View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405-Insertion-16 (Length: 549)
Name: NF4405-Insertion-16
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-16 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 549
Target Start/End: Original strand, 45768601 - 45769142
Alignment:
| Q |
8 |
catttgacatagaattcacattattctcatttttattcaactgtggcttccaagtatctacttcgagaatcttatcacttttatgttcatcagggtgtct |
107 |
Q |
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| T |
45768601 |
catttgacatagaattcacattattctcatttttattcaactgtggcttccaagtatctacttcgagaatcttatcacttttatgttcatcagggtgtct |
45768700 |
T |
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| Q |
108 |
attcttcgatgatgcgttttttgtttggctaacggagttctcttgcatccaatggtctaaccaattggagccaaaccgtggtttctccgactcaatcttc |
207 |
Q |
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| T |
45768701 |
attcttcgatgatgcgttttttgtttggctaatggagttctcttgcatccaatggtctaaccaattggagccaaaccgtggtttctccgactcaatcttc |
45768800 |
T |
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| Q |
208 |
ctaaaatttgaattggaactgcatctctacaagtttagccacaaacacataggttaagtcgatctctcgacaaatgcaagagtaataagattagttaata |
307 |
Q |
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| T |
45768801 |
ctaaaatttgaattggaactgcacctctgcaagtttagccacaaacacataggttaagtcgatctctcgacaaatgcaagagtaataagaatagttaata |
45768900 |
T |
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| Q |
308 |
ttattcaataagttatgcatgcattaggaaaacaattaaatttcttaattgaagtgtaaaaatctttctaagcattgtttattcttcaaatagatattca |
407 |
Q |
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| T |
45768901 |
ttattcaataagttatgcatgcattaggaaaacaattaaatttcttaattcaagtgtaaaaatctttctaaccattgtttattcttcaaatagatattca |
45769000 |
T |
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| Q |
408 |
ccatcaaagtgataagaattcctagataaatttcaagatgtttgcatcataatttgaagtaattaattgggaagaatagtactgtaccttgaggatggaa |
507 |
Q |
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| T |
45769001 |
ccatcaaagtgataagaattcctagacaaatttcaagatgtttgcatcataatttgaagtaattaattgggaagaatagtactgtaccttgaggatggaa |
45769100 |
T |
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| Q |
508 |
gatccaccgaattttgtactatagacatgatgtggttgctca |
549 |
Q |
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| T |
45769101 |
gatccaccgaattttgtactatagacatgatgtggttgctca |
45769142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 348
Target Start/End: Complemental strand, 37864847 - 37864816
Alignment:
| Q |
317 |
aagttatgcatgcattaggaaaacaattaaat |
348 |
Q |
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| T |
37864847 |
aagttatgcatgcattaggaaaacaattaaat |
37864816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 492 - 549
Target Start/End: Original strand, 40432 - 40489
Alignment:
| Q |
492 |
taccttgaggatggaagatccaccgaattttgtactatagacatgatgtggttgctca |
549 |
Q |
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| T |
40432 |
taccttgaggatggaagatccatcaaatttcgtactatagacacgaagtgggtgctca |
40489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 347
Target Start/End: Complemental strand, 9435737 - 9435679
Alignment:
| Q |
289 |
gtaataagattagttaatattattcaataagttatgcatgcattaggaaaacaattaaa |
347 |
Q |
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| T |
9435737 |
gtaataggaataattaatattattctatatgataggcatgcattaggaaaacaattaaa |
9435679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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