View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405_high_10 (Length: 503)
Name: NF4405_high_10
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 335
Target Start/End: Original strand, 7932468 - 7932802
Alignment:
| Q |
21 |
ggagctaacccaaactttactagagaggtgaatataaagaaaaattaaaatatatttgtatgaatcttatcttaacaatttt-gtagttgattgaactct |
119 |
Q |
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| T |
7932468 |
ggagctaacccaaactttactagagaggtgaatataaagaaaaaataaaatatatttttatgaatcttatcttaacaatttttgttgttgattgaactct |
7932567 |
T |
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| Q |
120 |
ttgtgtaattattatagacagaaattgtaaaaacaaagataaatttatctattaagtactacta----------------ttatttctactaatttttcg |
203 |
Q |
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| T |
7932568 |
ttgtgtaattattatagacagaaattgtaaaaacaaagataaatttatctattaagtactactattaattttgtctttttttatttctactaatttttcg |
7932667 |
T |
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| Q |
204 |
caaataagtttatgcgagctaactaaattagactaaatataaaattacaccaatttatt---nnnnnnnnnnnnngtggtagctaaggttaccccaaagt |
300 |
Q |
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| T |
7932668 |
caaataagtttatgcgagctaactaaattagattaaatataaaattacaccaatttattaaaaaaaaagaaaaaagtggtagctaaggttaccccaaagt |
7932767 |
T |
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| Q |
301 |
acttgactaccatggtcccactgtctatctgtcaa |
335 |
Q |
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| T |
7932768 |
acttgactaccatggtcccactgtctatctgtcaa |
7932802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 327 - 491
Target Start/End: Original strand, 7935219 - 7935385
Alignment:
| Q |
327 |
atctgtcaaacgttgtcactgtgtgttagtgtgcacaagaagccatggtttcgtg--gatgtaaatttgaggaatggagtaaaagaacgtttaagtgtga |
424 |
Q |
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| T |
7935219 |
atctgtcaaacgttgtcactgtgtgttagtgtgtacaagaagccatggtttcgtgtggatgtaaatttgaggaatggagtaaaagaacgtatgagtgtga |
7935318 |
T |
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| Q |
425 |
atgtttaattgctcttgaccaatataagcacaagacattaatccaaggagtaaacctggagtataat |
491 |
Q |
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| T |
7935319 |
atgtttaactgctcttgaccattataagcacaagacattaatccaaggagttaacatgtagtataat |
7935385 |
T |
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