View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4405-Insertion-4 (Length: 937)
Name: NF4405-Insertion-4
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 714; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 8 - 811
Target Start/End: Complemental strand, 223389 - 222584
Alignment:
| Q |
8 |
ctacaaagtctctttgtcattgtttttgttcttttgtgtctgtttgcatgtcgatcacttgttctgttaagtgtttctttcatactaaggttgtaaaaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
223389 |
ctacaaagtctctttgtcattgtttttgttcttttgtgtctgtttgcatgtcgatcacttgttctgttaagtgtttctttcatactaaggttgtaaaaat |
223290 |
T |
|
| Q |
108 |
tgattttgaaacttttattgtgagtttagtttagtttatgtttggttcagttttggatgtggcaaaatttattcaagagagatgtgaaattgattttgac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
223289 |
tgattttgaaacttttattgtgagtttagtttagtttatgtttggtttagttttggatgtggcaaaatttattctagaga--tgtgaaattgattttgac |
223192 |
T |
|
| Q |
208 |
annnnnnnaatgataaatgttagtatgttaattgttgtgtg---ttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttag |
304 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
223191 |
atttttttaatgataaatgttagtatgttaattgttgtgttagtttttttatttccttgtgaggacttgaatcctaggcttccgactacttaactcttag |
223092 |
T |
|
| Q |
305 |
ctcaaaccagttgagctatccaaccccccttgcttgtgctcgagtaaaattgattttgcttctagaattgttatcaatctgaagctagaatttagagctt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
223091 |
ctcaaaccagttgagctatccaaccccccttgcttgtgctcgagtaaaattgattttgcttctagaattgttatcaatctgaagctagaatttagagctt |
222992 |
T |
|
| Q |
405 |
ttgtcactacaaactacaataacttatacttgattacattcccatagttgaattgaaagtgattgcatagtacatacttagttgaattcattaaactccc |
504 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
222991 |
ttgtcactacaaactacaataacttatgtttgattacattcccatagttgaattgaaagtgattgcatagtacatacttagttgaattcattaaactccc |
222892 |
T |
|
| Q |
505 |
ttaagagtgaattcaacaataaatctgagactaaaatcacacttggagtacaacacttcaaatctcaactttaaggtagaattcattctttgtaatacgt |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
222891 |
ttaagagtgaattcaacaataaatctgagactaaaatcacacttggagtgcaatacttaaaatctcaactttaaggtagaattcattctttgtaatacgt |
222792 |
T |
|
| Q |
605 |
ttctgcgctaaatacttctatgattgtaatcaaataaatccttcttgagaagaaaagcacgaaaaatatttaatctttttggaatcgtctttgtgttttg |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
222791 |
ttctgcgctaaatacttctatgattgtaatcaaataaatccttcttgagaagaaaagcacgaaaaatatttaatctttttggaatcgtctttgtgttttg |
222692 |
T |
|
| Q |
705 |
aaattgatgactcgaaactgtgatattgaagtt-cggaaacgctgctgcttttcacctctatgtgaaggagtgaactgtggttagcttgtaattttatgc |
803 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
222691 |
aaattgatgactcgaaactgtgatattgaagttacggaaacgctgctgcttttcacctctatgtgaaggagtgaactgtggttagcttgtaattttatga |
222592 |
T |
|
| Q |
804 |
ttttatat |
811 |
Q |
| |
|
|||||||| |
|
|
| T |
222591 |
ttttatat |
222584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 822 - 935
Target Start/End: Complemental strand, 217597 - 217486
Alignment:
| Q |
822 |
aaaatgataaaatgtgtttttctcgaaagtctctttacgattgtttagggaatctattttgaatgctttgtgactcttttacatgattcgaattaatttt |
921 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
217597 |
aaaatgataaattgtgcttc-ctcgaaagtctctttacgattgtttagggaatctatttgaaatgctttgtgactcttttacatgattcgatttaatttt |
217499 |
T |
|
| Q |
922 |
ggacatttggtatg |
935 |
Q |
| |
|
||||||||||||| |
|
|
| T |
217498 |
-gacatttggtatg |
217486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 218170 - 218020
Alignment:
| Q |
54 |
catgtcgatcacttgttctgttaagtgtttctttcatactaaggttgtaaaaattgattttgaaacttttattgtgagtttagtttagtttatgtttgg- |
152 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||| ||||||||||||||||||||||| || ||||| || | |||||||||| ||||||||| |
|
|
| T |
218170 |
catgttgatcacttgttctgtttattgtttctttcattctaaggttgtaaaaattgatttttaatcttttctt---aagttagtttagtgtatgtttggt |
218074 |
T |
|
| Q |
153 |
ttcagttttggatgtggcaaaatttattcaagagagatgtgaaattgattttgaca |
208 |
Q |
| |
|
|||| |||||||| ||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
218073 |
ttcacttttggataaggcaaaattgatt--ttggagatgtgaaattgattttgaca |
218020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 384 - 457
Target Start/End: Complemental strand, 217998 - 217925
Alignment:
| Q |
384 |
tgaagctagaatttagagcttttgtcactacaaactacaataacttatacttgattacattcccatagttgaat |
457 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||||||||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
217998 |
tgaagctagaatttggagtttttgtctctacaaactacattaacttatgtttgatttcattcccatagttgaat |
217925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 806 - 868
Target Start/End: Complemental strand, 222569 - 222508
Alignment:
| Q |
806 |
ttatattatgaattacaaaatgataaaatgtgtttttctcgaaagtctctttacgattgttta |
868 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
222569 |
ttatattatgaattacaaaatgataaaatgtg-ctttctcgaaagtctctttataattgttta |
222508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 584 - 686
Target Start/End: Complemental strand, 217829 - 217729
Alignment:
| Q |
584 |
aattcattctttgtaatacgtttctgcgctaaatacttctatgattgtaatcaaataaatccttcttgagaagaaaagcacgaaaaatatttaatctttt |
683 |
Q |
| |
|
||||||||||||||| || | |||||| |||||||||| ||| ||||||| ||| |||||| | | |||| ||||||| ||||||||||||||||||| |
|
|
| T |
217829 |
aattcattctttgtattatgcttctgc--taaatacttcaatggttgtaataaaaaaaatcccttgtaagaaaaaaagcatgaaaaatatttaatctttt |
217732 |
T |
|
| Q |
684 |
tgg |
686 |
Q |
| |
|
||| |
|
|
| T |
217731 |
tgg |
217729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 29728744 - 29728864
Alignment:
| Q |
216 |
aatgataaatgttagtatgttaattgttgtgt--gttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaacca |
313 |
Q |
| |
|
||||| || ||||||||||||||||||| ||| ||||||| | ||||| |||||||||| ||| | ||| ||| |||||| |||||||||||||| |
|
|
| T |
29728744 |
aatgacaagtgttagtatgttaattgttatgttagttttttttctccttaataggacttgaaccctgaatctccaactccttaacccttagctcaaacca |
29728843 |
T |
|
| Q |
314 |
gttgagctatccaacccccct |
334 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
29728844 |
gttgagctacccaacccccct |
29728864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 38450733 - 38450695
Alignment:
| Q |
293 |
cttaactcttagctcaaaccagttgagctatccaacccc |
331 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
38450733 |
cttaacccttagctcaaaccagttgagctacccaacccc |
38450695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 32002087 - 32002200
Alignment:
| Q |
222 |
aaatgttagtatgttaattgttgtgt--gttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaaccagttgag |
319 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||| | |||||| ||||||| || ||| ||| || || |||||| |||||||||||||||||||| |
|
|
| T |
32002087 |
aaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttaaacccttgaccgccaacaccttaacccttagctcaaaccagttgag |
32002186 |
T |
|
| Q |
320 |
ctatccaacccccc |
333 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
32002187 |
ctaaccaacccccc |
32002200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 333
Target Start/End: Original strand, 46976970 - 46977009
Alignment:
| Q |
294 |
ttaactcttagctcaaaccagttgagctatccaacccccc |
333 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
46976970 |
ttaacccttagctcaaaccagttgagctacccaacccccc |
46977009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 33084987 - 33085020
Alignment:
| Q |
300 |
cttagctcaaaccagttgagctatccaacccccc |
333 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
33084987 |
cttagctcaaaccagttgagctacccaacccccc |
33085020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 29839150 - 29839068
Alignment:
| Q |
52 |
tgcatgtcgatcacttgttct-gttaagtgtttctttcatactaaggttgtaaaaattgattttgaaacttttattgtgagtt |
133 |
Q |
| |
|
||||||| ||||||| ||| | ||| ||||||||||| || | |||||||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
29839150 |
tgcatgttgatcactcgtttttgtttagtgtttcttttatccaaaggttgtaaaaattgtttttgaatcttttattttgagtt |
29839068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 330
Target Start/End: Original strand, 26413398 - 26413513
Alignment:
| Q |
216 |
aatgataaatgttagtatgttaattgttgtgt--gttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaacca |
313 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| | ||||| | ||||| | |||||||||||| ||| ||| ||| | |||||||| ||||||||| |
|
|
| T |
26413398 |
aatgacaaatgttagtatgttaattgttatgttagcttttt-tctcctttccaagacttgaatcctggacatccaactcatgaactcttacctcaaacca |
26413496 |
T |
|
| Q |
314 |
gttgagctatccaaccc |
330 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
26413497 |
gttgagctacccaaccc |
26413513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 36665306 - 36665347
Alignment:
| Q |
290 |
ctacttaactcttagctcaaaccagttgagctatccaacccc |
331 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
36665306 |
ctacttaacccttagctcaaaccagttaagctacccaacccc |
36665347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 222 - 330
Target Start/End: Original strand, 16452169 - 16452277
Alignment:
| Q |
222 |
aaatgttagtatgttaattgttgtgtgttttttatttccttgtgaggacttgaatcctagacttccgactacttaactcttagctcaaaccagttgagct |
321 |
Q |
| |
|
|||||||||||||||| ||||| || |||| | |||||| |||||||||| || |||| ||| ||| | ||| |||||||||||||||||||||| |
|
|
| T |
16452169 |
aaatgttagtatgttatttgttacgttagttttttctccttgctaggacttgaacccaagacctccaacttttgaacccttagctcaaaccagttgagct |
16452268 |
T |
|
| Q |
322 |
atccaaccc |
330 |
Q |
| |
|
| ||||||| |
|
|
| T |
16452269 |
acccaaccc |
16452277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 36959414 - 36959379
Alignment:
| Q |
300 |
cttagctcaaaccagttgagctatccaacccccctt |
335 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36959414 |
cttagctcaaaccagttgagctacccaacccccctt |
36959379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 10429915 - 10429948
Alignment:
| Q |
300 |
cttagctcaaaccagttgagctatccaacccccc |
333 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
10429915 |
cttagctcaaaccagttgagctacccaacccccc |
10429948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 26849278 - 26849311
Alignment:
| Q |
300 |
cttagctcaaaccagttgagctatccaacccccc |
333 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
26849278 |
cttagctcaaaccagttgagctacccaacccccc |
26849311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 11099008 - 11098943
Alignment:
| Q |
268 |
gacttgaatcctagacttccgactacttaactcttagctcaaaccagttgagctatccaacccccc |
333 |
Q |
| |
|
|||||| | ||| ||||||| ||| |||||| ||||||||||||| | ||||||| |||||||||| |
|
|
| T |
11099008 |
gacttggaccctggacttccaactccttaacccttagctcaaacctgctgagctacccaacccccc |
11098943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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