View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405-Insertion-22 (Length: 231)
Name: NF4405-Insertion-22
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-22 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 44789406 - 44789549
Alignment:
| Q |
9 |
agagaaggtaggatacgaacgagtgaacgtgagggtatgctcatt-gagaagaggacacaaccaggcttaatgagatccaatcgtgggccacgcaagatt |
107 |
Q |
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| T |
44789406 |
agagtaggtaggatacgaacgagtaaacgtgagggtatgctcatttgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagatt |
44789505 |
T |
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| Q |
108 |
agatctaagacaaactctttagtaaatttaactactagctttga |
151 |
Q |
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| T |
44789506 |
agatctaagacaaactcttgagtaaatttatctattagctttga |
44789549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 44792961 - 44793056
Alignment:
| Q |
16 |
gtaggatacgaacgagtgaacgtgagggtatgctcattgagaagaggacacaaccaggcttaatgagatccaatcgtgggccacgcaagattagat |
111 |
Q |
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| T |
44792961 |
gtaggatacgaacgagtaaacgtggaggtatgttcattgagaagacgacacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagat |
44793056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 44797855 - 44797944
Alignment:
| Q |
22 |
tacgaacgagtgaacgtgagggtatgctcattgagaagaggacacaaccaggcttaatgagatccaatcgtgggccacgcaagattagat |
111 |
Q |
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| T |
44797855 |
tacgaacgagtaaacgtgggggtatgttcattgagaagacgacacgaccaggttcaatgagatccaatcgcagggcgcgcaagattagat |
44797944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 44801250 - 44801334
Alignment:
| Q |
22 |
tacgaacgagtgaacgtgagggtatgctcattgagaagaggacacaaccaggcttaatgagatccaatcgtgggccacgcaagat |
106 |
Q |
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| T |
44801250 |
tacgaacgagtaaacgtggaggtatgttcattgagaaaacgacatggccaggctcaatgagatccaatcgtaggccacgcaagat |
44801334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 44805742 - 44805831
Alignment:
| Q |
22 |
tacgaacgagtgaacgtgagggtatgctcattgagaagaggacacaaccaggcttaatgagatccaatcgtgggccacgcaagattagat |
111 |
Q |
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| T |
44805742 |
tacgaacgagtaaacgtgggggtatgttcattgtgaaaatgacacggccaggctcaatgacatcgaagcgtaggccacgcaagattagat |
44805831 |
T |
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