View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4405-Insertion-8 (Length: 856)
Name: NF4405-Insertion-8
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405-Insertion-8 |
 | |
|
| [»] chr6 (8 HSPs) |
| |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 791; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 791; E-Value: 0
Query Start/End: Original strand, 10 - 856
Target Start/End: Original strand, 11755124 - 11755970
Alignment:
| Q |
10 |
gacatcccaaagttgcaagagccggatagagcagaagtatgttattcgttatttatagatcaattgaatagaaaaaagcagaaggatccatcatctcggt |
109 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11755124 |
gacatcccaaagttgcaagagtcggatagagcagaagtatgttattcgttatttatagaacaattgaatagaaaaaagcagaaggatccatcatctcgat |
11755223 |
T |
|
| Q |
110 |
catcggtgttatggacaatcgttttgtgccgccggagagagattttgatatctggattctttgcatttctcaaggtactcactctttcttcttgtcctat |
209 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11755224 |
catcggtgttatggacaattgttttttgccaccggagagagattttgatatctggattctttgcatttctcaaggtactcactctttcttcttgtcctat |
11755323 |
T |
|
| Q |
210 |
agttttgaatgcctttatactggtggctgagggtaatcaaagtttcaaatttgaaggttactttttggccatctcacttttgtttatcaagattttagag |
309 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11755324 |
aatattgaatgcctttatactggtggctgagggtaatcaaagtttcaaatttgaaggttactttttggcaatctcacttttgtttatcaagattttagag |
11755423 |
T |
|
| Q |
310 |
tccctatctcaaaggcaatggtattttcgctcaagggttattggtatgaaagttaggtcattacttattgcatcaatttataagaaacaattgaaattat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11755424 |
tccctatctcaaaggcaatggtattttcgctcaagggttattggtatgaaagttaggtcattacttattgcatcaatttataagaaacaattgaaattat |
11755523 |
T |
|
| Q |
410 |
ccaatgctgctagattgattcactcgagcggtgagataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcaccagac |
509 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11755524 |
ccaatgctgctagattgattcactctagcggtgagataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcaccagac |
11755623 |
T |
|
| Q |
510 |
atggacaacagtcctccaactatcaattgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtg |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11755624 |
atggacaacagtcctccaactatcaattgcattagtaattctttttcgcgctattggattggcaacaattgcatcgttggtggtgatatttttgaccgtg |
11755723 |
T |
|
| Q |
610 |
cttttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtga |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11755724 |
cttttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaggctctggtga |
11755823 |
T |
|
| Q |
710 |
acatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtactatt |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11755824 |
acatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctatt |
11755923 |
T |
|
| Q |
810 |
acaaaaggcatacagccttatgctcttttggttttcacctactttgg |
856 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11755924 |
acaaaaggcatacagccttatgctcttttggttttcacctactttgg |
11755970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 8 - 856
Target Start/End: Complemental strand, 12094813 - 12093965
Alignment:
| Q |
8 |
aggacatcccaaagttgcaagagccggatagagcagaagtatgttattcgttatttatagatcaattgaatagaaaaaagcagaaggatccatcatctcg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12094813 |
aggacatcccaaagttgcaagagccggatagagcagaagtatgttattcgttatttatagaacaatcgaatagaaaaaagcagaaggatccatcatctcg |
12094714 |
T |
|
| Q |
108 |
gtcatcggtgttatggacaatcgttttgtgccgccggagagagattttgatatctggattctttgcatttctcaaggtactcactctttcttcttgtcct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12094713 |
atcatcggtgttatggacaatcgttttgtgccaccggagagagattttgatatctggattttttgcatttctcaaggtactcactctttcttcttgtcct |
12094614 |
T |
|
| Q |
208 |
atagttttgaatgcctttatactggtggctgagggtaatcaaagtttcaaatttgaaggttactttttggccatctcacttttgtttatcaagattttag |
307 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12094613 |
ataattttgaatgcctttatactggtggctgagggtaatcaaagtttcaaatttgaaggttattttttggccatctcacttttgtttatcaagattttag |
12094514 |
T |
|
| Q |
308 |
agtccctatctcaaaggcaatggtattttcgctcaagggttattggtatgaaagttaggtcattacttattgcatcaatttataagaaacaattgaaatt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||| ||||||| ||||||| |
|
|
| T |
12094513 |
agtccctatctcaaaggcaatggtattttcgctcaagggttattggtatgaaagttagatcgttacttactgcatctatttataggaaacaactgaaatt |
12094414 |
T |
|
| Q |
408 |
atccaatgctgctagattgattcactcgagcggtgagataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcaccag |
507 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12094413 |
atccaatgctgctagattgattcactctagcggtgagataatgaactatgtgaatgtggatgcgtatagaatcggagaatttccgttctggtttcaccag |
12094314 |
T |
|
| Q |
508 |
acatggacaacagtcctccaactatcaattgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
12094313 |
acatggacaacagtcctccaactatcaattgcattagtaattctttttcgtgctattggattggcaacaattgcgtcattggtggtgatagttttgaccg |
12094214 |
T |
|
| Q |
608 |
tgcttttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggt |
707 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
12094213 |
tgtttttgaatgctccactagcaaagttacaacataagtatcttagtaaacttctggtggcccaagatgaaaggttgaaggctagttctgaggctctggt |
12094114 |
T |
|
| Q |
708 |
gaacatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtacta |
807 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
12094113 |
gaatatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaacaaaaattgttatcttcagtgtta |
12094014 |
T |
|
| Q |
808 |
ttacaaaaggcatacagccttatgctcttttggttttcacctactttgg |
856 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12094013 |
ttacaaaaggcatacagccttattctcttttggttttcacctactttgg |
12093965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 38 - 756
Target Start/End: Complemental strand, 11740558 - 11739837
Alignment:
| Q |
38 |
gagcagaagtatgttattcgttatttatagatcaattgaatagaaaaaagcagaaggatc---catcatctcggtcatcggtgttatggacaatcgtttt |
134 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||| |||| ||| |||||||||||| ||||||| |||| | ||| ||| ||||||| |||| |
|
|
| T |
11740558 |
gagcagaagcatgttattcaatgtttatagatcaactgaacagactaaagcagaaggacgaatcatcatcatggtcgttggttttacggacaataatttt |
11740459 |
T |
|
| Q |
135 |
gtgccgccggagagagattttgatatctggattctttgcatttctcaaggtactcactctttcttcttgtcctatagttttgaatgcctttatactggtg |
234 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||||||||| |||||||||||| | ||||||| |||||||||| |||||||||||||||| ||| | |
|
|
| T |
11740458 |
gtgccatcgtagagaaattttgatatcaggattctttgcattactcaaggtactcgcactttcttgttgtcctataattttgaatgcctttattttggcg |
11740359 |
T |
|
| Q |
235 |
gctgagggtaatcaaagtttcaaatttgaaggttactttttggccatctcacttttgtttatcaagattttagagtccctatctcaaaggcaatggtatt |
334 |
Q |
| |
|
|| |||| |||| |||||| ||||| |||| |||| | || ||||||||||||||||||| || ||| |||| ||| |||| |||||||| ||||||| |
|
|
| T |
11740358 |
gccgaggataatgaaagttccaaatatgaaagttatgtattagccatctcacttttgtttacaaaaattatagaatccttatcccaaaggcagtggtatt |
11740259 |
T |
|
| Q |
335 |
ttcgctcaagggttattggtatgaaagttaggtcattacttattgcatcaatttataagaaacaattgaaattatccaatgctgctagattgattcactc |
434 |
Q |
| |
|
||||| | || || ||||||||||||||| |||||||||| | ||| | |||||||||||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
11740258 |
ttcgcgctagacttgttggtatgaaagttaagtcattacttgtcgcagccgtttataagaaacaactgaggttatccaatgctgctaaattgattcactc |
11740159 |
T |
|
| Q |
435 |
gagcggtgagataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcaccagacatggacaacagtcctccaactatca |
534 |
Q |
| |
|
| || ||||||||||| |||||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| | |||||||||| |
|
|
| T |
11740158 |
tggtggcgagataatgaattatgtgaatgtggatgcttatagaattggagaattaccgttttggtttcaccattcatggacaacatttctccaactatgt |
11740059 |
T |
|
| Q |
535 |
attgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtgcttttgaatgctccactagcaaagt |
634 |
Q |
| |
|
||| |||| || ||| ||||||| || ||| | || |||||||||||||||||||||||||||||||| | ||| || ||| ||||||||||||||| |
|
|
| T |
11740058 |
atttcattggtcattatttttcgtgcggttgggcttgcgacaattgcatcgttggtggtgatagttttgacggcgctattaaatactccactagcaaagt |
11739959 |
T |
|
| Q |
635 |
tacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaacatgaaagtgctaaagttatatgc |
734 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| || ||||| ||||| |||||||| | ||||||||||| |
|
|
| T |
11739958 |
tacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagtgttgaagttatatgc |
11739859 |
T |
|
| Q |
735 |
atgggaaatgcattttaaaaat |
756 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
11739858 |
atgggaaacccattttaaaaat |
11739837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 109 - 756
Target Start/End: Complemental strand, 11632649 - 11632002
Alignment:
| Q |
109 |
tcatcggtgttatggacaatcgttttgtgccgccggagagagattttgatatctggattctttgcatttctcaaggtactcactctttcttcttgtccta |
208 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||| |||||||||||||| || | ||||||||||| || | ||||||||| |||| |||||| |||| |
|
|
| T |
11632649 |
tcatcggttttatggaccatctttttgtgccattggagagagattttggtaaccggattctttgcgttgtttaaggtactcgctctatcttctactcctc |
11632550 |
T |
|
| Q |
209 |
tagttttgaatgcctttatactggtggctgagggtaatcaaagtttcaaatttgaaggttactttttggccatctcacttttgtttatcaagattttaga |
308 |
Q |
| |
|
|| || | |||||||| ||| |||| || |||||||| |||||||||||| ||||||||| | |||||| | ||||| || |||| || || |||| |
|
|
| T |
11632549 |
tacttcttaatgccttcatattggttgccgagggtaacgaaagtttcaaatatgaaggttatgtattggccgtttcactctttgttataaaaatcataga |
11632450 |
T |
|
| Q |
309 |
gtccctatctcaaaggcaatggtattttcgctcaagggttattggtatgaaagttaggtcattacttattgcatcaatttataagaaacaattgaaatta |
408 |
Q |
| |
|
|||||||| ||||| ||||||||||| | | | || || |||| ||||||||||| ||| |||||| |||| | |||||||||||| ||| || |
|
|
| T |
11632449 |
atccctatcacaaagacaatggtatttccacactagacttgttgggatgaaagttagatcactacttaatgcagccatttataagaaaatattacggcta |
11632350 |
T |
|
| Q |
409 |
tccaatgctgctagattgattcactcgagcggtgagataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcaccaga |
508 |
Q |
| |
|
|| ||| ||||||| ||||||||||| | |||||||||||||| || ||| ||| ||||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
11632349 |
tcgaattctgctaggttgattcactctggtggtgagataatgaattacatgatcgtagatgcttatagaatcggagaatttccattctggtttcaccaga |
11632250 |
T |
|
| Q |
509 |
catggacaacagtcctccaactatcaattgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgt |
608 |
Q |
| |
|
||||||||||| | |||||| | | |||||||||||||||||||| ||| | | |||| | ||||| ||||||| |||| |||||||||| | || || |
|
|
| T |
11632249 |
catggacaacaattctccaattgtgtattgcattagtaattcttttccgcacaattggactagcaacgcttgcatcattggcggtgatagttctcactgt |
11632150 |
T |
|
| Q |
609 |
gcttttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtg |
708 |
Q |
| |
|
| ||| ||| ||||||||||||||||||||| ||||||| || |||||| ||||||| |||||||| || || || |||||||| || ||||| ||| |
|
|
| T |
11632149 |
gatttgcaattatccactagcaaagttacaacacaagtatcagagcaaacttatggtggcacaagatgagagattaaaggctagttcggaggctcttgtg |
11632050 |
T |
|
| Q |
709 |
aacatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaat |
756 |
Q |
| |
|
|| ||||||||| | ||||| ||||| ||||||| |||||||||||| |
|
|
| T |
11632049 |
aatatgaaagtgttgaagttgtatgcgtgggaaaatcattttaaaaat |
11632002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 109 - 754
Target Start/End: Original strand, 11662399 - 11663044
Alignment:
| Q |
109 |
tcatcggtgttatggacaatcgttttgtgccgccggagagagattttgatatctggattctttgcatttctcaaggtactcactctttcttcttgtccta |
208 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||| ||| ||||||||||| ||| | ||||||||||| || ||||||||||| || | |||| | | ||| |
|
|
| T |
11662399 |
tcatcggttttatggacaatagttcggtgccaccgaagagagattttaataacaggattctttgctttgctcaaggtacttgctatatcttgtggccctt |
11662498 |
T |
|
| Q |
209 |
tagttttgaatgcctttatactggtggctgagggtaatcaaagtttcaaatttgaaggttactttttggccatctcacttttgtttatcaagattttaga |
308 |
Q |
| |
|
|| || | ||||| |||||| |||| ||||||| ||| |||||||||||| ||||||||| | |||||||| |||||||| || || ||||| |||| |
|
|
| T |
11662499 |
tacttcttaatgcttttatattggtttctgagggaaatgaaagtttcaaatatgaaggttatatattggccatatcacttttcttcataaagatcataga |
11662598 |
T |
|
| Q |
309 |
gtccctatctcaaaggcaatggtattttcgctcaagggttattggtatgaaagttaggtcattacttattgcatcaatttataagaaacaattgaaatta |
408 |
Q |
| |
|
||| |||| || || ||||||||||||||| ||| || |||| ||||||||||| ||| |||||| ||| ||||||| ||| ||| | | || |
|
|
| T |
11662599 |
atccatatcacagagacaatggtattttcgcggaagacttgttggcatgaaagttagatcactacttaccgcagtcgtttataaaaaaacattaagacta |
11662698 |
T |
|
| Q |
409 |
tccaatgctgctagattgattcactcgagcggtgagataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcaccaga |
508 |
Q |
| |
|
|||||| |||||||||||||||||||||| || ||||||||||| ||| ||| ||||| | |||||||| ||||||||||| || ||||||||||||| |
|
|
| T |
11662699 |
tccaattctgctagattgattcactcgagtggcgagataatgaattatatgactgtggacacttatagaattggagaatttccattctggtttcaccaga |
11662798 |
T |
|
| Q |
509 |
catggacaacagtcctccaactatcaattgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgt |
608 |
Q |
| |
|
| ||||| ||| |||||||| | | ||||||||||||||||||||| | || | |||| |||||||| || || ||| ||||||||| | || | |
|
|
| T |
11662799 |
cttggaccacaatcctccaaatgtgtattgcattagtaattctttttggtgcaattggaccagcaacaatagcttcaatggcagtgatagttctcacgat |
11662898 |
T |
|
| Q |
609 |
gcttttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtg |
708 |
Q |
| |
|
||||| || |||||||||||||||| ||||| |||| || ||| ||||| ||||||| ||||| || || ||||| ||||||||||| ||||| ||| |
|
|
| T |
11662899 |
gctttgcaacactccactagcaaagttgcaacacaagtttcagagtgaacttatggtggcacaagacgagagattgaaggctagttctgaggctcttgtg |
11662998 |
T |
|
| Q |
709 |
aacatgaaagtgctaaagttatatgcatgggaaatgcattttaaaa |
754 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
11662999 |
agtatgaaagtgctaaagctatatgcatgggaaacacattttaaaa |
11663044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 112 - 756
Target Start/End: Original strand, 11617586 - 11618230
Alignment:
| Q |
112 |
tcggtgttatggacaatcgttttgtgccgccggagagagattttgatatctggattctttgcatttctcaaggtactcactctttcttcttgtcctatag |
211 |
Q |
| |
|
||||| ||||||||||| ||||||||| | |||||||||||||||| | |||||||| || ||||||||||||||||| || |||||| ||||||| |
|
|
| T |
11617586 |
tcggttttatggacaataattttgtgccacaagagagagattttgataacaggattcttcgcttttctcaaggtactcacactatcttctggtcctatga |
11617685 |
T |
|
| Q |
212 |
ttttgaatgcctttatactggtggctgagggtaatcaaagtttcaaatttgaaggttactttttggccatctcacttttgtttatcaagattttagagtc |
311 |
Q |
| |
|
|| |||||| |||||| |||| ||||| |||||| |||||||||||| ||||||||| || || ||||| ||| | || || | ||||| |||| || |
|
|
| T |
11617686 |
ttctgaatgaatttatattggttgctgaaggtaatgaaagtttcaaatatgaaggttatttattagccatatcaatcttccttgtaaagatcatagaatc |
11617785 |
T |
|
| Q |
312 |
cctatctcaaaggcaatggtattttcgctcaagggttattggtatgaaagttaggtcattacttattgcatcaatttataagaaacaattgaaattatcc |
411 |
Q |
| |
|
|||||||||| ||||||||||| ||| || || |||| ||||| || | || ||||||| |||| | | |||||| ||| || | |||| |
|
|
| T |
11617786 |
tatatctcaaagacaatggtatttccgcagtagacttgttggagtgaaaattcgatctttacttactgcagccacttataaaaaaatgttaagtctatca |
11617885 |
T |
|
| Q |
412 |
aatgctgctagattgattcactcgagcggtgagataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcaccagacat |
511 |
Q |
| |
|
||| | |||||||||| |||||| | |||||||||||||| ||||| | || ||||| |||||||| ||||||||||| ||||||||||||||||| | |
|
|
| T |
11617886 |
aattcggctagattgaatcactctggtggtgagataatgaattatgttactgtcgatgcttatagaattggagaatttccattttggtttcaccagactt |
11617985 |
T |
|
| Q |
512 |
ggacaacagtcctccaactatcaattgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtgct |
611 |
Q |
| |
|
|||||||| ||||||| | | |||||||| |||||||||| ||| | | |||| | |||||| | ||||| ||||||||||||||| | || ||||| |
|
|
| T |
11617986 |
ggacaacaagcctccaattgtgtattgcattgataattcttttccgcacaattggactagcaacactcgcatcattggtggtgatagttctcactgtgct |
11618085 |
T |
|
| Q |
612 |
tttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaac |
711 |
Q |
| |
|
|| || |||||||||||||| |||||||| |||| || || ||||| ||||||| |||||||| || || || || ||||| || ||||| ||||| |
|
|
| T |
11618086 |
ttgcaacgctccactagcaaacttacaacacaagtttcaaacccaacttatggtggcgcaagatgagagattaaaggcgagttcggaggctcttgtgaat |
11618185 |
T |
|
| Q |
712 |
atgaaagtgctaaagttatatgcatgggaaatgcattttaaaaat |
756 |
Q |
| |
|
||||||||| | ||| ||||||||||||||| |||||||||||| |
|
|
| T |
11618186 |
atgaaagtgttgaagctatatgcatgggaaacacattttaaaaat |
11618230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 145 - 761
Target Start/End: Complemental strand, 11674634 - 11674018
Alignment:
| Q |
145 |
agagagattttgatatctggattctttgcatttctcaaggtactcactctttcttcttgtcctatagttttgaatgcctttatactggtggctgagggta |
244 |
Q |
| |
|
||||||||||||||| | ||||||||||| || ||||||||||||||||| |||||| ||||| || || |||||| |||||| |||| ||||| || | |
|
|
| T |
11674634 |
agagagattttgataaccggattctttgctttgctcaaggtactcactctatcttctggtcctttacttctgaatgagtttatattggttgctgaaggca |
11674535 |
T |
|
| Q |
245 |
atcaaagtttcaaatttgaaggttactttttggccatctcacttttgtttatcaagattttagagtccctatctcaaaggcaatggtattttcgctcaag |
344 |
Q |
| |
|
|| ||||||| ||| ||||||||| | ||||| || |||||||| ||||| ||||| |||| ||| |||| ||| | ||||||||||| || || |
|
|
| T |
11674534 |
ataaaagttttgaatatgaaggttatgtattggcaatatcacttttctttataaagatcctagaatccttatcgcaacgacaatggtatttccgtagtag |
11674435 |
T |
|
| Q |
345 |
ggttattggtatgaaagttaggtcattacttattgcatcaatttataagaaacaattgaaattatccaatgctgctagattgattcactcgagcggtgag |
444 |
Q |
| |
|
| |||| || ||||| || || ||| |||||| |||| | ||| |||| ||| ||| | ||||||| |||||||||| ||||||| || || ||| |
|
|
| T |
11674434 |
gcttatagggatgaaggtcagatcactacttactgcagccattcataaaaaaatattaaggctatccaactctgctagattagttcactctagtggcgag |
11674335 |
T |
|
| Q |
445 |
ataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcaccagacatggacaacagtcctccaactatcaattgcattag |
544 |
Q |
| |
|
|||||||| ||| ||| |||||||| |||||||| ||||||||||| |||||||||||| |||| ||||||||| | || ||||| | |||||||||| |
|
|
| T |
11674334 |
ataatgaattatatgactgtggatgcttatagaattggagaatttccattttggtttcacaagacttggacaacaattcttcaactgtgtattgcattag |
11674235 |
T |
|
| Q |
545 |
taattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtgcttttgaatgctccactagcaaagttacaacataa |
644 |
Q |
| |
|
| ||||||||||| || | ||| | ||||| | || || |||| |||||| || | |||||||||| || |||| ||||||||| ||||||| || |
|
|
| T |
11674234 |
tgattctttttcgtgcaatcggacttgcaaccgtagcttcactggtagtgataattctcaccgtgctttgcaacactccgctagcaaagctacaacacaa |
11674135 |
T |
|
| Q |
645 |
gtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaacatgaaagtgctaaagttatatgcatgggaaatg |
744 |
Q |
| |
|
|| || || ||||| ||||||| |||||||| || || ||||| |||||||| ||||| ||||| ||||||||| | ||| ||||||||||||||| |
|
|
| T |
11674134 |
gtttcagagcaaactaatggtggcgcaagatgagagattaaaagcgagttctgaggctcttgtgaatatgaaagtgttgaagctatatgcatgggaaacc |
11674035 |
T |
|
| Q |
745 |
cattttaaaaattccat |
761 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
11674034 |
cattttaaaaattccat |
11674018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 407 - 756
Target Start/End: Complemental strand, 11710896 - 11710547
Alignment:
| Q |
407 |
tatccaatgctgctagattgattcactcgagcggtgagataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcacca |
506 |
Q |
| |
|
|||||||| ||||||||||||||||||| || |||||||||||||| || | | |||||||| |||||||| ||||||||||| || ||||||||||| |
|
|
| T |
11710896 |
tatccaattctgctagattgattcactctagtggtgagataatgaattacataactgtggatgcttatagaattggagaatttccattctggtttcacca |
11710797 |
T |
|
| Q |
507 |
gacatggacaacagtcctccaactatcaattgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgacc |
606 |
Q |
| |
|
||||||||| ||| |||| ||| | | ||||||||||||||||||| || || | |||| | |||||||| || || |||||||||||||| |||| |
|
|
| T |
11710796 |
gacatggacgacaatccttcaattgtgtattgcattagtaattctttaccgagcaattggactagcaacaatagcttcaatggtggtgatagttctgact |
11710697 |
T |
|
| Q |
607 |
gtgcttttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctgg |
706 |
Q |
| |
|
||||||| || ||||| |||||||||||||| | |||| || || ||||| ||||||| ||||| || || ||||| |||||||| || ||||| | |
|
|
| T |
11710696 |
gtgctttgcaacactccaatagcaaagttacaaaacaagtttcagagcgaacttatggtggcacaagacgagagattgaaggctagttccgaggctcttg |
11710597 |
T |
|
| Q |
707 |
tgaacatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaat |
756 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
11710596 |
tgaatatgaaagtgctcaagttatatgcatgggaaaaccattttaaaaat |
11710547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 146; Significance: 2e-76; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 118 - 755
Target Start/End: Original strand, 11944 - 12581
Alignment:
| Q |
118 |
ttatggacaatcgttttgtgccgccggagagagattttgatatctggattctttgcatttctcaaggtactcactctttcttcttgtcctatagttttga |
217 |
Q |
| |
|
|||||||||||| |||| |||| || |||||| |||||| || | || || ||||| ||| ||||||||||| |||| |||| | |||| || || ||| |
|
|
| T |
11944 |
ttatggacaatcattttatgccaccagagagaaattttggtaaccgggttgtttgcttttttcaaggtactcgctctatcttttactcctctacttctga |
12043 |
T |
|
| Q |
218 |
atgcctttatactggtggctgagggtaatcaaagtttcaaatttgaaggttactttttggccatctcacttttgtttatcaagattttagagtccctatc |
317 |
Q |
| |
|
| ||||||||| |||| |||||||||||| |||||||||||| ||||||||| | || ||||| ||||| || ||||| || || |||| |||||||| |
|
|
| T |
12044 |
acgcctttataatggttgctgagggtaatgaaagtttcaaatatgaaggttatatattagccatgtcactcttctttataaaaatcatagaatccctatc |
12143 |
T |
|
| Q |
318 |
tcaaaggcaatggtattttcgctcaagggttattggtatgaaagttaggtcattacttattgcatcaatttataagaaacaattgaaattatccaatgct |
417 |
Q |
| |
|
||||| ||||||||||| ||| | || || |||| ||||||||||| ||| ||||| |||| | |||| ||| ||| ||| | ||||||||| | |
|
|
| T |
12144 |
acaaagacaatggtatttccgcactagacttgttggaatgaaagttagatcacaacttactgcaaccatttctaaaaaaatattaaggttatccaataca |
12243 |
T |
|
| Q |
418 |
gctagattgattcactcgagcggtgagataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcaccagacatggacaa |
517 |
Q |
| |
|
|| |||||| ||||||| | ||||| |||||||| ||| ||| |||||||| |||||||| ||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
12244 |
gcgagattggttcactcaggtggtgaaataatgaattatatgacggtggatgcttatagaattggagaatttccattttggtttcaccaaacttggacaa |
12343 |
T |
|
| Q |
518 |
cagtcctccaactatcaattgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtgcttttgaa |
617 |
Q |
| |
|
|| |||||||| | | |||||||||||||| ||||| ||| | | |||| | |||||| | ||||| ||| |||||||||| | |||||||||| || |
|
|
| T |
12344 |
caatcctccaattgtgtattgcattagtaatccttttccgcacaattggactagcaacactagcatcaatggcggtgatagttctcaccgtgctttgcaa |
12443 |
T |
|
| Q |
618 |
tgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaacatgaaa |
717 |
Q |
| |
|
|||||||||| ||||||||||| | || | || ||||||||| || |||| ||||| || || || || | ||||||||||||||| ||| |||||| |
|
|
| T |
12444 |
tgctccactatcaaagttacaatacaaatttcagagtaaacttatgttggcacaagacgagagattaaaggttagttctgaagctctcacgaatatgaaa |
12543 |
T |
|
| Q |
718 |
gtgctaaagttatatgcatgggaaatgcattttaaaaa |
755 |
Q |
| |
|
||| | || ||||||||||||||| ||||||||||| |
|
|
| T |
12544 |
gtgttgaaactatatgcatgggaaaaccattttaaaaa |
12581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 123 - 742
Target Start/End: Original strand, 44810998 - 44811617
Alignment:
| Q |
123 |
gacaatcgttttgtgccgccggagagagattttgatatctggattctttgcatttctcaaggtactcactctttcttcttgtcctatagttttgaatgcc |
222 |
Q |
| |
|
|||||| |||||||| | | |||||| |||||||||||||||||||||||||| || |||||||| | || |||||| | || | || ||||| || |
|
|
| T |
44810998 |
gacaatagttttgtgtcactcgagagaaattttgatatctggattctttgcattgcttaaggtacttgcactgtcttctggaccattgcttctgaattcc |
44811097 |
T |
|
| Q |
223 |
tttatactggtggctgagggtaatcaaagtttcaaatttgaaggttactttttggccatctcacttttgtttatcaagattttagagtccctatctcaaa |
322 |
Q |
| |
|
|||||| | || | || ||| | | |||||||||| |||||||| | |||||||| ||||||| ||||| || ||| |||| || |||||||||| |
|
|
| T |
44811098 |
tttatattagtcgtcgaaggttttgagagtttcaaatatgaaggttttgtattggccatagcacttttctttataaaaattatagaatctctatctcaaa |
44811197 |
T |
|
| Q |
323 |
ggcaatggtattttcgctcaagggttattggtatgaaagttaggtcattacttattgcatcaatttataagaaacaattgaaattatccaatgctgctag |
422 |
Q |
| |
|
|||| |||||||| | ||| || | | ||| | ||||||||||| | || | |||| |||||||| || ||| ||| ||||||||| ||||||| |
|
|
| T |
44811198 |
ggcagtggtatttccactcgagactcgtcggtctcaaagttaggtctcttctaactgcagtgatttataaaaagcaactgaggttatccaattctgctag |
44811297 |
T |
|
| Q |
423 |
attgattcactcgagcggtgagataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcaccagacatggacaacagtc |
522 |
Q |
| |
|
||||| ||||| |||||||| |||||||| ||||||| |||||||| |||||||||||||||||||| | ||||||||||| |||||||| || | |
|
|
| T |
44811298 |
attgacgcactctagcggtgaaataatgaattatgtgactgtggatgcttatagaatcggagaatttccttactggtttcaccaaacatggactactagc |
44811397 |
T |
|
| Q |
523 |
ctccaactatcaattgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtgcttttgaatgctc |
622 |
Q |
| |
|
|||| |||| || | || ||||| ||||| ||||||| ||| | || |||||||| || |||| || |||||| | || || |||| ||||| | |
|
|
| T |
44811398 |
ttccagctatgtatctcgttggtaatacttttccgcgctattgggatagctacaattgcctccctggtagtcatagttatcactgtactttgtaatgcac |
44811497 |
T |
|
| Q |
623 |
cactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaacatgaaagtgct |
722 |
Q |
| |
|
|| | |||||||||||||| |||| || ||| |||||| |||| || |||||||| || ||||| |||| |||||| ||||| ||||| ||||| ||||| |
|
|
| T |
44811498 |
caattgcaaagttacaacacaagtttcaaagcaaacttatggtagcacaagatgagagattgaaggctacttctgaggctcttgtgaatatgaaggtgct |
44811597 |
T |
|
| Q |
723 |
aaagttatatgcatgggaaa |
742 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
44811598 |
gaagttatatgcatgggaaa |
44811617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 112 - 756
Target Start/End: Complemental strand, 9595 - 8951
Alignment:
| Q |
112 |
tcggtgttatggacaatcgttttgtgccgccggagagagattttgatatctggattctttgcatttctcaaggtactcactctttcttcttgtcctatag |
211 |
Q |
| |
|
||||| || |||||||| |||||||| || |||||||||||||||| | ||| ||||||| || ||||||||||| |||| ||||| ||||| || |
|
|
| T |
9595 |
tcggtcttttggacaataattttgtgctaccagagagagattttgataacaggactctttgctttgctcaaggtacttgctctaacttctggtcctctat |
9496 |
T |
|
| Q |
212 |
ttttgaatgcctttatactggtggctgagggtaatcaaagtttcaaatttgaaggttactttttggccatctcacttttgtttatcaagattttagagtc |
311 |
Q |
| |
|
|| |||||| |||||| ||| ||||| || ||| ||||||||| | | | ||||| | || || || ||||| || ||||| ||||| | | || |
|
|
| T |
9495 |
ttctgaatgaatttatatcggttgctgaaggcaatacaagtttcaattatcagggttatatattagcgatatcactcttctttataaagatcattggatc |
9396 |
T |
|
| Q |
312 |
cctatctcaaaggcaatggtattttcgctcaagggttattggtatgaaagttaggtcattacttattgcatcaatttataagaaacaattgaaattatcc |
411 |
Q |
| |
|
| |||| ||||| ||||||||||| || || || |||| ||||||||||| ||| |||||| |||||| |||||||| ||| ||| | || ||| |
|
|
| T |
9395 |
cgtatcacaaagacaatggtatttccggagtagacttgttgggatgaaagttagatcactacttaatgcatccatttataaaaaaatattaaggttgtcc |
9296 |
T |
|
| Q |
412 |
aatgctgctagattgattcactcgagcggtgagataatgaactatgtgaacgtggatgcctatagaatcggagaatttccgttttggtttcaccagacat |
511 |
Q |
| |
|
||| ||||||||||||||||||| || ||||||||||| || ||| | | ||| ||||| |||||||| |||||||||||| |||||||||||||||| | |
|
|
| T |
9295 |
aattctgctagattgattcactctagtggtgagataatcaattatataatcgtagatgcttatagaattggagaatttccggtttggtttcaccagactt |
9196 |
T |
|
| Q |
512 |
ggacaacagtcctccaactatcaattgcattagtaattctttttcgcgctactggattggcaacaattgcatcgttggtggtgatagttttgaccgtgct |
611 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||||||||| ||| | | |||| | |||| | ||||| |||| ||||| || | || |||| |
|
|
| T |
9195 |
ggacaacaagcctccaactgtgtattgcattagtaattcttttccgcacaattggactagcaattctagcatcattggcaatgataattctcactatgct |
9096 |
T |
|
| Q |
612 |
tttgaatgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaagctctggtgaac |
711 |
Q |
| |
|
|| ||||||| ||||| |||||| | || |||| || ||| ||||| ||||||| |||||||| || || || ||||||| ||| || | || | |
|
|
| T |
9095 |
ttgcaatgctcgcctagccaagttagagcacaagtttcaaaggcaacttatggtggcacaagatgagagattaaaggctagttttgagtcttttgttact |
8996 |
T |
|
| Q |
712 |
atgaaagtgctaaagttatatgcatgggaaatgcattttaaaaat |
756 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
8995 |
atgaaagtgttgaagttatatgcatgggaaacacattttaaaaat |
8951 |
T |
|
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