View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405-Insertion-14 (Length: 656)

Name: NF4405-Insertion-14
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405-Insertion-14
NF4405-Insertion-14
[»] chr6 (13 HSPs)
chr6 (7-406)||(15311031-15311427)
chr6 (7-406)||(15316325-15316721)
chr6 (400-598)||(15310780-15310984)
chr6 (400-598)||(15316074-15316278)
chr6 (7-239)||(19232491-19232717)
chr6 (44-172)||(17079544-17079673)
chr6 (42-172)||(11061207-11061338)
chr6 (42-202)||(17874152-17874313)
chr6 (45-81)||(19227264-19227300)
chr6 (614-656)||(15310325-15310368)
chr6 (614-656)||(15315619-15315662)
chr6 (127-172)||(26526189-26526234)
chr6 (116-172)||(33019639-33019695)
[»] chr3 (20 HSPs)
chr3 (14-172)||(46908990-46909149)
chr3 (14-172)||(50543879-50544038)
chr3 (14-198)||(24124164-24124349)
chr3 (14-258)||(23818154-23818394)
chr3 (14-226)||(49500654-49500862)
chr3 (42-179)||(47536919-47537057)
chr3 (9-172)||(27925380-27925544)
chr3 (14-201)||(43121989-43122177)
chr3 (14-258)||(46665057-46665296)
chr3 (39-198)||(26845503-26845663)
chr3 (42-172)||(32093268-32093399)
chr3 (39-258)||(38898546-38898761)
chr3 (42-172)||(11639624-11639755)
chr3 (42-172)||(33121668-33121799)
chr3 (42-172)||(36635096-36635227)
chr3 (113-161)||(8695314-8695362)
chr3 (113-161)||(9047201-9047249)
chr3 (103-198)||(25341747-25341842)
chr3 (42-153)||(19221802-19221914)
chr3 (116-160)||(54558855-54558899)
[»] chr8 (6 HSPs)
chr8 (14-202)||(11155146-11155335)
chr8 (14-202)||(36156785-36156974)
chr8 (42-172)||(17658489-17658620)
chr8 (39-172)||(26031150-26031284)
chr8 (104-198)||(23679795-23679889)
chr8 (43-172)||(45256180-45256310)
[»] chr7 (12 HSPs)
chr7 (14-258)||(4076852-4077092)
chr7 (127-258)||(10282257-10282383)
chr7 (42-172)||(27941845-27941976)
chr7 (42-172)||(29113900-29114031)
chr7 (16-258)||(44784879-44785115)
chr7 (14-172)||(28060236-28060395)
chr7 (42-172)||(34231357-34231488)
chr7 (42-172)||(7459022-7459153)
chr7 (45-81)||(17804696-17804732)
chr7 (45-81)||(34518958-34518994)
chr7 (116-172)||(39060168-39060224)
chr7 (45-81)||(45987800-45987836)
[»] chr5 (10 HSPs)
chr5 (14-198)||(40089971-40090156)
chr5 (13-202)||(20591764-20591955)
chr5 (39-198)||(4922866-4923026)
chr5 (42-198)||(6048856-6049012)
chr5 (43-198)||(20209071-20209227)
chr5 (42-172)||(34874790-34874921)
chr5 (42-172)||(4416051-4416182)
chr5 (42-162)||(7001116-7001237)
chr5 (42-150)||(3727725-3727834)
chr5 (45-81)||(22095604-22095640)
[»] chr4 (16 HSPs)
chr4 (14-258)||(18935245-18935485)
chr4 (42-172)||(20395254-20395385)
chr4 (42-172)||(10563660-10563791)
chr4 (42-172)||(53779703-53779834)
chr4 (43-172)||(12881037-12881167)
chr4 (45-162)||(53487307-53487425)
chr4 (113-172)||(42823102-42823161)
chr4 (43-172)||(30274164-30274294)
chr4 (42-161)||(34322670-34322790)
chr4 (92-172)||(42777896-42777976)
chr4 (42-172)||(18106907-18107038)
chr4 (42-172)||(29554091-29554222)
chr4 (42-172)||(31863924-31864055)
chr4 (95-198)||(449683-449786)
chr4 (113-162)||(29213404-29213453)
chr4 (45-81)||(19644741-19644777)
[»] chr1 (15 HSPs)
chr1 (7-247)||(7397028-7397263)
chr1 (14-202)||(21335545-21335734)
chr1 (14-179)||(28098284-28098453)
chr1 (39-172)||(26720357-26720491)
chr1 (42-198)||(41181842-41181999)
chr1 (39-172)||(41061492-41061626)
chr1 (18-202)||(12173836-12174021)
chr1 (42-172)||(49968985-49969116)
chr1 (113-198)||(30111347-30111432)
chr1 (42-172)||(17707654-17707785)
chr1 (42-172)||(25591825-25591956)
chr1 (42-172)||(43810468-43810599)
chr1 (42-172)||(47107031-47107162)
chr1 (104-172)||(9903679-9903747)
chr1 (128-172)||(10711551-10711595)
[»] scaffold0179 (1 HSPs)
scaffold0179 (39-172)||(7186-7320)
[»] chr2 (6 HSPs)
chr2 (92-205)||(11026725-11026838)
chr2 (104-172)||(7075770-7075838)
chr2 (120-258)||(30273577-30273710)
chr2 (42-172)||(1379740-1379871)
chr2 (42-172)||(3000099-3000230)
chr2 (6-161)||(38182422-38182578)
[»] scaffold0007 (1 HSPs)
scaffold0007 (42-172)||(181787-181918)
[»] scaffold0308 (1 HSPs)
scaffold0308 (43-172)||(11736-11866)
[»] scaffold0108 (1 HSPs)
scaffold0108 (45-81)||(10659-10695)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 406
Target Start/End: Complemental strand, 15311427 - 15311031
Alignment:
Q  7 attcaataggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaa 105  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  15311427 attcaataggtggtggcaaagcaacgcggtcgttccttcagcttatttggcttctctgtgcttgagttttatggaatgagtgtaataataggctgtttaa 15311328  T
Q  106 taatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaat 205  Q
    |||||| |||||||||||||||||||||||  |||||||||||||||||||||||||   ||||||||||| || ||||||||||||||||| |||||||    
T  15311327 taatggtgtaactcctatgctcaggttgttgcataaagtaaaatatatgtctttagcccagatgaaatgcataaaggctacttttaggtttgacacaaat 15311228  T
Q  206 taaataggtggtgttcgagccctttacaatgtttaggcataacttaatggtttttgtttggcctaactgtctttgtgtatattcagttattcctttggca 305  Q
         |||||||||||||||| ||||||||| || ||||| |||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||    
T  15311227 -----aggtggtgttcgagccttttacaatgcttgggcatcacttaatggtttttgtttggcctaactgactctgtctatattcagtaattcctttggca 15311133  T
Q  306 gagcttgtgctattgggattgcttatttcttgtggttatatattccatttttgattgttc-gnnnnnnnnttcaatacttcacttaatggagttgtgttg 404  Q
     ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||          |||||||||||||||||||| |||||||||    
T  15311132 cagcttgtgctattgggattgcttgtttcttgtggttatatattctattttttattgttcaaaaaaaagattcaatacttcacttaatggtgttgtgttg 15311033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 406
Target Start/End: Complemental strand, 15316721 - 15316325
Alignment:
Q  7 attcaataggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaa 105  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  15316721 attcaataggtggtggcaaagcaacgcggtcgttccttcagcttatttggcttctctgtgcttgagttttatggaatgagtgtaataataggctgtttaa 15316622  T
Q  106 taatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaat 205  Q
    |||||| |||||||||||||||||||||||  |||||||||||||||||||||||||   ||||||||||| || ||||||||||||||||| |||||||    
T  15316621 taatggtgtaactcctatgctcaggttgttgcataaagtaaaatatatgtctttagcccagatgaaatgcataaaggctacttttaggtttgacacaaat 15316522  T
Q  206 taaataggtggtgttcgagccctttacaatgtttaggcataacttaatggtttttgtttggcctaactgtctttgtgtatattcagttattcctttggca 305  Q
         |||||||||||||||| ||||||||| || ||||| |||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||    
T  15316521 -----aggtggtgttcgagccttttacaatgcttgggcatcacttaatggtttttgtttggcctaactgactctgtctatattcagtaattcctttggca 15316427  T
Q  306 gagcttgtgctattgggattgcttatttcttgtggttatatattccatttttgattgttc-gnnnnnnnnttcaatacttcacttaatggagttgtgttg 404  Q
     ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||          |||||||||||||||||||| |||||||||    
T  15316426 cagcttgtgctattgggattgcttgtttcttgtggttatatattctattttttattgttcaaaaaaaagattcaatacttcacttaatggtgttgtgttg 15316327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 400 - 598
Target Start/End: Complemental strand, 15310984 - 15310780
Alignment:
Q  400 tgttggacaatgtggcttttgatgttaaatcgtctatataaattaagatcgttcnnnnnnnngtttcgcactatttcttctcctccgttacaaatacat- 498  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||     
T  15310984 tgtttgacaatgtggcttttgatgttaaatcgtctatataaattaagatcgttcttttttttgtttcgcactatttcttctcctccgttacaaatacata 15310885  T
Q  499 -----tcccaaagtaagtaaaaatatttctacattccttatcacttcggtgtgaaattcttcctatctttcaccattttttccacaaaggataggaagaa 593  Q
         |||||||| ||||||| |||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15310884 tacattcccaaagcaagtaaagatatttctactttccttatcacttcagggtgaaattcttcctttctttcaccattttttccacaaaggataggaagaa 15310785  T
Q  594 ttcaa 598  Q
    |||||    
T  15310784 ttcaa 15310780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 400 - 598
Target Start/End: Complemental strand, 15316278 - 15316074
Alignment:
Q  400 tgttggacaatgtggcttttgatgttaaatcgtctatataaattaagatcgttcnnnnnnnngtttcgcactatttcttctcctccgttacaaatacat- 498  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||     
T  15316278 tgtttgacaatgtggcttttgatgttaaatcgtctatataaattaagatcgttcttttttttgtttcgcactatttcttctcctccgttacaaatacata 15316179  T
Q  499 -----tcccaaagtaagtaaaaatatttctacattccttatcacttcggtgtgaaattcttcctatctttcaccattttttccacaaaggataggaagaa 593  Q
         |||||||| ||||||| |||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15316178 tacattcccaaagcaagtaaagatatttctactttccttatcacttcagggtgaaattcttcctttctttcaccattttttccacaaaggataggaagaa 15316079  T
Q  594 ttcaa 598  Q
    |||||    
T  15316078 ttcaa 15316074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 19232717 - 19232491
Alignment:
Q  7 attcaataggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaa 105  Q
    |||||| ||||||||||||||||| | | || ||| ||||||| |||||||| || ||||  ||||| ||||||||||||||||| |||| | |||||||    
T  19232717 attcaacaggtggtggcaaagcaaagaggtcattctttcagctcatttggctcctttgtgtatgggtcttatggaatgagtgtaataataaggtgtttaa 19232618  T
Q  106 taatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaat 205  Q
    |||||  ||||||||||| ||||||||||| |||||||| ||  || ||||| |||  ||| |||||  ||||| |||||| |||| ||||||||         
T  19232617 taatgttgtaactcctattctcaggttgttggataaagtgaa--atgtgtctctagactggttgaaagccaaaaaggctacatttatgtttggca----- 19232525  T
Q  206 taaataggtggtgttcgagccctttacaatgttt 239  Q
    |  ||||||||||||||| |||||||||||||||    
T  19232524 tggataggtggtgttcgaaccctttacaatgttt 19232491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 17079544 - 17079673
Alignment:
Q  44 tcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagataaa 142  Q
    |||||||||||||||  | || | || |||||||||||||||  |||| || ||||| || |||||||  |||||| |||| | ||||||||||||||||    
T  17079544 tcagcttatttggctcttgtgcgtttaggttttatggaatgaacgtaataacaggcttttcaataatgttgtaacttctattcccaggttgttagataaa 17079643  T
Q  143 gtaaaatatatgtctttagcttggatgaaa 172  Q
    || ||||||||||||||||| ||| |||||    
T  17079644 gttaaatatatgtctttagcctggttgaaa 17079673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 11061207 - 11061338
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | |||| |||||||||| ||  |||| || ||||| || |||||||  ||||||||||| | ||||||||||||||    
T  11061207 cttcagcttatttggctattgtgcgtttggattttatggaacgaacgtaataacaggcttttcaataatgttgtaactcctattcccaggttgttagata 11061306  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||| ||||| ||| |||||    
T  11061307 aagttaaatatatgtccttagcctggttgaaa 11061338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 17874152 - 17874313
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||| | |||| |||| |||||||||| ||  | || || |||||||| || ||||  || ||| ||||   ||||||||||||||    
T  17874152 cttcagcttatttggcttttgtgtgtttggattttatggaacgaacgcaataacaggctgttcaaaaatgttgtcacttctatttccaggttgttagata 17874251  T
Q  141 aagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcaca 202  Q
    |||| |||||| |||||||||| ||| |||||  |||||  | |  ||||||||||||||||    
T  17874252 aagttaaatatttgtctttagcctggttgaaagccaaaaaagttgtttttaggtttggcaca 17874313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 19227300 - 19227264
Alignment:
Q  45 cagcttatttggcttctctgtgcttgggttttatgga 81  Q
    ||||||||||||||||| |||||||||||||||||||    
T  19227300 cagcttatttggcttctttgtgcttgggttttatgga 19227264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 614 - 656
Target Start/End: Complemental strand, 15310368 - 15310325
Alignment:
Q  614 ttctactttatgatgtattcttttccatttacc-ttgtgttcca 656  Q
    |||||||||||||| |||||||||||||||||| ||||||||||    
T  15310368 ttctactttatgatatattcttttccatttacctttgtgttcca 15310325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 614 - 656
Target Start/End: Complemental strand, 15315662 - 15315619
Alignment:
Q  614 ttctactttatgatgtattcttttccatttacc-ttgtgttcca 656  Q
    |||||||||||||| |||||||||||||||||| ||||||||||    
T  15315662 ttctactttatgatatattcttttccatttacctttgtgttcca 15315619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 26526234 - 26526189
Alignment:
Q  127 caggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||||||||||||||||| |||| |||||||||||| ||| |||||    
T  26526234 caggttgttagataaagttaaatttatgtctttagcatggttgaaa 26526189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 33019695 - 33019639
Alignment:
Q  116 actcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||||| ||| ||||||| | ||||||||||||||| ||||||||| |||| |||||    
T  33019695 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaa 33019639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 46908990 - 46909149
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| ||||||| |||| | || |||||||||||||||||||      
T  46908990 aggtggtggcaaagcaacgcggttgttccttcagcttatttggcttctttgtgcttgggtgttatggactgagcgaaacaataggctgtttaataatgtt 46909089  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    ||||||||||||| || | |||| |||||||| ||||||||||||||||| |||||||||    
T  46909090 gtaactcctatgcccatgctgttggataaagttaaatatatgtctttagcctggatgaaa 46909149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 50544038 - 50543879
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    ||||||||| |||||||| ||| | ||||||||||||||||||||| | || | ||||||||||||||| |||||||| |||||| | || |||||||      
T  50544038 aggtggtggtaaagcaactcgagccttccttcagcttatttggcttttgtgcgtttgggttttatggaacgagtgtaataataggttcttcaataatgtt 50543939  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    || ||| |||||| |||||||||||||||||| ||||||||||||||||| ||| |||||    
T  50543938 gtcacttctatgcccaggttgttagataaagttaaatatatgtctttagcctggttgaaa 50543879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 24124164 - 24124349
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    |||||||||||||||||| ||  | ||||||||||||||||| ||| | || | ||||||||||||||||||| |||| || || || ||||||||||      
T  24124164 aggtggtggcaaagcaactcgcgccttccttcagcttatttgacttttgtgcgtttgggttttatggaatgagcgtaataacagactctttaataatgtt 24124263  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttgg 198  Q
    ||||||  ||| | || ||||||||||||||| ||||||||||||||||| ||| |||||  ||||| || |  ||||||||||||    
T  24124264 gtaacttatattcccatgttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttgg 24124349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 23818394 - 23818154
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    ||||||||||| |||||  || || ||||||||||||||||||||  | || | |||||| |||||||||||| | || |||||| | || |||||||      
T  23818394 aggtggtggcagagcaaaacggtcattccttcagcttatttggctattgtgcgtttgggtcttatggaatgagcgcaataataggtttttcaataatgtt 23818295  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaattaaatag 212  Q
    | ||| ||||| | |||||||||||||||||| |||||||||||||| || ||||| |||  ||| | |||| | ||||||||||||||     | ||||    
T  23818294 gcaacccctattcccaggttgttagataaagtgaaatatatgtcttttgcctggataaaagccaagaaggctgcctttaggtttggcac-----atatag 23818200  T
Q  213 gtggtgttcgagccctttacaatgtttaggcataacttaatggttt 258  Q
    ||||||||||||||| || |||||  | ||||| || |||||||||    
T  23818199 gtggtgttcgagcccgtttcaatgcatgggcatcacataatggttt 23818154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 49500654 - 49500862
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    ||||||||||| |||||  || || ||||||||||||||||||||  | || | |||||| |||||||||||| | || |||||| | || |||||||      
T  49500654 aggtggtggcagagcaaaacggtcattccttcagcttatttggctattgtgcgtttgggtcttatggaatgagcgcaataataggtttttcaataatgtt 49500753  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaattaaatag 212  Q
    ||||| ||||| | |||||||||| ||||||| ||||||||| ||||||| |||||||||  ||| | |||||| |||| ||||||||     | |||||    
T  49500754 gtaacccctattcccaggttgttatataaagtgaaatatatgcctttagcctggatgaaagccaagaaggctacctttaagtttggca-----tcaatag 49500848  T
Q  213 gtggtgttcgagcc 226  Q
    ||||||||||||||    
T  49500849 gtggtgttcgagcc 49500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 47537057 - 47536919
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | |||| ||||||||||||||| ||  |||| || || || || |||||||  |||||| |||| | ||||||||||||||    
T  47537057 cttcagcttatttggctcttgtgtgtttgggttttatggaacgaacgtaataacagacttttcaataatgttgtaacttctattcccaggttgttagata 47536958  T
Q  141 aagtaaaatatatgtctttagcttggatgaaatgcaaaa 179  Q
    |||| ||||||||||||||||| ||| ||||| ||||||    
T  47536957 aagttaaatatatgtctttagcctggttgaaaggcaaaa 47536919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 27925380 - 27925544
Alignment:
Q  9 tcaataggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaata 107  Q
    |||| ||||||||| ||||||||||| || |||||||||||||||||||| || |||   ||||||| ||||| |||   ||| |||||||||| ||| |    
T  27925380 tcaacaggtggtggtaaagcaacgcggtctttccttcagcttatttggctcctttgtatctgggtttcatggattgaacataataataggctgtataaca 27925479  T
Q  108 atggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    ||   |||||||||||   ||||||||| ||||||||||| |||||||| |||  ||||||||||    
T  27925480 atcttgtaactcctattaccaggttgttggataaagtaaagtatatgtcattatgttggatgaaa 27925544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 43121989 - 43122177
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    ||||||||||| |||||  || || ||||||||||||||||||||  | || | |||||| ||||| |||||| | || |||||| | || |||||||      
T  43121989 aggtggtggcagagcaaaacggtcattccttcagcttatttggctattgtgcgtttgggtcttatgaaatgagcgcaataataggtttttcaataatgtt 43122088  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcac 201  Q
    ||||| ||||| |  |||||||| |||||||| ||||||||||||||||| | |||||||  ||| | |||| | ||||||||||||||    
T  43122089 gtaacccctattcctaggttgttggataaagtgaaatatatgtctttagcctagatgaaagccaagaaggctgcctttaggtttggcac 43122177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 46665296 - 46665057
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    ||||||||||| |||||  || || |||||| || ||||||||||  | || | |||||| |||||||||||| | || |||||  | || |||||||      
T  46665296 aggtggtggcagagcaaaacggtcattcctttagtttatttggctattttgcgtttgggtcttatggaatgagcgcaataatagatttttcaataatgtt 46665197  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaattaaatag 212  Q
    ||||| ||| |  ||||||||||||||||||| ||||||||||||||||| |||||||||  ||| | |||| | ||||||||||||||       ||||    
T  46665196 gtaacccctgtt-tcaggttgttagataaagtgaaatatatgtctttagcctggatgaaagccaagaaggctgcctttaggtttggcac-----cgatag 46665103  T
Q  213 gtggtgttcgagccctttacaatgtttaggcataacttaatggttt 258  Q
    ||||||||||||| | || ||||| || ||||| || |||||||||    
T  46665102 gtggtgttcgagctcgtttcaatgcttgggcatcacataatggttt 46665057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 26845663 - 26845503
Alignment:
Q  39 ttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttag 137  Q
    ||||||||||| ||||||||| | ||||  |||||||||||||||||  |||| || || || || |||||||  || ||| |||| ||||||||||||     
T  26845663 ttccttcagctgatttggcttttgtgtgtatgggttttatggaatgaacgtaataacagactcttcaataatgttgttacttctattctcaggttgttac 26845564  T
Q  138 ataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttgg 198  Q
    ||||||| |||| |||||||||||| ||| |||||  ||||| || |  ||||||||||||    
T  26845563 ataaagttaaatttatgtctttagcatggttgaaagccaaaaaggttgtttttaggtttgg 26845503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 32093268 - 32093399
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||| ||||||||||| ||  |||| || ||||| || |||||||  |||||| |||| | ||||||||||||||    
T  32093268 cttcagcttatttggctcttgtgcgtttgagttttatggaacgaacgtaataacaggcttttcaataatgttgtaacttctattcccaggttgttagata 32093367  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  32093368 aagttaaatatatgtctttagcctggttgaaa 32093399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 39 - 258
Target Start/End: Complemental strand, 38898761 - 38898546
Alignment:
Q  39 ttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttag 137  Q
    ||||||||||||||||| ||  | |||| |||||| ||||| |||||| | || |||||| | || |||||||  ||||| |||||   ||| |||||||    
T  38898761 ttccttcagcttatttgactattgtgtgtttgggtcttatgaaatgagcgcaataataggtttttcaataatgttgtaacccctatttccagattgttag 38898662  T
Q  138 ataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaattaaataggtggtgttcgagccctttacaatgt 237  Q
    ||||||| ||||||||||||||||| | |||||||  ||| | || | | |||||||||| |||     |||||| |||||||||||||| || |||||     
T  38898661 ataaagtgaaatatatgtctttagcctagatgaaagtcaagaaggttgcctttaggtttgacac-----aaatagctggtgttcgagcccgtttcaatgc 38898567  T
Q  238 ttaggcataacttaatggttt 258  Q
    || ||||| || |||| ||||    
T  38898566 ttgggcatcacataatagttt 38898546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 11639755 - 11639624
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||||||||||||||| ||  |||| || | | | || |||||||  |||||| |||| | ||||||||||||||    
T  11639755 cttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacaaggttttcaataatgttgtaacttctattcccaggttgttagata 11639656  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  11639655 aagttaaatatatgtctttagcctggttgaaa 11639624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 33121668 - 33121799
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||||||||||||||| ||  |||| || ||||| || ||||||   |||||| |||| | || |||||||||||    
T  33121668 cttcagcttatttggctattgtgcgtttgggttttatggaacgaacgtaacaacaggcttttcaataatattgtaacttctattcccaagttgttagata 33121767  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  33121768 aagttaaatatatgtctttagcctggttgaaa 33121799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 36635227 - 36635096
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||| |||||||| || || ||||| || | ||| ||||||||||  |||||| |||| | |||||||||| | |    
T  36635227 cttcagcttatttggctcttgtgcgtttgagttttatgaaacgaatgtaataacaagctttttaataatgttgtaacttctattcccaggttgttaaaca 36635128  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  36635127 aagttaaatatatgtctttagcctggttgaaa 36635096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 8695314 - 8695362
Alignment:
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttag 161  Q
    |||||| |||| | |||||||||||||||||| ||||||||||||||||    
T  8695314 gtaacttctattcccaggttgttagataaagttaaatatatgtctttag 8695362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 9047201 - 9047249
Alignment:
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttag 161  Q
    |||||| |||| | |||||||||||||||||| ||||||||||||||||    
T  9047201 gtaacttctattcccaggttgttagataaagttaaatatatgtctttag 9047249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 25341747 - 25341842
Alignment:
Q  103 taataatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttgg 198  Q
    ||||||||  |||||| |||| | || ||||||||||||| | ||||||||||||||||| ||| |||||  ||||| || |  ||||||||||||    
T  25341747 taataatgtggtaacttctattcccaagttgttagataaaattaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttgg 25341842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 19221914 - 19221802
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    ||||||||||||| |||  | || | ||||||||||||||| ||  |||| || || || || |||||||  |||||| |||| | ||||||||||||||    
T  19221914 cttcagcttatttagctcttgtgcgtttgggttttatggaacgaacgtaataacagacttttcaataatgttgtaacttctattcccaggttgttagata 19221815  T
Q  141 aagtaaaatatat 153  Q
    |||| ||||||||    
T  19221814 aagttaaatatat 19221802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 54558855 - 54558899
Alignment:
Q  116 actcctatgctcaggttgttagataaagtaaaatatatgtcttta 160  Q
    ||||||||||  | |||||||||||||||||||||| ||||||||    
T  54558855 actcctatgcctaagttgttagataaagtaaaatatttgtcttta 54558899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 11155335 - 11155146
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||  | || |  ||||| |||||||||||| | || |||||||| || |||||||      
T  11155335 aggtggtggcaaagcaaagcgatcattccttcaacttatttggctattgtgcgtgtgggtcttatggaatgagcgcaataataggcttttcaataatgtt 11155236  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcaca 202  Q
    |||||||||||||  |||||| |||||||||| |||||| ||||||||||||| ||||||| ||||| |||| | |||| ||||||||||    
T  11155235 gtaactcctatgcctaggttgctagataaagtgaaatatttgtctttagcttgtatgaaatccaaaaaggctgcctttaagtttggcaca 11155146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 36156974 - 36156785
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    ||||||||||||||||| | |||| |||||||| |||||||||||  | || |  ||||| ||||| |||||| | || |||||||| || |||||||      
T  36156974 aggtggtggcaaagcaaagtgatcattccttcaacttatttggctattgtgcgtgtgggtcttatgcaatgagcgcaataataggcttttcaataatgtt 36156875  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcaca 202  Q
    |||| ||||||||  |||||| |||||||||| |||||| |||||||||  |||||||||| ||||| |||| | |||| ||||||||||    
T  36156874 gtaagtcctatgcctaggttgctagataaagtgaaatatttgtctttagtctggatgaaatccaaaaaggctgcctttaagtttggcaca 36156785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 17658620 - 17658489
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||||||||||||||| ||  |||| || ||||| || |||| ||  ||||||||||| | ||||||||||||||    
T  17658620 cttcagcttatttggctattgtgcgtttgggttttatggaacgaacgtaataacaggcttttcaatattgttgtaactcctattcccaggttgttagata 17658521  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  17658520 aagttaaatatatgtctttagcctggttgaaa 17658489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 26031284 - 26031150
Alignment:
Q  39 ttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttag 137  Q
    ||||||||||| ||||| ||| | |||| ||| ||||||||||||||  |||| || || || ||||||||||  || ||| |||| | |||||||||||    
T  26031284 ttccttcagctgatttgacttttgtgtgtttgagttttatggaatgaacgtaataacagactctttaataatgttgttacttctattcccaggttgttag 26031185  T
Q  138 ataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    ||||||| |||| |||||||||||| ||| |||||    
T  26031184 ataaagttaaatttatgtctttagcatggctgaaa 26031150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 23679889 - 23679795
Alignment:
Q  104 aataatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttgg 198  Q
    |||||||  |||||| |||| | |||||||||||||||||| ||||||||||||||||| ||| |||||  ||||| || |  ||||||||||||    
T  23679889 aataatgttgtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttgg 23679795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 45256180 - 45256310
Alignment:
Q  43 ttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaaa-ataggctgtttaataatggcgtaactcctatgctcaggttgttagataa 141  Q
    ||||||||||||||||  | |||| ||||||||||||||| ||    ||  | ||| |||| |||||||  |||||| |||| | |||||||||||||||    
T  45256180 ttcagcttatttggctcttgtgtgtttgggttttatggaacgaacacaatgacaggttgttcaataatgtggtaacttctattcccaggttgttagataa 45256279  T
Q  142 agtaaaatatatgtctttagcttggatgaaa 172  Q
    | | ||||||||||||||||| ||| |||||    
T  45256280 aattaaatatatgtctttagcctggttgaaa 45256310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 4077092 - 4076852
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||  | |||| ||||||||||||||||||| |||| || ||||| ||||| ||||      
T  4077092 aggtggtggcaaagcaactcgcaccttccttcagcttatttggctgttgtgtgtttgggttttatggaatgagcgtaataacaggctctttaaaaatgtt 4076993  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaattaaatag 212  Q
    |||||| |||| | ||||||| || ||||||| ||||||||||||||||| ||| |||||   |||| || |  |||||||||||| ||     | |||     
T  4076992 gtaacttctattcccaggttgctaaataaagttaaatatatgtctttagcctggttgaaagctaaaaaggttgtttttaggtttggtac-----agataa 4076898  T
Q  213 gtggtgttcgagccctttacaatgtttaggcataacttaatggttt 258  Q
    ||||||||| || || || |||||||| ||||| ||||||||||||    
T  4076897 gtggtgttcaagtccctttcaatgtttgggcatcacttaatggttt 4076852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 127 - 258
Target Start/End: Original strand, 10282257 - 10282383
Alignment:
Q  127 caggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaattaaataggtggtgttcgagcc 226  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||  ||||| |||| | ||||||||||||||     | ||||||||||||||||||    
T  10282257 caggttgttagataaagtgaaatatatgtctttagcctggatgaaagccaaaaaggctgcctttaggtttggcac-----agataggtggtgttcgagcc 10282351  T
Q  227 ctttacaatgtttaggcataacttaatggttt 258  Q
    | || ||||| || ||||| || |||||||||    
T  10282352 cgtttcaatgcttgggcatcacataatggttt 10282383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 27941845 - 27941976
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||| ||||||||||| ||||||||||| ||||||| |||  |||| ||||||||||| ||||||    | ||||||||||  |||||||| || |    
T  27941845 cttcagctcatttggcttctttgtgcttgggtattatggactgaacgtaataataggctgttcaataattctattactcctatgcctaggttgttggaca 27941944  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    ||||||||||  |||||||||||||| |||||    
T  27941945 aagtaaaatacttgtctttagcttggttgaaa 27941976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 29113900 - 29114031
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | |||| ||||||||||||||| ||  |||| || ||||| || |||||||  |||||| | || | ||||||||||||||    
T  29113900 cttcagcttatttggctcttgtgtgtttgggttttatggaacgaacgtaataacaggcttttcaataatgttgtaacttcaattcccaggttgttagata 29113999  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  29114000 aagtcaaatatatgtctttagcctggttgaaa 29114031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 44784879 - 44785115
Alignment:
Q  16 gtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgt 114  Q
    ||||||||||||||| ||| || ||||||||||||||||||||  | || |  |||||||||||    ||||| || |||||| | || |||||||  ||    
T  44784879 gtggtggcaaagcaaagcggtcattccttcagcttatttggctattgtgcgtgtgggttttatg--tcgagtgcaataataggtttttcaataatgttgt 44784976  T
Q  115 aactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaattaaataggt 214  Q
    ||||| |||||  |||||| |||||||||| |||||| |||||||||  |  ||||||| ||||| |||| | |||| ||||| |||     | ||||||    
T  44784977 aactcttatgcctaggttgctagataaagtgaaatatttgtctttagtctcaatgaaatccaaaaaggcttcctttaagtttgacac-----agataggt 44785071  T
Q  215 ggtgttcgagccctttacaatgtttaggcataacttaatggttt 258  Q
    ||||||| || || || ||||| |||||||| ||||||||||||    
T  44785072 ggtgttcaagtccgtttcaatgcttaggcatcacttaatggttt 44785115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 28060395 - 28060236
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    ||||||||| |||||||| ||| | |||||| |||||||||||||| | || | |||  |||||||||| ||  |||| || || || || || |||       
T  28060395 aggtggtggtaaagcaactcgagctttcctttagcttatttggcttttgtgcgtttgaattttatggaacgaacgtaataacagactcttcaacaatatt 28060296  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||||| |||| | |||||||||||||||||| ||||||||||||||||| ||| |||||    
T  28060295 gtaacttctattcccaggttgttagataaagttaaatatatgtctttagcctggttgaaa 28060236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 34231488 - 34231357
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||| ||||||||||| ||  |||| || ||||| || |||||||  |||||| | || | ||||||||||||||    
T  34231488 cttcagcttatttggctcttgtgcgtttgagttttatggaacgaacgtaataacaggcttttcaataatgttgtaacttcaattcccaggttgttagata 34231389  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  34231388 aagttaaatatatgtctttagcctggttgaaa 34231357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 7459022 - 7459153
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||| | ||||  || ||||||||||| ||  | || || ||||| || || ||||  |||||| |||| | ||||||||||||||    
T  7459022 cttcagcttatttggcttttgtgtgtgtgagttttatggaacgaacgcaataacaggcttttcaaaaatgttgtaacttctattcccaggttgttagata 7459121  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| |||||| |||||||||| ||| |||||    
T  7459122 aagttaaatatttgtctttagcctggttgaaa 7459153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 17804732 - 17804696
Alignment:
Q  45 cagcttatttggcttctctgtgcttgggttttatgga 81  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  17804732 cagcttatttggcttctctgtgcctgggtcttatgga 17804696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 34518958 - 34518994
Alignment:
Q  45 cagcttatttggcttctctgtgcttgggttttatgga 81  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  34518958 cagcttatttggcttctttgtgcctgggttttatgga 34518994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 39060168 - 39060224
Alignment:
Q  116 actcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    ||||||||||  |||||||| || |||||||||||  |||||||||||||| |||||    
T  39060168 actcctatgcctaggttgttggacaaagtaaaatacttgtctttagcttggttgaaa 39060224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 45987836 - 45987800
Alignment:
Q  45 cagcttatttggcttctctgtgcttgggttttatgga 81  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  45987836 cagcttatttggcttctttgtgcctgggttttatgga 45987800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 8e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 40090156 - 40089971
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    |||||||||||||||||  ||| | ||||||||||||||||||||| | ||   ||||||| ||||||| ||| |||| || ||||| || |||||||      
T  40090156 aggtggtggcaaagcaattcgagccttccttcagcttatttggcttttgtgctgttgggttctatggaacgagcgtaataacaggcttttcaataatgtt 40090057  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttgg 198  Q
    |||||| |||| | |||||||||||||||||| ||||||||||||||||||||| |||||  ||||| || |  ||||||||||||    
T  40090056 gtaacttctattcccaggttgttagataaagtcaaatatatgtctttagcttggttgaaagccaaaaaggttggttttaggtttgg 40089971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 20591955 - 20591764
Alignment:
Q  13 taggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaa-taatg 110  Q
    ||||||||||||||||||  || || ||||||||||||||||||||  | || |  ||||| |||||||||||| | || |||||| | || || |||||    
T  20591955 taggtggtggcaaagcaaaacggtcattccttcagcttatttggctattgtgcgtgtgggtcttatggaatgagcgcaataataggtttttcaaataatg 20591856  T
Q  111 gcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcaca 202  Q
      |||||||||||||  || ||| |||||||||| |||||| |||||||||| |||||||||| ||||| |||| | |||| ||||||||||    
T  20591855 ttgtaactcctatgcctagtttgctagataaagtgaaatatttgtctttagcctggatgaaatccaaaaaggctgcctttaagtttggcaca 20591764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 4923026 - 4922866
Alignment:
Q  39 ttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttag 137  Q
    ||||||||||| ||||||||| | |||| ||||||||||||||| ||  |||| || ||||| || |||||||  |||||| |||| | |||||||||||    
T  4923026 ttccttcagctgatttggcttttgtgtgtttgggttttatggaacgaacgtaataacaggctcttcaataatgttgtaacttctattcccaggttgttag 4922927  T
Q  138 ataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttgg 198  Q
    ||||||| |||| |||||| ||||| ||| |||||  |||||||| |  ||||||||||||    
T  4922926 ataaagttaaatttatgtccttagcatggttgaaagccaaaagggttgtttttaggtttgg 4922866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 6049012 - 6048856
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaaa-ataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | |||| ||||||||||||||||||  | ||  ||||| |||| |||||||  |||||| |||| | ||||||||||||||    
T  6049012 cttcagcttatttggctcttgtgtgtttgggttttatggaatgaacgcaatgataggatgttcaataatgtggtaacttctattc-caggttgttagata 6048914  T
Q  141 aagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttgg 198  Q
    || | ||||||||||||||||| ||| |||||  ||||| || |  ||||||||||||    
T  6048913 aaattaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttgg 6048856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 43 - 198
Target Start/End: Original strand, 20209071 - 20209227
Alignment:
Q  43 ttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagataa 141  Q
    ||||||| ||||||||| | |||| ||||||||||||||||||   ||| || || || || |||||||  || ||| |||| |||||||||||||||||    
T  20209071 ttcagctgatttggcttttgtgtgtttgggttttatggaatgaacctaataacagactcttcaataatgttgttacttctattctcaggttgttagataa 20209170  T
Q  142 agtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttgg 198  Q
    ||| |||| |||||||||||| ||| |||||  ||||| || |  ||||||||||||    
T  20209171 agttaaatttatgtctttagcatggttgaaagccaaaaaggttgtttttaggtttgg 20209227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 34874790 - 34874921
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||||||||||||||||||  |||| || | ||  || |||||||  |||||| |||| |||| |||||||||||    
T  34874790 cttcagcttatttggctcttgtgcgtttgggttttatggaatgaacgtaataacaagcctttcaataatgttgtaacttctattctcaagttgttagata 34874889  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  34874890 aagttaaatatatgtctttagcctggttgaaa 34874921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 4416051 - 4416182
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    ||||| |||||||||||  | || | ||||||||||||||| |   |||| || ||||| || |||||||  |||||| |||| | ||||||||||||||    
T  4416051 cttcaacttatttggctcttgtgcgtttgggttttatggaacgtacgtaataacaggcttttcaataatgttgtaacttctattcccaggttgttagata 4416150  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  4416151 aagttaaatatatgtctttagcctggttgaaa 4416182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 7001116 - 7001237
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    ||||| |||||||||||  | || | ||||||||||||||| ||  |||| || ||||| || |||||||  |||||| |||| | || ||||||||| |    
T  7001116 cttcaacttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacaggcttttcaataatgttgtaacttctattcccaagttgttagaga 7001215  T
Q  141 aagtaaaatatatgtctttagc 162  Q
    |||| |||||||||||||||||    
T  7001216 aagttaaatatatgtctttagc 7001237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 3727725 - 3727834
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    ||||||||||||||| |||| ||||| ||||| ||||||| |||  |||| |||||| | || |||||||   | ||||||||||| |||||| | || |    
T  3727725 cttcagcttatttggtttctttgtgcctgggtattatggactgaacgtaacaataggttattcaataatgctattactcctatgcttaggttgatggaca 3727824  T
Q  141 aagtaaaata 150  Q
    ||||||||||    
T  3727825 aagtaaaata 3727834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 22095604 - 22095640
Alignment:
Q  45 cagcttatttggcttctctgtgcttgggttttatgga 81  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  22095604 cagcttatttggcttctttgtgtttgggttttatgga 22095640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 18935485 - 18935245
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    |||||||||||||||||| ||  | ||||||||||||||||||||| | ||   ||||||||||||||||||| |||| || || || ||||||||||      
T  18935485 aggtggtggcaaagcaactcgcgccttccttcagcttatttggcttttgtgcatttgggttttatggaatgagcgtaataacagactctttaataatgtt 18935386  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaattaaatag 212  Q
    |||||| |||| | |||||||||||||||||| ||||||| ||||||||| ||| |||||  |||||  | |  |||||||||||| ||     | ||||    
T  18935385 gtaacttctattcccaggttgttagataaagttaaatataagtctttagcctggttgaaagccaaaaatgttgtttttaggtttggtac-----agatag 18935291  T
Q  213 gtggtgttcgagccctttacaatgtttaggcataacttaatggttt 258  Q
     |||||||| || || || |||||||| ||||| ||||||||||||    
T  18935290 ttggtgttcaagtccctttcaatgtttgggcatcacttaatggttt 18935245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 20395385 - 20395254
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||||||||||||||| ||  |||| |||||||| || |||||||  |||||| |||| | ||| ||||||||||    
T  20395385 cttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataataggcttttcaataatgttgtaacttctattcccagattgttagata 20395286  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  20395285 aagttaaatatatgtctttagcctggttgaaa 20395254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 10563660 - 10563791
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||| | |||| ||||||||||||||| ||  | || || ||||| || || ||||  |||||| |||| | ||||||||||||||    
T  10563660 cttcagcttatttggcttttgtgtgtttgggttttatggaacgaacgcaataacaggcttttcaaaaatgttgtaacttctattcccaggttgttagata 10563759  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| |||||| |||||||||| ||| |||||    
T  10563760 aagttaaatatttgtctttagcctggttgaaa 10563791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 53779834 - 53779703
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||| | |||| ||||||||||||||| ||  | || || ||||| || || ||||  |||||| |||| | ||||||||||||||    
T  53779834 cttcagcttatttggcttttgtgtgtttgggttttatggaacgaacgcaataacaggcttttcaaaaatgttgtaacttctattcccaggttgttagata 53779735  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| |||||| |||||||||| ||| |||||    
T  53779734 aagttaaatatttgtctttagcctggttgaaa 53779703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 12881037 - 12881167
Alignment:
Q  43 ttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagataa 141  Q
    ||||||||||||||||  | |  | ||||||||||||||| ||  |||| || ||||| || |||||||  |||||| |||| | |||||||||||||||    
T  12881037 ttcagcttatttggctcttgttcgtttgggttttatggaacgaacgtaataacaggcttttcaataatgttgtaacttctattcccaggttgttagataa 12881136  T
Q  142 agtaaaatatatgtctttagcttggatgaaa 172  Q
    ||| ||||||||||||||||| ||| |||||    
T  12881137 agttaaatatatgtctttagcctggttgaaa 12881167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 45 - 162
Target Start/End: Original strand, 53487307 - 53487425
Alignment:
Q  45 cagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagataaag 143  Q
    ||||||||||||||  | || | ||||||||||||||||||  |||| || ||||| || |||||||  || ||| |||| | |||||||||||||||||    
T  53487307 cagcttatttggctcttgtgcgtttgggttttatggaatgaacgtaataacaggcttttcaataatgttgttacttctattcccaggttgttagataaag 53487406  T
Q  144 taaaatatatgtctttagc 162  Q
    | |||||||||||||||||    
T  53487407 ttaaatatatgtctttagc 53487425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 42823161 - 42823102
Alignment:
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||||| |||| |||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  42823161 gtaacttctattctcaggttgttagataaagttaaatatatgtctttagcctggttgaaa 42823102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 30274164 - 30274294
Alignment:
Q  43 ttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagataa 141  Q
    ||||||||||||||||  | || | ||||||||||||||| ||  |||| || ||| | || |||||||  |||||| |||| | ||| |||||||||||    
T  30274164 ttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacaggtttttcaataatgttgtaacttctattcccagattgttagataa 30274263  T
Q  142 agtaaaatatatgtctttagcttggatgaaa 172  Q
    ||| ||||||||||||||||| ||| |||||    
T  30274264 agttaaatatatgtctttagcctggttgaaa 30274294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 34322670 - 34322790
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||||||||||||||| ||  |||| || || || || |||||||  |||||| |||| |  |||||||||||||    
T  34322670 cttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacagacttttcaataatgttgtaacttctattcctaggttgttagata 34322769  T
Q  141 aagtaaaatatatgtctttag 161  Q
    |||| ||||||||||||||||    
T  34322770 aagttaaatatatgtctttag 34322790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 42777976 - 42777896
Alignment:
Q  92 aataggctgtttaataatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||||||| || |||||||  |||||| |||| | |||||||||||| ||||| ||||||||||||||||| ||| |||||    
T  42777976 aataggcttttcaataatgttgtaacttctattcccaggttgttagacaaagtcaaatatatgtctttagcctggttgaaa 42777896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 18106907 - 18107038
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||| ||||||||||| ||  |||| || || || || |||||||  |||||| |||| | || |||||||||||    
T  18106907 cttcagcttatttggctattgtgcgtttgagttttatggaacgaacgtaacaacagacttttcaataatgttgtaacttctattcccaagttgttagata 18107006  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  18107007 aagttaaatatatgtctttagcctggttgaaa 18107038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 29554091 - 29554222
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    ||||| || ||||||||||| ||||| ||||| ||||||| |||  |||| |||||| |||| ||||||    | ||||||||||  |||||||| || |    
T  29554091 cttcaactcatttggcttctttgtgcctgggtattatggactgaacgtaataataggttgttcaataattctattactcctatgcctaggttgttggaca 29554190  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    ||||||||||  |||||||||||||| |||||    
T  29554191 aagtaaaatacttgtctttagcttggttgaaa 29554222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 31864055 - 31863924
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | |||||||||||| || ||  |||| || ||| | || |||||||  |||||| |||| | |||||| |||||||    
T  31864055 cttcagcttatttggctcgtatgcgtttgggttttatgaaacgaacgtaataacagggttttcaataatgttgtaacttctattcccaggttattagata 31863956  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  31863955 aagttaaatatatgtctttagcctggttgaaa 31863924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 198
Target Start/End: Complemental strand, 449786 - 449683
Alignment:
Q  95 aggctgtttaataatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggt 194  Q
    ||||| || |||||||  |||||| |||| | ||| |||||||||||||| |||||||| |||||||| ||| |||||  ||| | || || ||||||||    
T  449786 aggcttttcaataatgttgtaacttctattcccagtttgttagataaagttaaatatatatctttagcctggttgaaagccaataaggttatttttaggt 449687  T
Q  195 ttgg 198  Q
    ||||    
T  449686 ttgg 449683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 29213404 - 29213453
Alignment:
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagc 162  Q
    |||||| |||| | |||||||||||||||||| |||||| ||||||||||    
T  29213404 gtaacttctattcccaggttgttagataaagttaaatatttgtctttagc 29213453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 19644777 - 19644741
Alignment:
Q  45 cagcttatttggcttctctgtgcttgggttttatgga 81  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  19644777 cagcttatttggcttctttgtgcctgggttttatgga 19644741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 7397028 - 7397263
Alignment:
Q  7 attcaataggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaa 105  Q
    |||||| ||||||||||||||||| | | |  ||| ||||||| |||||||| || |||| |||||| ||||||||||||||||| |||||| |||||||    
T  7397028 attcaacaggtggtggcaaagcaaagaggttattctttcagctcatttggctcctttgtgtttgggtcttatggaatgagtgtaataatagggtgtttaa 7397127  T
Q  106 taatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaat 205  Q
    |||||  ||||||||||| | ||||||||| |||||||| || ||| ||||  || | ||| |||||| ||||| |||||| ||||  ||||||||        
T  7397128 taatgttgtaactcctattcccaggttgttggataaagtgaattatgtgtccctaacatggttgaaatccaaaaaggctacgtttatatttggcac---- 7397223  T
Q  206 taaataggtggtgttcgagccctttacaatgtttaggcataa 247  Q
       ||||||||||||||| ||| ||||||||||| |||||||    
T  7397224 -ggataggtggtgttcgaaccc-ttacaatgtttgggcataa 7397263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 21335545 - 21335734
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    ||||||||||||||| |  || || ||||||||||||||||||||  | |||| ||| || |||||||||||| | || |||||||| || |||||||      
T  21335545 aggtggtggcaaagcgaaacggtcattccttcagcttatttggctattgtgtgtttgagtcttatggaatgagcgcaagaataggcttttcaataatgtg 21335644  T
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcaca 202  Q
    ||||||| ||| | ||||||| |||||||| | ||||||||||||||||| ||| ||||| |||||| || | | |||| ||||||||||    
T  21335645 gtaactcttattcccaggttgctagataaactgaaatatatgtctttagcctggttgaaaggcaaaaaggatgcctttatgtttggcaca 21335734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 28098284 - 28098453
Alignment:
Q  14 aggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggc 112  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||  | || |  ||| | |||||||||||| | || |||||||| |  |||||||      
T  28098284 aggtggtggcaaagcaaagcggtcattccttcagcttatttggctattgtgcgtgtggatcttatggaatgagcgcaataataggctttccaataatgtt 28098383  T
Q  113 gtaa---ctcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaa 179  Q
    ||||   |||||||||  |||||| |||||||||| |||||| |||||||||| |||||||||| |||||    
T  28098384 gtaactcctcctatgcctaggttgctagataaagtgaaatatttgtctttagcctggatgaaatccaaaa 28098453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 26720491 - 26720357
Alignment:
Q  39 ttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttag 137  Q
    ||||||||||| ||||||||| | |||| ||||||||||||||||||  |||| || || || || |||||||  || ||| |||| | |||||||||||    
T  26720491 ttccttcagctgatttggcttttgtgtgtttgggttttatggaatgaacgtaataacagactcttcaataatgttgttacttctattcccaggttgttag 26720392  T
Q  138 ataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    ||||||| |||| |||||||||||| ||| |||||    
T  26720391 ataaagttaaatttatgtctttagcatggttgaaa 26720357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 41181999 - 41181842
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||||||||||||||| ||  |||| || || || || |||||||  |||||| |||| | ||||||||||||||    
T  41181999 cttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacagacttttcaataatgttgtaacttctattcccaggttgttagata 41181900  T
Q  141 aagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttgg 198  Q
    |||| ||||||||||||||||| ||| |||||  ||||| || |  ||||||||||||    
T  41181899 aagttaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttgg 41181842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 39 - 172
Target Start/End: Original strand, 41061492 - 41061626
Alignment:
Q  39 ttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttag 137  Q
    ||||||||||| ||||| ||| | |||| ||||||||||||||||||  |||| || || || || |||||||  || ||| |||| |||||||||||||    
T  41061492 ttccttcagctgatttgacttttgtgtgtttgggttttatggaatgaacgtaataacagactcttcaataatgttgttacttctattctcaggttgttag 41061591  T
Q  138 ataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    ||||||| |||| ||||||||| || ||| |||||    
T  41061592 ataaagttaaatttatgtcttttgcatggttgaaa 41061626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 12174021 - 12173836
Alignment:
Q  18 ggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaa 116  Q
    ||||||| |||||  || || |||||||| |||||||||||  | || | |||| | |||||||||||| | || |||||| | || |||||||  ||||    
T  12174021 ggtggcagagcaaaacggtcattccttcaacttatttggctattgtgcgtttggatcttatggaatgagcgcaataataggtttttcaataatgttgtaa 12173922  T
Q  117 ctcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcaca 202  Q
      ||||| | |||||||||||||||||| ||||||||||||||||| | |||||||  ||| | || | | |||||||||||||||    
T  12173921 gccctattcccaggttgttagataaagtgaaatatatgtctttagcctagatgaaagccaagaaggttgcctttaggtttggcaca 12173836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 49969116 - 49968985
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | |||| ||| ||||||||||| ||  |||| || || || ||||||||||  |||||| |||| | ||  ||||||||||    
T  49969116 cttcagcttatttggctcttgtgtgtttgagttttatggaacgaacgtaataacagactttttaataatgttgtaacttctattcccaacttgttagata 49969017  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  49969016 aagttaaatatatgtctttagcctggttgaaa 49968985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 30111347 - 30111432
Alignment:
Q  113 gtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttgg 198  Q
    |||||| |||| | |||||||||||||||||| ||||||||||||||||| ||| |||||  ||||| || |  ||||||||||||    
T  30111347 gtaacttctatccccaggttgttagataaagttaaatatatgtctttagcctggttgaaagccaaaaaggttgtttttaggtttgg 30111432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 17707785 - 17707654
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||||||||||||||| ||  |||| || || || || |||||||  |||||| ||||    |||||||||||||    
T  17707785 cttcagcttatttggctcttgtgcgtttgggttttatggaacgaacgtaataacagacttttcaataatgttgtaacttctatttctaggttgttagata 17707686  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  17707685 aagttaaatatatgtctttagcctggttgaaa 17707654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 25591825 - 25591956
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||| ||||||||||| ||  |||| || ||| | || |||||||  |||||| |||| ||||||||| ||||||    
T  25591825 cttcagcttatttggctcgtatgcgtttgagttttatggaacgaacgtaataacagggttttcaataatgttgtaacttctattctcaggttgctagata 25591924  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| |||||||| |||||||| ||| |||||    
T  25591925 aagttaaatatatatctttagcctggttgaaa 25591956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 43810599 - 43810468
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||| ||| ||||||||||| ||||| ||||| ||||||| |||  |||| |||||| |||| ||||||    | ||||||||||  |||||||| ||||    
T  43810599 cttcggctcatttggcttctttgtgcctgggtgttatggactgaacgtaataataggttgttcaataattctattactcctatgcctaggttgttggata 43810500  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    ||||||||||  ||||||||| |||| |||||    
T  43810499 aagtaaaatacttgtctttaggttggttgaaa 43810468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 47107031 - 47107162
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaaa-ataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | |||| ||||||||||||||| ||  | ||  | |||||||| |||||||  ||| || |||| | ||||||||| ||||    
T  47107031 cttcagcttatttggctcttgtgtgtttgggttttatggaacgaacgcaatgacaggctgttcaataatgtggtatcttctattcccaggttgtttgata 47107130  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    || | ||||||||||||||||| ||| |||||    
T  47107131 aaattaaatatatgtctttagcctggctgaaa 47107162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 9903679 - 9903747
Alignment:
Q  104 aataatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||||||  |||||| |||| | || ||||||||||||||| ||||||||||||||||| ||| |||||    
T  9903679 aataatgttgtaacttctattcccaagttgttagataaagttaaatatatgtctttagcctggttgaaa 9903747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 10711551 - 10711595
Alignment:
Q  128 aggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||||||||||||| || ||||||||||||||||| ||| |||||    
T  10711551 aggttgttagataaggttaaatatatgtctttagcctggttgaaa 10711595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 7320 - 7186
Alignment:
Q  39 ttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttag 137  Q
    ||||||||||| ||||||||| | |||| ||||||||||||||||||  |||| || || || || |||||||  || ||| |||| | |||||||||||    
T  7320 ttccttcagctgatttggcttttgtgtgtttgggttttatggaatgaacgtaataacagactcttcaataatgttgttacttctattcccaggttgttag 7221  T
Q  138 ataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    ||||||| |||| |||||||||||| ||| |||||    
T  7220 ataaagttaaatttatgtctttagcatggttgaaa 7186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 11026838 - 11026725
Alignment:
Q  92 aataggctgtttaataatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctactttta 191  Q
    |||||||| || |||||||  |||||||||||||  | |||| |||||||||| |||||| |||||||||  |||||||||| ||||| |||| | ||||    
T  11026838 aataggcttttcaataatgttgtaactcctatgcctaagttgatagataaagttaaatatttgtctttagtctggatgaaatccaaaaaggctgccttta 11026739  T
Q  192 ggtttggcacaaat 205  Q
     |||||||||||||    
T  11026738 agtttggcacaaat 11026725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 7075838 - 7075770
Alignment:
Q  104 aataatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||||||  |||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  7075838 aataatgttgtaacttctatgctcaggttgttagataaagttaaatatatgtctttagcctggttgaaa 7075770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 258
Target Start/End: Complemental strand, 30273710 - 30273577
Alignment:
Q  120 ctatgctcaggttgttagataaagtaaaatatatgtctttagcttggatgaaatgcaaaagggctacttttaggtttggcacaaattaaataggtggtgt 219  Q
    |||| |||||||||||||||||||| |||| |||||||||||| ||| |||||  ||||| || |  |||||||||||| ||     | ||||||||||     
T  30273710 ctattctcaggttgttagataaagttaaatgtatgtctttagcatggttgaaagacaaaaaggttgtttttaggtttggtac-----agataggtggtgc 30273616  T
Q  220 tcgagccctttacaatgtttaggcataacttaatggttt 258  Q
    || || ||||| ||||||||||||||   ||||||||||    
T  30273615 tcaagtcctttccaatgtttaggcatcgtttaatggttt 30273577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 1379871 - 1379740
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||| | || | ||||||  ||||||| ||   ||| |||||| | || |||||||  |||||| |||| | |||| ||||||| |    
T  1379871 cttcagcttatttggcttttgtgcgtttgggtggtatggaacgaacataataataggtttttcaataatgttgtaacttctattcccaggctgttagaca 1379772  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||||||| |||||    
T  1379771 aagttaaatatatgtctttagcttggttgaaa 1379740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 3000099 - 3000230
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||| ||||||||||| ||  |||| || || || || |||||||  |||||| |||| | || |||||||||||    
T  3000099 cttcagcttatttggctattgtgcgtttgagttttatggaacgaacgtaacaacagacttttcaataatgttgtaacttctattcccaagttgttagata 3000198  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  3000199 aagttaaatatatgtctttagcctggttgaaa 3000230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 161
Target Start/End: Complemental strand, 38182578 - 38182422
Alignment:
Q  6 cattcaataggtggtggcaaagcaacgcgatcgttccttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgttta 104  Q
    ||||||| ||||||||| ||||  | | | || ||||||||||| ||||| ||||| ||||  ||||||||||||| || |||||| ||||   ||||||    
T  38182578 cattcaagaggtggtggtaaagttaggaggtctttccttcagctcatttgccttctttgtgtctgggttttatggactgggtgtaacaataaattgttta 38182479  T
Q  105 ataatggcgtaactcctatgctcaggttgttagataaagtaaaatatatgtctttag 161  Q
    |||||   ||||||| ||| |   ||||||| ||||||||||||||| || ||||||    
T  38182478 ataattttgtaactcatattcctgggttgttggataaagtaaaatatttgactttag 38182422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 181918 - 181787
Alignment:
Q  42 cttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagata 140  Q
    |||||||||||||||||  | || | ||||||||||||||| ||  |||| || ||| | || |||||||  |||||| |||| | ||||||||||||||    
T  181918 cttcagcttatttggctcgtatgcgtttgggttttatggaacgaacgtaataacagggttttcaataatgttgtaacttctattcccaggttgttagata 181819  T
Q  141 aagtaaaatatatgtctttagcttggatgaaa 172  Q
    |||| ||||||||||||||||| ||| |||||    
T  181818 aagttaaatatatgtctttagcctggttgaaa 181787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 11866 - 11736
Alignment:
Q  43 ttcagcttatttggcttctctgtgcttgggttttatggaatgagtgtaa-aataggctgtttaataatggcgtaactcctatgctcaggttgttagataa 141  Q
    |||||||||||| |||  | || | ||||||||||||||| ||  |||| || | ||| || |||||||  ||||||  ||| |||||||||||||||||    
T  11866 ttcagcttatttagctcttgtgcgtttgggttttatggaacgaacgtaataacatgcttttcaataatgttgtaacttttattctcaggttgttagataa 11767  T
Q  142 agtaaaatatatgtctttagcttggatgaaa 172  Q
    ||| ||||||||||||||||| ||| |||||    
T  11766 agttaaatatatgtctttagcctggttgaaa 11736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 10695 - 10659
Alignment:
Q  45 cagcttatttggcttctctgtgcttgggttttatgga 81  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  10695 cagcttatttggcttctttgtgcctgggttttatgga 10659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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