View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405-Insertion-26 (Length: 128)

Name: NF4405-Insertion-26
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405-Insertion-26
NF4405-Insertion-26
[»] chr8 (3 HSPs)
chr8 (8-128)||(37276970-37277090)
chr8 (8-128)||(37261235-37261349)
chr8 (8-128)||(37265008-37265122)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 3e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 37277090 - 37276970
Alignment:
Q  8 ggcactaggtgcgggtgcaatattatcgaaggtacctgcaggcacgggtcctccaattggtcccgccacaatattgatgccgtttgctgatggaggatcc 107  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37277090 ggcactaggtgcgggtgcaatattatcaaaggtacctgcatgcacgggtcctccaattggtcccgccacaatattgatgccgtttgctgaaggaggatcc 37276991  T
Q  108 ccctttctagttccaacaaga 128  Q
    |||||||||||||||||||||    
T  37276990 ccctttctagttccaacaaga 37276970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 37261349 - 37261235
Alignment:
Q  8 ggcactaggtgcgggtgcaatattatcgaaggtacctgcaggcacgggtcctccaattggtcccgccacaatattgatgccgtttgctgatggaggatcc 107  Q
    |||| |||||||||| ||| || ||||||||| ||| | |||||||||||| ||||| |||||||||||||||      |||  |||||| |||||||||    
T  37261349 ggcattaggtgcgggcgcagtactatcgaaggcaccaggaggcacgggtccaccaatgggtcccgccacaata------ccgcctgctgaaggaggatcc 37261256  T
Q  108 ccctttctagttccaacaaga 128  Q
    ||  |||||||||||||||||    
T  37261255 ccgcttctagttccaacaaga 37261235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 37265122 - 37265008
Alignment:
Q  8 ggcactaggtgcgggtgcaatattatcgaaggtacctgcaggcacgggtcctccaattggtcccgccacaatattgatgccgtttgctgatggaggatcc 107  Q
    |||| |||||||||| ||| ||  |||||||| ||| | |||||||||||| ||||| |||||||||||||||      ||   |||||| |||||||||    
T  37265122 ggcattaggtgcgggcgcagtaccatcgaaggcacccggaggcacgggtccaccaatgggtcccgccacaata------ccacctgctgaaggaggatcc 37265029  T
Q  108 ccctttctagttccaacaaga 128  Q
    ||  |||||||||||||||||    
T  37265028 ccacttctagttccaacaaga 37265008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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