View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405-Insertion-18 (Length: 506)
Name: NF4405-Insertion-18
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-18 |
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Alignment Details
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 35925401 - 35925285
Alignment:
| Q |
122 |
ttactctctttttaacactacccattaaaatttatgtaaattcttccattttgaatacaagtctcacaagaatttcagttgatagtaaagaatttaaaat |
221 |
Q |
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| T |
35925401 |
ttactctctttttaactctactcattgaaatttatgcaaattcttctattttgaatacaagtctcacaagaatttcagtcaatagtaaagaattcaaaat |
35925302 |
T |
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| Q |
222 |
aaagattgctaacagca |
238 |
Q |
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| T |
35925301 |
aaagattgttaatagca |
35925285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 124 - 484
Target Start/End: Complemental strand, 35919679 - 35919320
Alignment:
| Q |
124 |
actctctttttaacactacccattaaaatttatgtaaattcttccattttgaatacaagtctcacaagaatttcagttgatagtaaagaatttaaaataa |
223 |
Q |
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| T |
35919679 |
actctctttttaacactactgattgtaatttatataagttctgccattcggaatataagtctcacatgaatttcagttgctagtaaagaaattaaagcaa |
35919580 |
T |
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| Q |
224 |
agattgctaac----agcactactccattccataaattaaatatgatttgcttacttcaacagggctggctgctttgagggaattcactcgagcatatcc |
319 |
Q |
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| T |
35919579 |
aaattgttaattaatatcactaatc-attccataaacta----tgatttgcttaccttaacaggtccggctgctttgagggaattcacaacagtacttcc |
35919485 |
T |
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| Q |
320 |
ataaagaatttcctcaccatcggtcaacataacggaacacgctgcctttgcacaacagagacgaccatcatcatcaacgagacattttacagataaagaa |
419 |
Q |
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| T |
35919484 |
gaaagtaattcccttattatcggtcaatataactccacatcttgcctttgcacgacaatgacgaccatcatcatcaacgagacagattacagctaaagta |
35919385 |
T |
|
| Q |
420 |
attatgcgaaattctccctgcatgcatgcacgcgctcacattataggataccagagaaaaattaa |
484 |
Q |
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| T |
35919384 |
attatctgaaattttacctgcaagcaaacacgcgcacaaattataagatataagagaaaaattaa |
35919320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 35925486 - 35925417
Alignment:
| Q |
8 |
ttagcgacatctgtcgtgaaagttgatgcaataatctgatgaaccagaagataaatattgttaattcaaa |
77 |
Q |
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| T |
35925486 |
ttagcgacgtctgtcgtgaaagttgatgcaataatctgattaaccagaaggtaaagattgctaattcaaa |
35925417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 16231135 - 16231209
Alignment:
| Q |
168 |
cattttgaatacaa-gtctcacaagaatttcagttgatagtaaagaatttaaaataaagattgctaacagcacta |
241 |
Q |
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||||||||||| || |||||||| |||||||| | | ||||||||||||||| ||||||||| ||| ||||||| |
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| T |
16231135 |
cattttgaatataaagtctcacatgaatttcaatcaacagtaaagaatttaaattaaagattgttaatagcacta |
16231209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 34688878 - 34688952
Alignment:
| Q |
168 |
cattttgaatacaa-gtctcacaagaatttcagttgatagtaaagaatttaaaataaagattgctaacagcacta |
241 |
Q |
| |
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||||||||||| || | |||||| |||||||||| ||||||||||||||||| ||| ||||| ||| ||||||| |
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| T |
34688878 |
cattttgaatataaagactcacatgaatttcagtcaatagtaaagaatttaaagtaacgattgttaatagcacta |
34688952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 34711290 - 34711364
Alignment:
| Q |
168 |
cattttgaatacaa-gtctcacaagaatttcagttgatagtaaagaatttaaaataaagattgctaacagcacta |
241 |
Q |
| |
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||||||||||| || | |||||| |||||||||| ||||||||||||||||| ||| ||||| ||| ||||||| |
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| T |
34711290 |
cattttgaatataaagactcacatgaatttcagtcaatagtaaagaatttaaagtaacgattgttaatagcacta |
34711364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 35556291 - 35556332
Alignment:
| Q |
35 |
gcaataatctgatgaaccagaagataaatattgttaattcaa |
76 |
Q |
| |
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|||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
35556291 |
gcaacaatctgattaaccagaagataaagattgttaattcaa |
35556332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 35919759 - 35919719
Alignment:
| Q |
35 |
gcaataatctgatgaaccagaagataaatattgttaattca |
75 |
Q |
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| T |
35919759 |
gcaataatctgattaaccagaagataaagattgtcaattca |
35919719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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