand, 1157980 - 1157890
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgt-taggttaggagttttaaag-aacaacatataaaggatg 680  Q
    |||||||||||||||||| ||  |||  |||||||||||||||||| ||||| |||| ||||||| ||| || | ||||| ||||||||||    
T  1157980 taaaatggaatttattaagatagcaataaatcttaaccagcacaagcagtgtctaggctaggagtcttacagtagcaacaaataaaggatg 1157890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 637
Target Start/End: Original strand, 18615538 - 18615584
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaag 637  Q
    |||||||||||||||||||||| || | ||||| |||||||||||||    
T  18615538 ctaaaatggaatttattaaaatcacgatgaatcctaaccagcacaag 18615584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 588 - 646
Target Start/End: Complemental strand, 36608404 - 36608346
Alignment:
Q  588 aaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttag 646  Q
    |||| ||||| |||||||||||||| | || ||||| ||||||||||||||| ||||||    
T  36608404 aaaccaaaattgaatttattaaaatcagaatgaatcctaaccagcacaaggaatgttag 36608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 587 - 655
Target Start/End: Complemental strand, 47519242 - 47519174
Alignment:
Q  587 aaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagt 655  Q
    ||||||||||||||||||||||| || ||||  ||||||||||||||||||||||||||||||| ||||    
T  47519242 aaaactaaaatggaatttattaagataacaataaatcttaaccagcacaaggagtgttaggttaagagt 47519174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 593 - 687
Target Start/End: Complemental strand, 24958355 - 24958260
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatgggg 687  Q
    ||||||||||||||||||||| ||| ||||| | ||||||||||||| || |||| ||||||| |||||| | ||||||| ||||||| |||||||    
T  24958355 aaaatggaatttattaaaattgcaatgaatcctgaccagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaaggatagatgggg 24958260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 585 - 647
Target Start/End: Complemental strand, 31360858 - 31360796
Alignment:
Q  585 aaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttagg 647  Q
    ||||| |||||||| |||||||||| || |||  |||||||| ||||||||||||||||||||    
T  31360858 aaaaagctaaaatgaaatttattaagataacactgaatcttagccagcacaaggagtgttagg 31360796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 34227773 - 34227695
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag 662  Q
    |||||||||||||||||| |||||||  |  ||| |||||||||||||||||| | |||||||| || |||| ||||||    
T  34227773 gaaaaaactaaaatggaacttattaatctcgcaatgaatcttaaccagcacaaagcgtgttaggctaagagtcttaaag 34227695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 655
Target Start/End: Original strand, 39051741 - 39051803
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagt 655  Q
    |||||||||||||||||||| |||| ||||  ||||||||||||||| |||||| ||| ||||    
T  39051741 aaaatggaatttattaaaatcacaatgaattctaaccagcacaaggaatgttagattatgagt 39051803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 639
Target Start/End: Complemental strand, 52721911 - 52721863
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaagga 639  Q
    |||||||| ||||||||||||| |||| ||||| |||||||||||||||    
T  52721911 ctaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaagga 52721863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 658
Target Start/End: Complemental strand, 28149787 - 28149720
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagtttt 658  Q
    ||||||| |||||||||||||| |||| || || ||||||||||||||| || |||  ||||||||||    
T  28149787 ctaaaattgaatttattaaaatcacaatgagtcctaaccagcacaaggaatgctagactaggagtttt 28149720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 655
Target Start/End: Original strand, 3925946 - 3926008
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagt 655  Q
    |||||||||||||||||||| |||| ||||  |||| |||||||||||||  || ||||||||    
T  3925946 aaaatggaatttattaaaatcacaatgaatactaacaagcacaaggagtgccagattaggagt 3926008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 637
Target Start/End: Complemental strand, 14566798 - 14566745
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaag 637  Q
    |||||| ||||||| |||| |||||||||  ||| |||||||||||||||||||    
T  14566798 gaaaaagctaaaatagaatgtattaaaatcgcaatgaatcttaaccagcacaag 14566745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 638
Target Start/End: Original strand, 18356796 - 18356841
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaagg 638  Q
    |||||||||||||||||||| |||| ||||| |||| |||||||||    
T  18356796 aaaatggaatttattaaaatcacaatgaatcctaactagcacaagg 18356841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 638
Target Start/End: Complemental strand, 18432011 - 18431966
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaagg 638  Q
    |||||||||||||||||||| |||| ||||| |||| |||||||||    
T  18432011 aaaatggaatttattaaaatcacaatgaatcctaactagcacaagg 18431966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 661
Target Start/End: Complemental strand, 23055046 - 23055005
Alignment:
Q  620 aatcttaaccagcacaaggagtgttaggttaggagttttaaa 661  Q
    |||||||||||||||||||||||||||| || |||| |||||    
T  23055046 aatcttaaccagcacaaggagtgttaggctaagagtcttaaa 23055005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 591 - 662
Target Start/End: Complemental strand, 11408589 - 11408518
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag 662  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||| |||| ||||||    
T  11408589 ctaaaatggaatttattaaaattgcaatgaatcataaccagcacaaggagtgctaggttatgagtcttaaag 11408518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 592 - 687
Target Start/End: Complemental strand, 6504548 - 6504452
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatgggg 687  Q
    |||||| |||||||||||||| |||| ||||  |||| |||||||||||||||||| || |||| |||| | | ||||||||||||||| |||||||    
T  6504548 taaaatagaatttattaaaatcacaatgaattctaactagcacaaggagtgttaggctatgagtcttaatgtagcaacatataaaggatagatgggg 6504452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 615060 - 615156
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatgggg 687  Q
    |||||||||||||||||||||   || |||||||||| |||||||| |||| || | ||||||| |||||| | ||||||| ||||||| |||||||    
T  615060 taaaatggaatttattaaaatcgaaatgaatcttaactagcacaagaagtgctatgctaggagtcttaaagtagcaacatacaaaggatagatgggg 615156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 660
Target Start/End: Original strand, 25790950 - 25791026
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaa 660  Q
    |||||| |||||||| |||||||||| || ||||  | |||||||||||||||||||||  ||||||||||| ||||    
T  25790950 gaaaaagctaaaatgaaatttattaagataacaataattcttaaccagcacaaggagtgccaggttaggagtcttaa 25791026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 584 - 686
Target Start/End: Original strand, 34117411 - 34117514
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagtttta-aagaacaacatataaaggatgga 682  Q
    |||||| |||||||| ||||||||||||  ||||  ||||||||||||||||||||||| || | || |||| ||| || | ||||||| ||||||| ||    
T  34117411 gaaaaagctaaaatgaaatttattaaaaccacaattaatcttaaccagcacaaggagtgctaagctaagagtcttacaatagcaacatacaaaggataga 34117510  T
Q  683 tggg 686  Q
    ||||    
T  34117511 tggg 34117514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 585 - 686
Target Start/End: Complemental strand, 27340389 - 27340287
Alignment:
Q  585 aaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggat 683  Q
    |||||||||||||| |||||||||||||  ||| ||||| ||||| |||||| ||||| |||  || |||| |||||| | ||||||| ||||||| |||    
T  27340389 aaaaaactaaaatgaaatttattaaaatggcaatgaatcctaaccggcacaaagagtgctagactacgagtcttaaagtagcaacataaaaaggatagat 27340290  T
Q  684 ggg 686  Q
    |||    
T  27340289 ggg 27340287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 671
Target Start/End: Complemental strand, 27787354 - 27787274
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaagaacaacata 671  Q
    |||||||| |||||||| |||  ||||||||||||| | |||||||||| || || | ||||||  |||||||||||||||    
T  27787354 ctaaaatgaaatttatttaaagcacaaagaatcttagcaagcacaaggaatgctaagctaggagacttaaagaacaacata 27787274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 639
Target Start/End: Original strand, 39629189 - 39629237
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaagga 639  Q
    |||||||||||||||||||||| |||| || || |||||||||||||||    
T  39629189 ctaaaatggaatttattaaaatcacaatgattcctaaccagcacaagga 39629237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 646
Target Start/End: Complemental strand, 15115690 - 15115635
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttag 646  Q
    |||||||||||||||||||||| |||| ||||| |||||||| |||| | ||||||    
T  15115690 ctaaaatggaatttattaaaatcacaatgaatcctaaccagcgcaagaaatgttag 15115635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 646
Target Start/End: Complemental strand, 15140206 - 15140151
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttag 646  Q
    |||||||||||||||||||||| |||| ||||| |||||||| |||| | ||||||    
T  15140206 ctaaaatggaatttattaaaatcacaatgaatcctaaccagcgcaagaaatgttag 15140151  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 637
Target Start/End: Complemental strand, 15100923 - 15100877
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaag 637  Q
    |||||||||||||||||||||| || | ||||| |||||||||||||    
T  15100923 ctaaaatggaatttattaaaatcacgatgaatcctaaccagcacaag 15100877  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 642
Target Start/End: Original strand, 34653210 - 34653260
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtg 642  Q
    |||||||||||||||||||||  ||| |||||||||| || ||||||||||    
T  34653210 taaaatggaatttattaaaatcgcaatgaatcttaacgagtacaaggagtg 34653260  T

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Target: scaffold0341 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 592 - 687
Target Start/End: Complemental strand, 6231 - 6135
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatgggg 687  Q
    |||||| |||||||||||||| |||| ||||  |||| |||||||||||||||||| || |||| |||| | | ||||||||||||||| |||||||    
T  6231 taaaatagaatttattaaaatcacaatgaattctaactagcacaaggagtgttaggctatgagtcttaatgtagcaacatataaaggatagatgggg 6135  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 585 - 655
Target Start/End: Complemental strand, 11699138 - 11699068
Alignment:
Q  585 aaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagt 655  Q
    |||||||||||||||||||||| || || |||| |||||||||||  ||||||||||| ||||||| ||||    
T  11699138 aaaaaactaaaatggaatttatgaagataacaatgaatcttaaccgccacaaggagtgctaggttaagagt 11699068  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 639
Target Start/End: Original strand, 26199187 - 26199233
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaagga 639  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||||    
T  26199187 aaaatggaatttattaaaattacaatgaatcctaacaagcacaagga 26199233  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 593 - 655
Target Start/End: Original strand, 36933799 - 36933861
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagt 655  Q
    |||||||||||||||||||| |||| ||||| |||| |||||||||| || |||| |||||||    
T  36933799 aaaatggaatttattaaaatcacaatgaatcctaactagcacaaggaatgctaggataggagt 36933861  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 687
Target Start/End: Original strand, 3301744 - 3301841
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatctt-aaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatgggg 687  Q
    ||||||| |||||||||||||  ||| ||||||| |||||||||||||||| ||| | ||| ||| |||||| | ||||||||||| ||| |||||||    
T  3301744 taaaatgaaatttattaaaatcgcaatgaatctttaaccagcacaaggagtattaaggtagaagtcttaaagtagcaacatataaatgatagatgggg 3301841  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 585 - 685
Target Start/End: Original strand, 29549909 - 29550010
Alignment:
Q  585 aaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggat 683  Q
    |||||||||||||  |||||||||||||  ||| ||||||||||| | | || |||||||  | ||||||| |||||| | ||||||||||||||| |||    
T  29549909 aaaaaactaaaataaaatttattaaaatcgcaatgaatcttaaccggtataaagagtgtttcgctaggagtcttaaagtagcaacatataaaggatagat 29550008  T
Q  684 gg 685  Q
    ||    
T  29550009 gg 29550010  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 642
Target Start/End: Original strand, 1777892 - 1777948
Alignment:
Q  586 aaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtg 642  Q
    |||| |||||||||||||| ||||||||  || ||||||||||||||| ||||||||    
T  1777892 aaaagctaaaatggaatttcttaaaattcaaatgaatcttaaccagcataaggagtg 1777948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 639
Target Start/End: Original strand, 47718832 - 47718880
Alignment:
Q  591 ctaaaatggaatttattaaaattacaaagaatcttaaccagcacaagga 639  Q
    |||||||| ||||||||||||| |||| ||||| |||||||||||||||    
T  47718832 ctaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaagga 47718880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 655
Target Start/End: Complemental strand, 3959175 - 3959113
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagt 655  Q
    |||||| ||||||||||||| |||| ||||| | ||||||||||| |||| |||| |||||||    
T  3959175 aaaatgaaatttattaaaatcacaatgaatcctgaccagcacaagaagtgctagggtaggagt 3959113  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 639
Target Start/End: Complemental strand, 15121994 - 15121948
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaagga 639  Q
    |||||| ||||||||||||| |||||||||| | |||||||||||||    
T  15121994 aaaatgaaatttattaaaatcacaaagaatcctgaccagcacaagga 15121948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 661
Target Start/End: Complemental strand, 21321599 - 21321530
Alignment:
Q  592 taaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaa 661  Q
    ||||||| ||||||||||||  |||| ||||| || | ||||||||||||| ||||||| |||| |||||    
T  21321599 taaaatgaaatttattaaaaacacaatgaatcctacctagcacaaggagtgataggttaagagtcttaaa 21321530  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 593 - 687
Target Start/End: Original strand, 53783 - 53878
Alignment:
Q  593 aaaatggaatttattaaaattacaaagaatcttaaccagcacaaggagtgttaggttaggagttttaaag-aacaacatataaaggatggatgggg 687  Q
    ||||| ||||| ||||||||||||| ||||| |||||||||||| | |||||||| |||||||  ||||| | ||||||| || |||| |||||||    
T  53783 aaaatagaattgattaaaattacaatgaatcataaccagcacaatgcgtgttaggctaggagtcgtaaagtagcaacatacaatggatagatgggg 53878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 637
Target Start/End: Original strand, 250577 - 250630
Alignment:
Q  584 gaaaaaactaaaatggaatttattaaaattacaaagaatcttaaccagcacaag 637  Q
    |||||| ||||||| |||| |||||||||  ||| |||||||||||||||||||    
T  250577 gaaaaagctaaaatagaatgtattaaaatcgcaatgaatcttaaccagcacaag 250630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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