View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405-Insertion-21 (Length: 243)
Name: NF4405-Insertion-21
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-21 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 45729786 - 45730021
Alignment:
| Q |
8 |
taaacaacccgtcacttattcttttgttatggaatttcagttcgttacgtgcatgtttgccactctcttctgtgccataggcatgattgcaaacaatgac |
107 |
Q |
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| T |
45729786 |
taaacaacccgtcacttattcttttgttatggaatttcagttcgttacgtgcatgtttgccactctcttctgtgccataggcatgattgcaaacaatgac |
45729885 |
T |
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| Q |
108 |
tttaaggtaagattgtgttaattaaggtagtgtttttgataaacaaattacttactttgtagtttgtagcttatagtttgagttacttttataaaaagtt |
207 |
Q |
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| T |
45729886 |
tttaaggtaagattgtgttaattaaggtagtgtttttgataaacaaattacttactttgcagtttatagcttatagtttgagttacttttataaaaagtt |
45729985 |
T |
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| Q |
208 |
gttgttttcgtacaagttttaagctattttcatata |
243 |
Q |
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| T |
45729986 |
gttgttttcgtacaagttttaagctattttcatata |
45730021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 45725597 - 45725710
Alignment:
| Q |
8 |
taaacaacccgtcacttattcttttgttatggaatttcagttcgttacgtgcatgtttgccactctcttctgtgccataggcatgattgcaaacaatgac |
107 |
Q |
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| T |
45725597 |
taaacaacccatcacttattctcttgttatggaatttcagttcgttatgtgcatgtttgccactatcttctgtaccataggcatgattataaacaatgac |
45725696 |
T |
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| Q |
108 |
tttaaggtaagatt |
121 |
Q |
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| T |
45725697 |
tttaaggtaagatt |
45725710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 45725723 - 45725768
Alignment:
| Q |
158 |
cttactttgtagtttgtagcttatagtttgagttacttttataaaa |
203 |
Q |
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| T |
45725723 |
cttattttgcagtttatagcttatagtttgcgttacttttataaaa |
45725768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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