View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405-Insertion-17 (Length: 507)
Name: NF4405-Insertion-17
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-17 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 11 - 465
Target Start/End: Original strand, 38005920 - 38006375
Alignment:
| Q |
11 |
gagatcaccgacattggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttgg |
110 |
Q |
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| T |
38005920 |
gagatcaccgacattggattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttgg |
38006019 |
T |
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| Q |
111 |
ttgtagattttgagttcgttgaggatagagagaggggtggttgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattggagtgcagact |
210 |
Q |
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| T |
38006020 |
ttgtagattttgagttcgttgaggatagagagaggggtggttgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattggagtgcaaatt |
38006119 |
T |
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| Q |
211 |
ggattttatctgaggagtttggggtgaaggtgacggctgaggtggtgggtgtggtggcggtggcttcgtcgtcggacattgtgtggaagagagggtggtg |
310 |
Q |
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| T |
38006120 |
ggattttatctgaggagtttggggtgaaggtgacggctgaggtggtgggtgtggtggcggtggcttcgtcgtcggacattgtgtggaagagagggtggtg |
38006219 |
T |
|
| Q |
311 |
tgtttgtgaaatgagagagacaacgttgtaacgaatgagtttgtgttgttttgtgtaatggtggtaatgaataatgagagagaaactctaggttatggaa |
410 |
Q |
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| T |
38006220 |
tgtttgtgaaatgagagagacaacgttgtaacgaatgagtttgtgttgttttgtgtaatggtggtaatgaataatgagagagaaggcgtaggttatggag |
38006319 |
T |
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| Q |
411 |
gaaaattaggatcttagttgtgttttgattcc-ttaatcatctctaaaagaataag |
465 |
Q |
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| T |
38006320 |
gaaaattaggatcttagttgtgttttgattccattaatcgtctctaaaagaataag |
38006375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 27 - 439
Target Start/End: Complemental strand, 26461877 - 26461477
Alignment:
| Q |
27 |
gattggaaagtgtcatagagccaacgacaaagattgttgtcgccagcaccggagctgggttggcggaggagggtggcgatttggttgtagattttgagtt |
126 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
26461877 |
gattggaaagtgtcgtagagccaacgacaaagattgttgtcaccggcgccggagttgggttggcggaggagggtggcgatttggttgtagatttcgggtt |
26461778 |
T |
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| Q |
127 |
cgttgaggatagagagaggggtggttgatgatgtaatggagagtgttgggttgacgatggtgcaaagggattggagtgcagactggattttatctgagga |
226 |
Q |
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| T |
26461777 |
cgttgaggatagagagaggggtggttgatgaggtaatggagagtgttggattgacgatggtgcaaagggattggagagcggattggattttatctaaggt |
26461678 |
T |
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| Q |
227 |
gtttggggtgaaggtgacggctgaggtggtgggtgtggtggcggtggcttcgtcgtcggacattgtgtggaagagagggtggtgtgtttgtgaaatgaga |
326 |
Q |
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||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||| |
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| T |
26461677 |
gtttggggtgaaggtgacggcggaggtagtggttgtggtggcggtggcttcgtcgtcagacattgt------------gtgatgtgtttgagaaatgaga |
26461590 |
T |
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| Q |
327 |
gagacaacgttgtaacgaatgagtttgtgttgttttgt--gtaatggtggtaatgaataatgagagagaaactctaggttatggaagaaaattaggatct |
424 |
Q |
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||| ||||||||||||| || || |||||||||||||| | |||||||||||||||||||||||||| || |||||||| ||||||||||||| |
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| T |
26461589 |
gaggcaacgttgtaacg-atcag-ttgtgttgttttgtcaatggtggtggtaatgaataatgagagagaaggcgtaagttatggagcaaaattaggatct |
26461492 |
T |
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| Q |
425 |
tagttgtgttttgat |
439 |
Q |
| |
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|| |||||||||||| |
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| T |
26461491 |
taattgtgttttgat |
26461477 |
T |
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