View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405-Insertion-6 (Length: 915)
Name: NF4405-Insertion-6
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 8 - 636
Target Start/End: Original strand, 30128434 - 30129066
Alignment:
| Q |
8 |
cttgtttctcaggttctgtttctggtggttgttttgctgttgtactgtcttgttttgtggccttcacggggttctggtttcggctacaacatgctgtgtt |
107 |
Q |
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| T |
30128434 |
cttgtttctcaggttctgtttctggtggttgttttgctgttgtactgtcttgttttgtggccttcacggggttctggtttcggctacaacatgctgtgtt |
30128533 |
T |
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| Q |
108 |
tgtctgttttgcttactatgggtttcgggnnnnnnnnnn---gtatcgatgttttgccagtttcagcatcccagtagtggttgttttttgctgtgtttct |
204 |
Q |
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| T |
30128534 |
tgtctgttttgcttactatgggtttcgggttgttttttttttgtatcgatgttttggtagtttcagcatcctagtagtggttgttttttgctgtgtttct |
30128633 |
T |
|
| Q |
205 |
cttcgggtattccgtctatataccacatccgatgttttgtatttccctgtgtggcaagattggtgcatctcgtgcaggttttgcttttcaatatactttg |
304 |
Q |
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| T |
30128634 |
cttcgggtattccgtctatataccacatccgatgttttgtatttccctgtgtggcaagattggtgcatctcgtgcaggttttgcttttcaatatactttg |
30128733 |
T |
|
| Q |
305 |
ctgatagcaaaaatgaatgtgaaatttatgcaaataatataacttgttctgcattaagcttttagtaaataagtggctgcattgcataagcattaaattg |
404 |
Q |
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| T |
30128734 |
ctgatagcaaaaatgaatgtgaaatttatgcaaataatataatttgttctgcattaagcttttagtaaataagtggatacattgcataagcattaaattg |
30128833 |
T |
|
| Q |
405 |
tgattttccaggttgaactctaaagaacaataggttcaaataattgacttttctgctgttaataatgcagttattgttac-taagtggaggcattgcatt |
503 |
Q |
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| T |
30128834 |
tgattttctaggttgaactctaaagaacaataggttcaaataattgacttttctgctgttaataatgcagttattgttacttaagtggaggcattgcatt |
30128933 |
T |
|
| Q |
504 |
aaatgtttaaatagataagtagctcccaattgattaaggcttgattgacaaggtaaaagttttggttaggtgaacataagcgacttcatgagaaatccat |
603 |
Q |
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| T |
30128934 |
aaatgtttaaatagataagtagctcccaattgattaaggcttgattgacaaggtaaaagttttggttaggtgaacataagcgacttcatgagaaatccat |
30129033 |
T |
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| Q |
604 |
ggtttgtggattagttgctttatgcattgtcat |
636 |
Q |
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| T |
30129034 |
ggtttgtggattagttgctttatgcattgtcat |
30129066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 633 - 739
Target Start/End: Original strand, 30129785 - 30129890
Alignment:
| Q |
633 |
tcatccatggtattattgactattactcaatttttaaatagatctgctgttactttcctaaaaccaaaattaaataaaggtttcagcaaataattataca |
732 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
30129785 |
tcatccatggtattgttgactattactcaatttttacatagatctgctgttactttcctaaaaccaaaattaaataaaggtttcaac-aataattataca |
30129883 |
T |
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| Q |
733 |
tttatat |
739 |
Q |
| |
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||||||| |
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| T |
30129884 |
tttatat |
30129890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 559
Target Start/End: Complemental strand, 4365469 - 4365351
Alignment:
| Q |
443 |
aataattgacttttctgctgttaataatgcagttattgttact-aagtggaggcattgcattaaatgtttaaatagataagtagctc-ccaattgattaa |
540 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||||| | |||| || ||||||||| | | |||||| ||||||||||||| ||||||| | |
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| T |
4365469 |
aataattggcttttgtgctgttaataatgcagttactgttaatgaagttgaagcattgcatgagctatttaaaaagataagtagctctgtaattgatgat |
4365370 |
T |
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| Q |
541 |
ggcttgattgacaaggtaa |
559 |
Q |
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| T |
4365369 |
ggcttgattcacaaggtaa |
4365351 |
T |
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Back To:
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