View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405-Insertion-20 (Length: 288)
Name: NF4405-Insertion-20
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-20 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 6 - 288
Target Start/End: Complemental strand, 49350457 - 49350175
Alignment:
| Q |
6 |
catttacaaaatcaacccaacatccttcatgaaccataaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaa |
105 |
Q |
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| T |
49350457 |
catttacaaaatcaacccaacatccttcatgaaccataaaggatgcagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaa |
49350358 |
T |
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| Q |
106 |
ttcactcatctttagttcaatcagatacttgtgtgttttaaccttggaggaagtattctacctatgctattccttgaaatgcctcaagattaatggtgat |
205 |
Q |
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| T |
49350357 |
ttcactcatctttagttcaatcagatacttgtgtgttttaacattggaggaagtattctacctatgctattccttgaaatgcctcaagattaatggtgat |
49350258 |
T |
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| Q |
206 |
gttgatactggtcccttaaatgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctga |
288 |
Q |
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| T |
49350257 |
gttgatactggtcccttaaatgaagaagagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctga |
49350175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 171 - 281
Target Start/End: Complemental strand, 250599 - 250489
Alignment:
| Q |
171 |
gctattccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaagaagagttgtggcgtaacttcaagtccaagaaagatgcact |
270 |
Q |
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| T |
250599 |
gctattccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaagaagagttgtggcgtaacttcaagtccaagaaagatgcact |
250500 |
T |
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| Q |
271 |
cccttaaattt |
281 |
Q |
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| T |
250499 |
cccttaaattt |
250489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 13457934 - 13458049
Alignment:
| Q |
160 |
attctacctatgctattccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaagaagagttgtggcgtaacttcaagtccaag |
259 |
Q |
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| T |
13457934 |
attctacctatgctattccctgaaatgcatcaagattaatggtgatgctgataccggtcccttaaatgatgaagagttatggtgttacttcaagtctaag |
13458033 |
T |
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| Q |
260 |
aaagatgcactccctt |
275 |
Q |
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| T |
13458034 |
aaagatgcattccctt |
13458049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 6907 - 6786
Alignment:
| Q |
143 |
ttaaccttggaggaagtattctacctatgctattccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaagaagagttgtggc |
242 |
Q |
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|||||| ||||||||| |||||| ||| | ||||| |||||||||||||||||||||| | || ||||||||||||||||||||| |||||||||||| |
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| T |
6907 |
ttaaccgtggaggaagcattctatctaagttattcattgaaatgcctcaagattaatgacggtgctgatactggtcccttaaatgatgaagagttgtggt |
6808 |
T |
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| Q |
243 |
gtaacttcaagtccaagaaaga |
264 |
Q |
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| T |
6807 |
gttgcttcaagtccaagaaaga |
6786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 36663614 - 36663487
Alignment:
| Q |
143 |
ttaaccttggaggaagtattctacctatgctattccttgaaatgcctcaagattaa------tggtgatgttgatactggtcccttaaatgaagaagagt |
236 |
Q |
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|||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||| || || || |||||| |||||||||||||| ||||||| |
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| T |
36663614 |
ttaaccgtggaggaagcattctatctatgttattccttgaaatgcctcaagattaagattaatgttggtgctgataccggtcccttaaatgatgaagagt |
36663515 |
T |
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| Q |
237 |
tgtggcgtaacttcaagtccaagaaaga |
264 |
Q |
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| T |
36663514 |
tgtggcattacttcaggtccaagaaaga |
36663487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 36663822 - 36663734
Alignment:
| Q |
43 |
aaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtg |
138 |
Q |
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| T |
36663822 |
aaaggaagcagaagctgaggcacttaaagaacccatgt-------caaagattatatcacaacttcagtcttctttagttcaatcaaatacttgtg |
36663734 |
T |
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