View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4405-Insertion-3 (Length: 943)
Name: NF4405-Insertion-3
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 695; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 7 - 778
Target Start/End: Complemental strand, 45703618 - 45702846
Alignment:
| Q |
7 |
agttttgtggtaacaaaggtatttacccacttgatgaatgaaaattaacattttaaaatgtgtgagatgtatgcatatgagagataggtaaccaaagagt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45703618 |
agttttgtggtaacaaaggtatttacccacttgatgaatgaaaattaacattttaaaatgtgtgagatgtatgcatatgagagataggtaaccaaagagt |
45703519 |
T |
|
| Q |
107 |
ttttggtctgaagttgtgagtacatcaacgtaattgatcaatagaagtctgtcaacacaacttcaagagaactatgaatgtttggagtggaaaaccaaca |
206 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45703518 |
ttcaggtctgaagttgtgagtacatcaacgtaattgatcaatagaagtctgtcaacacaacttcaagagaactatgaatgtttggagtggaaaaccaaca |
45703419 |
T |
|
| Q |
207 |
aactgctataatttcaaagttttcataactttggcgttcatgcatatcaagcaagaaaagattgatggtagggttgtaaaacgtgccttctttaatttgg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45703418 |
aactgctataatttcaaagttttcataactttggcgttcatgcatatcaagcaagaaaagattgatggtagggttgtaaaacgtgtcttctttaatttgg |
45703319 |
T |
|
| Q |
307 |
ttatattgaacgagcaagaattacaagttgctgataatggaaaaagagaaggatcaggatttattataagcataaatattatttttgatgagaccaatat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45703318 |
ttatattgaacgagcaagaattacaagttgctgataatggaaaaagagaaggatcaggatttattataagcataaatattatttttgatgagaccaatat |
45703219 |
T |
|
| Q |
407 |
gtggatgaagtgcaaggacctattgaatattcactcagaaacaaagtagaagaagacatagtttgagttggagccttccactagtgagacaagagacaaa |
506 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45703218 |
gtggatgaagtgcaaggacctactgaatattcactcagaaacaaagtagaagaaaacttagtttgagttggagccttccactagtgagacaagagacaaa |
45703119 |
T |
|
| Q |
507 |
gaagagggtgagactcctccatcaa--atactagaggaagacaaacaacaacggattttgaccatcaattggatagagatgaggaatatagggatattgt |
604 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45703118 |
gaagagggtgagactcctccatcaaatatactagaggaagacaaacaacaacggattttgaccatcaattggatagagatgaggaatatagggatattgt |
45703019 |
T |
|
| Q |
605 |
tccaccaataagatatcgctttgttgttcatattctttatgctctaaatgcagatgaaaggttgaaaaacttagaaacaaaggccttcaaaaaagcattt |
704 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45703018 |
tccaccaataagatatggctttgttgtccatattttttatgctctaaatgcggatgaaaggttgaaaaacttagaaacaaaggccttcaagaaagcattt |
45702919 |
T |
|
| Q |
705 |
gagagcaatgagagtctaaaatagtttgaaggccattaacgaggaaattcattcattggagatgaactgacttg |
778 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
45702918 |
gagagcaatgagagtctgaaatagttt-aaggccatgaatgaggaaattcattcattggagatgaactaacttg |
45702846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 776 - 907
Target Start/End: Complemental strand, 45702810 - 45702680
Alignment:
| Q |
776 |
ttggatgtaagtagatcttcaagaacaaagaaggtatttagagaattaaagaaccaaagtataaaacaagagttgtggctaaagggtttttctcgggtta |
875 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
45702810 |
ttggatgtaagtggatcttcaagaacaaggaaggtatttagagaattaaagaaccaaagtataaaacaagagttgtggct-aagggtttttcccgggtta |
45702712 |
T |
|
| Q |
876 |
agagatttgattacaatgagattttctcatcg |
907 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
45702711 |
agagatttgattacaatgagattttcgcatcg |
45702680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 356 - 428
Target Start/End: Original strand, 15314749 - 15314821
Alignment:
| Q |
356 |
aggatcaggatttattataagcataaatattatttttgatgagaccaatatgtggatgaagtgcaaggaccta |
428 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||||| | ||| ||||||||||||| |||||| |
|
|
| T |
15314749 |
aggatcaaaatttattataagcagggatgttatttttgatgagacccacatggggatgaagtgcaaagaccta |
15314821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University