View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405-Insertion-29 (Length: 52)
Name: NF4405-Insertion-29
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-29 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 46; Significance: 4e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-18
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 49438523 - 49438568
Alignment:
| Q |
7 |
atgttctgtatgcaaatcttcaagaattggacatccagccagaagc |
52 |
Q |
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| T |
49438523 |
atgttctgtatgcaaatcttcaagaattggacatccagccagaagc |
49438568 |
T |
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Target: chr3; HSP #2
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 49434686 - 49434725
Alignment:
| Q |
13 |
tgtatgcaaatcttcaagaattggacatccagccagaagc |
52 |
Q |
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| T |
49434686 |
tgtatgtaaatcttctagaattggacatccagccaaaagc |
49434725 |
T |
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