View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405-Insertion-27 (Length: 121)

Name: NF4405-Insertion-27
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405-Insertion-27
NF4405-Insertion-27
[»] chr3 (5 HSPs)
chr3 (8-117)||(4179205-4179314)
chr3 (8-116)||(4172878-4172986)
chr3 (13-103)||(46589891-46589981)
chr3 (9-96)||(30694681-30694768)
chr3 (8-114)||(45731497-45731603)
[»] chr7 (3 HSPs)
chr7 (8-116)||(48260722-48260830)
chr7 (19-106)||(37381515-37381602)
chr7 (5-103)||(42694751-42694849)
[»] chr2 (2 HSPs)
chr2 (8-104)||(9795533-9795629)
chr2 (8-103)||(35917847-35917942)
[»] chr6 (2 HSPs)
chr6 (11-121)||(15107718-15107828)
chr6 (19-115)||(19403289-19403385)
[»] chr1 (1 HSPs)
chr1 (12-113)||(27024287-27024388)
[»] scaffold1619 (1 HSPs)
scaffold1619 (11-115)||(677-781)
[»] chr5 (1 HSPs)
chr5 (11-106)||(11140960-11141055)
[»] chr4 (2 HSPs)
chr4 (11-106)||(54421009-54421104)
chr4 (8-103)||(8192086-8192181)
[»] scaffold0105 (1 HSPs)
scaffold0105 (8-103)||(18661-18756)
[»] scaffold0740 (1 HSPs)
scaffold0740 (13-116)||(2736-2839)
[»] chr8 (3 HSPs)
chr8 (19-103)||(40147455-40147539)
chr8 (19-103)||(14139420-14139504)
chr8 (8-59)||(13767131-13767182)
[»] scaffold0057 (1 HSPs)
scaffold0057 (28-99)||(60652-60723)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 7e-56; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 7e-56
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 4179205 - 4179314
Alignment:
Q  8 cttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4179205 cttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcctt 4179304  T
Q  108 taattttgct 117  Q
    ||||||||||    
T  4179305 taattttgct 4179314  T

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Target: chr3; HSP #2
Raw Score: 105; E-Value: 7e-53
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 4172878 - 4172986
Alignment:
Q  8 cttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4172878 cttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgattcagatgataattttatcattagaaacttcactttttcctt 4172977  T
Q  108 taattttgc 116  Q
    |||||||||    
T  4172978 taattttgc 4172986  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 46589981 - 46589891
Alignment:
Q  13 tacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcacttttt 103  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  46589981 tacgttttatgatattaaagttgcatctttaaaattgtagataatttgactgatctagatgataattttattattagaaacttcacttttt 46589891  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 30694768 - 30694681
Alignment:
Q  9 ttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttc 96  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  30694768 ttactacgttttacgatattaaagttgcatctttaaaattggagataatttgattgatctagatgataattttatcattagaaacttc 30694681  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 45731603 - 45731497
Alignment:
Q  8 cttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcctt 107  Q
    |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| || || |||||||||| || |||||||||||||||| ||| |     
T  45731603 cttactacgtattacgatattaaagttgcatctttaaaattgttgataatttgactaattcaaatgataatttaattattagaaacttcacttgttcgtg 45731504  T
Q  108 taatttt 114  Q
    |||||||    
T  45731503 taatttt 45731497  T

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Target: chr7 (Bit Score: 89; Significance: 2e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-43
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 48260722 - 48260830
Alignment:
Q  8 cttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcctt 107  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||     
T  48260722 cttactatgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccggatgataattttatcattaaaaacttcattttttcctg 48260821  T
Q  108 taattttgc 116  Q
    |||||||||    
T  48260822 taattttgc 48260830  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 37381515 - 37381602
Alignment:
Q  19 ttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcct 106  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  37381515 ttacgatattaaagttgtatctttaaaattgtagataacttgactgatctagatgataattttttcattagaaacttcactttttcct 37381602  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 42694849 - 42694751
Alignment:
Q  5 acacttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcacttttt 103  Q
    |||||||||| || ||| ||||||||| ||| |||||||||||| | |||||||| |||||| ||||| ||||| ||||||||| ||||||||||||||    
T  42694849 acacttactatgtgttaggatattaaaattggatctttaaaattattgataatttaactgattcagattataatcttatcattataaacttcacttttt 42694751  T

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Target: chr2 (Bit Score: 81; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 9795533 - 9795629
Alignment:
Q  8 cttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttc 104  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  9795533 cttactacgttatacgatattaaagttgcatctttaaaattgtagataatttgactaatctagatgataattttatcattagaaacttcactttttc 9795629  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 35917942 - 35917847
Alignment:
Q  8 cttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcacttttt 103  Q
    ||||||| || ||| | ||||||||||| || ||||||||| | |||||||| | |||| || ||||||||||||||||||||||||| |||||||    
T  35917942 cttactaagtgttatggtattaaagttgcatttttaaaattattgataatttaaatgattcaaatgataattttatcattagaaactttacttttt 35917847  T

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Target: chr6 (Bit Score: 79; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 15107828 - 15107718
Alignment:
Q  11 actacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcctttaa 110  Q
    ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||  |||    
T  15107828 actacgtgttacgatagtaaagttgcatctttaaaattgtagataatttgactgatctagatgataactttttcattagaaacttcactttttccagtaa 15107729  T
Q  111 ttttgcttgcc 121  Q
    |||||||||||    
T  15107728 ttttgcttgcc 15107718  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 19403289 - 19403385
Alignment:
Q  19 ttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcctttaattttg 115  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||| ||||||||||||| ||||||||    
T  19403289 ttacaatattaaagttgcatctttaaaattgtagataatttgactgattcagatggtaatttattcattagaaatttcactttttcctgtaattttg 19403385  T

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Target: chr1 (Bit Score: 78; Significance: 9e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 9e-37
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 27024388 - 27024287
Alignment:
Q  12 ctacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcctttaat 111  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||    
T  27024388 ctacgttttacgatattaaagtttcatctttaaaattgtagataatttgactgatcctgatgataattttatcattagaaacttcacctttttctataat 27024289  T
Q  112 tt 113  Q
    ||    
T  27024288 tt 27024287  T

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Target: scaffold1619 (Bit Score: 77; Significance: 3e-36; HSPs: 1)
Name: scaffold1619
Description:

Target: scaffold1619; HSP #1
Raw Score: 77; E-Value: 3e-36
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 781 - 677
Alignment:
Q  11 actacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcctttaa 110  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | |||    
T  781 actacgtgttacgatattaaagttgtatattcaaaattgtagataatttgactgatcgagatgataattttttcattagaaacttcactttttcatgtaa 682  T
Q  111 ttttg 115  Q
    |||||    
T  681 ttttg 677  T

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Target: chr5 (Bit Score: 72; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 11140960 - 11141055
Alignment:
Q  11 actacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcct 106  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  11140960 actacgtgttatgatattaaagttgcatctttaaaattgtagataattttactgatccaaatgataattttttcattagaaacttcactttttcct 11141055  T

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Target: chr4 (Bit Score: 72; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 54421009 - 54421104
Alignment:
Q  11 actacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcct 106  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  54421009 actacgtgttacgatattaaagttgcatctttaaaattgtagacaattcgactgattcagatgataattttttcattagaaacttcactttttcct 54421104  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 8192181 - 8192086
Alignment:
Q  8 cttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcacttttt 103  Q
    |||||| ||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||    
T  8192181 cttacttcgtgttacgatattaaagttgcatctttaaaattgttgataatttaactgatccagatgataatattatcattagaaactttacttttt 8192086  T

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Target: scaffold0105 (Bit Score: 68; Significance: 8e-31; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 18756 - 18661
Alignment:
Q  8 cttactacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcacttttt 103  Q
    |||||| ||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||    
T  18756 cttacttcgtgttacgatattaaagttgcatctttaaaattgttgataatttaactgatccagatgataatattatcattagaaactttacttttt 18661  T

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Target: scaffold0740 (Bit Score: 60; Significance: 5e-26; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 2839 - 2736
Alignment:
Q  13 tacgttttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcactttttcctttaatt 112  Q
    ||||| ||||||||||||||||| |||||||||||| | |||||||||| ||||||| || ||||||||||||||| ||||||||||||||  | |||||    
T  2839 tacgtgttacgatattaaagttgcatctttaaaatttttgataatttgattgatccaaattataattttatcattacaaacttcactttttaatgtaatt 2740  T
Q  113 ttgc 116  Q
    ||||    
T  2739 ttgc 2736  T

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Target: chr8 (Bit Score: 49; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 40147539 - 40147455
Alignment:
Q  19 ttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcacttttt 103  Q
    ||||| ||||||||||| || ||||||||||| |||||||| | |||| ||| |||||||||||||||||||||||||| |||||    
T  40147539 ttacggtattaaagttgcatttttaaaattgttgataatttaaatgattcaggtgataattttatcattagaaacttcatttttt 40147455  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 14139420 - 14139504
Alignment:
Q  19 ttacgatattaaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcacttttt 103  Q
    |||||||||||||| || |||||||||||||| || ||||| |||||| |  |||||||||||||||||| || |||||||||||    
T  14139420 ttacgatattaaagatgcatctttaaaattgttgacaatttaactgattcgtatgataattttatcattaaaagcttcacttttt 14139504  T

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Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 13767131 - 13767182
Alignment:
Q  8 cttactacgttttacgatattaaagttgtatctttaaaattgtagataattt 59  Q
    |||| ||||| ||||||||||||||||| ||||||||| || | ||||||||    
T  13767131 cttattacgtattacgatattaaagttgcatctttaaattttttgataattt 13767182  T

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Target: scaffold0057 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 60652 - 60723
Alignment:
Q  28 taaagttgtatctttaaaattgtagataatttgactgatccagatgataattttatcattagaaacttcact 99  Q
    |||||||| || || ||||||||||||||||||||| |||  |||||||||||| |||||||||||||||||    
T  60652 taaagttgcatattcaaaattgtagataatttgactaatcgggatgataattttttcattagaaacttcact 60723  T

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