View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405_high_11 (Length: 452)

Name: NF4405_high_11
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405_high_11
NF4405_high_11
[»] chr5 (1 HSPs)
chr5 (32-298)||(5598216-5598482)
[»] chr4 (7 HSPs)
chr4 (74-299)||(27301002-27301228)
chr4 (183-295)||(53559834-53559946)
chr4 (133-300)||(29695878-29696043)
chr4 (96-225)||(5746385-5746515)
chr4 (189-295)||(48316743-48316849)
chr4 (180-295)||(52632308-52632423)
chr4 (236-302)||(52606544-52606610)
[»] chr2 (3 HSPs)
chr2 (18-295)||(9367452-9367729)
chr2 (129-294)||(7293488-7293653)
chr2 (223-294)||(5436053-5436125)
[»] chr8 (2 HSPs)
chr8 (70-300)||(12949749-12949980)
chr8 (190-295)||(42034815-42034920)
[»] chr7 (4 HSPs)
chr7 (318-425)||(5971993-5972108)
chr7 (70-295)||(20949943-20950173)
chr7 (182-302)||(43988563-43988683)
chr7 (197-294)||(8232622-8232719)
[»] chr3 (1 HSPs)
chr3 (96-225)||(18676423-18676553)
[»] chr1 (2 HSPs)
chr1 (213-302)||(10462011-10462101)
chr1 (192-300)||(50010685-50010794)
[»] scaffold0114 (1 HSPs)
scaffold0114 (190-300)||(38104-38215)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 32 - 298
Target Start/End: Complemental strand, 5598482 - 5598216
Alignment:
Q  32 aaaagaaataaagaaaataattagcttaannnnnnnnnattagattgaacaagagagtgagggcttttc-tgtaattttggtccaaatagtgcttccata 130  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||    
T  5598482 aaaagaaataaagaaaataattagcttaatttttttt-attagattgaacaagagagtgagggcttttcatgtaattttggtccaaatagtgttttcata 5598384  T
Q  131 tgctttccgtccacaatagagtggaaatattttttgctgtggaacccagctatcagcatccttcctcccctttataaggtggttctaaacaatggaaaga 230  Q
    | |||||| |||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  5598383 tactttccatccacaatagagtggaaacattttttgctatgggacccagctatcagcatccttcctcccctttttaaggtggttacaaacaatggaaaga 5598284  T
Q  231 tttccaatccttcttctttccatccttcttcaatctttccttgcactttcacccaaaacaaacaaacc 298  Q
    || |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5598283 ttcccaatccttcttcttttcatcctttttcaatctttccttgcactttcacccaaaacaaacaaacc 5598216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 5e-94; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 74 - 299
Target Start/End: Complemental strand, 27301228 - 27301002
Alignment:
Q  74 gattgaacaagagagtgagggcttttc-tgtaattttggtccaaatagtgcttccatatgctttccgtccacaatagagtggaaatattttttgctgtgg 172  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27301228 gattgaacaagagagtgagggcttttcatgtaattttggtctaaatagtgcttccatatgctttccgtccacaatagagcggaaacattttttgctgtgg 27301129  T
Q  173 aacccagctatcagcatccttcctcccctttataaggtggttctaaacaatggaaagatttccaatccttcttctttccatccttcttcaatctttcctt 272  Q
     | |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  27301128 gatccagctatcagcatccttcctcccctttttaaagtggttccaaacaatggaaagattctcaatccttcttctttccatccttcttcaatctttcctt 27301029  T
Q  273 gcactttcacccaaaacaaacaaaccc 299  Q
    | |||||||||||||||||||||||||    
T  27301028 gtactttcacccaaaacaaacaaaccc 27301002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 53559946 - 53559834
Alignment:
Q  183 tcagcatccttcctcccctttataaggtggttctaaacaatggaaagatttccaatccttcttctttccatccttcttcaatctttccttgcactttcac 282  Q
    ||||||||||| ||||| ||| ||||||||||| |||||||||||||||| |||||||||| |||||  ||||||||||||||||||||| |||||| ||    
T  53559946 tcagcatcctttctcccttttttaaggtggttccaaacaatggaaagattcccaatccttcctctttttatccttcttcaatctttcctttcacttttac 53559847  T
Q  283 ccaaaacaaacaa 295  Q
    |||||||||||||    
T  53559846 ccaaaacaaacaa 53559834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 133 - 300
Target Start/End: Original strand, 29695878 - 29696043
Alignment:
Q  133 ctttccgtccacaatagagtggaaatattttttgctgtggaacccagctatcagcatccttcctcccctttataaggtggttctaaacaatggaaagatt 232  Q
    |||||||| |||||||||| ||||  |||||||| |||||| |||||||||| ||||||||||| || ||| | ||||||||| |||| ||||||||| |    
T  29695878 ctttccgttcacaatagagcggaatcattttttgttgtgga-cccagctatctgcatccttcctgcctttt-tgaggtggttccaaaccatggaaagaat 29695975  T
Q  233 tccaatccttcttctttccatccttcttcaatctttccttgcactttcacccaaaacaaacaaaccct 300  Q
      |||||||||| ||||| ||| ||||||||||||||||| ||||||||| |||||||||||| ||||    
T  29695976 ctcaatccttctactttctatcattcttcaatctttccttacactttcactcaaaacaaacaagccct 29696043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 5746385 - 5746515
Alignment:
Q  96 ttttctgtaattttggtccaaatagtgctt-ccatatgctttccgtccacaatagagtggaaatattttttgctgtggaacccagctatcagcatccttc 194  Q
    |||| |||||||||| || ||| ||||||| || ||  |||||||| |||||||||||||||| |||||||| ||||  | || |||||||||||||||     
T  5746385 ttttttgtaattttgttcaaaacagtgctttccctagactttccgtgcacaatagagtggaaacattttttggtgtgcgatccggctatcagcatccttt 5746484  T
Q  195 ctcccctttataaggtggttctaaacaatgg 225  Q
    ||||| ||| ||||||||||| |||| ||||    
T  5746485 ctcccatttttaaggtggttccaaactatgg 5746515  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 48316743 - 48316849
Alignment:
Q  189 tccttcctcccctttataaggtggttctaaacaatggaaagatttccaatccttcttctttccatccttcttcaatctttccttgcactttcacccaaaa 288  Q
    ||||||||| ||||| |||||| |||  |||| ||||||||||| |  |||||||| ||||| |||||| ||||||||||||||  | | ||| ||||||    
T  48316743 tccttcctcacctttttaaggttgtttcaaactatggaaagattgcacatccttctactttctatccttattcaatctttccttcaattatcatccaaaa 48316842  T
Q  289 caaacaa 295  Q
    |||||||    
T  48316843 caaacaa 48316849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 52632423 - 52632308
Alignment:
Q  180 ctatcagcatccttcctcccctttataaggtggttctaaacaatggaaagatttccaatccttcttctttccatccttcttcaatctttccttgcacttt 279  Q
    ||||||| |||| ||||| || || |||| | |||| |||| ||||||||||| |  || ||||| ||||| ||||||  |||||||||||||  ||| |    
T  52632423 ctatcagtatccctcctcaccattttaagtttgttccaaactatggaaagattgctcattcttctactttctatccttactcaatctttccttcaactat 52632324  T
Q  280 cacccaaaacaaacaa 295  Q
    ||||||||||||||||    
T  52632323 cacccaaaacaaacaa 52632308  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 302
Target Start/End: Complemental strand, 52606610 - 52606544
Alignment:
Q  236 aatccttcttctttccatccttcttcaatctttccttgcactttcacccaaaacaaacaaaccctta 302  Q
    ||||||| | |||||  |||| ||||||||||||||   |||||||||||||||||||| |||||||    
T  52606610 aatccttatactttctgtcctccttcaatctttcctactactttcacccaaaacaaacagaccctta 52606544  T

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Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 9367729 - 9367452
Alignment:
Q  18 caccaacatccgagaaaagaaataaagaaaataattagcttaannnnnnnnnattagattgaacaagagagtgagggcttttctg-taattttggtccaa 116  Q
    |||||||||||||||||||||||||| ||||  ||||||||||         |||||||| ||||| ||||||| |||||||  | || ||||| || ||    
T  9367729 caccaacatccgagaaaagaaataaaaaaaa--attagcttaaattcttttgattagatttaacaatagagtgatggctttttaggtagttttgttcaaa 9367632  T
Q  117 atagtgc-ttccatatgctttccgtccacaatagagtggaaatattttttgctgtggaacccagctatcagcatccttcctcccctttataaggtggttc 215  Q
    ||||||| |||||||  |||||||| |||||||||| ||||| |||||||  || || ||||  ||||||||||| || ||||| |||  ||| ||||||    
T  9367631 atagtgccttccatagactttccgtgcacaatagaggggaaacatttttttgtgcgggacccgactatcagcatcttttctccctttttaaagatggttc 9367532  T
Q  216 taaacaatggaaagatttccaatccttcttctttccatccttcttcaatctttccttgcactttcacccaaaacaaacaa 295  Q
     |||||||||||||||| |||||||||| |||||| ||||||| |||||||||| || ||||||||||||||||||||||    
T  9367531 caaacaatggaaagattcccaatccttcctctttctatccttcctcaatctttcttttcactttcacccaaaacaaacaa 9367452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 294
Target Start/End: Original strand, 7293488 - 7293653
Alignment:
Q  129 tatgctttccgtccacaatagagtggaaatattttttgctgtggaacccagctatcagcatccttcctccc-ctttataaggtggttctaaacaatggaa 227  Q
    |||||||||||||  ||||||||  |||| ||||| || ||||| ||||| | ||||  ||| |||||||| |||| ||||||| |||||||| | ||||    
T  7293488 tatgctttccgtcttcaatagagcagaaacattttatg-tgtgggacccaaccatcattatcattcctccctctttctaaggtgattctaaactaaggaa 7293586  T
Q  228 agatttccaatccttcttctttccatccttcttcaatctttccttgcactttcacccaaaacaaaca 294  Q
    ||||| | ||||||||| |||||  |||||| |||||||||||||    | ||||||||||||||||    
T  7293587 agattgctaatccttctactttctctccttcatcaatctttccttatgttgtcacccaaaacaaaca 7293653  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 5436053 - 5436125
Alignment:
Q  223 tggaaagatttccaatccttcttctttccatcctt-cttcaatctttccttgcactttcacccaaaacaaaca 294  Q
    |||||||||| | ||||||||  ||||| |||||| | |||||||||||||  ||| ||||||||||||||||    
T  5436053 tggaaagattgcaaatccttccactttctatcctttcctcaatctttccttcaactatcacccaaaacaaaca 5436125  T

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Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 70 - 300
Target Start/End: Original strand, 12949749 - 12949980
Alignment:
Q  70 attagattgaacaagagagtgagggcttttc-tgtaattttggtccaaatagtg-cttccatatgctttccgtccacaatagagtggaaatattttttgc 167  Q
    |||||||||||||||||||||| || ||||  |||||||||| || |||||||| |||||  |||||||||||||| ||||||||||||| ||||||||     
T  12949749 attagattgaacaagagagtgatggttttttatgtaattttgctcaaaatagtgtcttcccaatgctttccgtccataatagagtggaaacattttttg- 12949847  T
Q  168 tgtggaacccagctatcagcatccttcctcccctttataaggtggttctaaacaatggaaagatttccaatccttcttctttccatccttcttcaatctt 267  Q
    | ||   |||||||||||| |||| |||||||| || ||| || |||| |||| ||||||| | |  || ||||||| ||||| ||||| | ||||||||    
T  12949848 tatgaggcccagctatcagaatccctcctccccattttaaagttgttccaaactatggaaataatctcattccttctactttctatcctacctcaatctt 12949947  T
Q  268 tccttgcactttcacccaaaacaaacaaaccct 300  Q
    ||||| |||||||||||||||||||||| ||||    
T  12949948 tcctttcactttcacccaaaacaaacaagccct 12949980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 295
Target Start/End: Complemental strand, 42034920 - 42034815
Alignment:
Q  190 ccttcctcccctttataaggtggttctaaacaatggaaagatttccaatccttcttctttccatccttcttcaatctttccttgcactttcacccaaaac 289  Q
    ||||||| |||||| |||| |||||| |||| | | |||||||  |||||| ||| ||||| ||||||||||||||||||||   |||||||||||||||    
T  42034920 ccttccttccctttttaagatggttccaaactaagaaaagattggcaatccctctactttctatccttcttcaatctttcctactactttcacccaaaac 42034821  T
Q  290 aaacaa 295  Q
    ||||||    
T  42034820 aaacaa 42034815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 318 - 425
Target Start/End: Original strand, 5971993 - 5972108
Alignment:
Q  318 ccattgtttcttgcacacatggtttgtatgtcttattctctctct--------ttcttttgcacttctttgatttgttgccttcactgtttcataagaac 409  Q
    ||||||||||||||||||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||||||||| |||||||||    
T  5971993 ccattgtttcttgcacacatggtttgtatgtcttactctctctctctctttttttcttttgcacttctttgatttgttgccttcactgttacataagaac 5972092  T
Q  410 tccatgttgtttataa 425  Q
    ||||||||||||||||    
T  5972093 tccatgttgtttataa 5972108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 70 - 295
Target Start/End: Original strand, 20949943 - 20950173
Alignment:
Q  70 attagattgaacaagagagtgagggcttttct---gtaattttggtccaaatagtg-cttccatatgctttccgtccaca--atagagtggaaatatttt 163  Q
    ||||||||||||||||||||||||| |||| |   ||||||||| || |||||||| |||||  |||||||| ||| | |  |||||||||||| |||||    
T  20949943 attagattgaacaagagagtgagggttttttttatgtaattttgctcaaaatagtgtcttccccatgctttctgtctatataatagagtggaaacatttt 20950042  T
Q  164 ttgctgtggaacccagctatcagcatccttcctcccctttataaggtggttctaaacaatggaaagatttccaatccttcttctttccatccttcttcaa 263  Q
    ||  |||||  ||||||||| || |||| ||||||||||| ||| || |||| |||| ||||||||| |  || ||||||| ||||| ||||| | ||||    
T  20950043 tta-tgtggggcccagctattagaatccctcctcccctttttaaagttgttccaaactatggaaagaatctcattccttctactttctatcctacctcaa 20950141  T
Q  264 tctttccttgcactttcacccaaaacaaacaa 295  Q
    ||||||||| ||||||||||||||||||||||    
T  20950142 tctttcctttcactttcacccaaaacaaacaa 20950173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 43988563 - 43988683
Alignment:
Q  182 atcagcatccttcctcccctttataaggtggttctaaacaatggaaagatttccaatccttcttctttccatccttcttcaatctttccttgcactttca 281  Q
    ||||| |||||||||| ||||| |||||| |||| |||| ||||||||||| |  |||||||| ||||| ||||||  |||||||||||||  ||| |||    
T  43988563 atcagtatccttcctcacctttttaaggttgttccaaactatggaaagattgctcatccttctactttctatccttactcaatctttccttcaactatca 43988662  T
Q  282 cccaaaacaaacaaaccctta 302  Q
    |||||||||||||| ||||||    
T  43988663 cccaaaacaaacaagccctta 43988683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 8232622 - 8232719
Alignment:
Q  197 cccctttataaggtggttctaaacaatggaaagatttccaatccttcttctttccatccttcttcaatctttccttgcactttcacccaaaacaaaca 294  Q
    ||||||| || |||||||| |||| | ||||||| |   |||||| || ||||| ||||||| |||||||||||||  ||||||||||||||||||||    
T  8232622 cccctttttatggtggttccaaactaaggaaagaatgttaatcctactactttctatccttcctcaatctttccttctactttcacccaaaacaaaca 8232719  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 18676423 - 18676553
Alignment:
Q  96 ttttctgtaattttggtccaaatagtgctt-ccatatgctttccgtccacaatagagtggaaatattttttgctgtggaacccagctatcagcatccttc 194  Q
    |||| |||||||||| || ||| ||||||| || ||  |||||||| |||||||||||||||| |||||||| ||||  | || |||||||||||||||     
T  18676423 ttttttgtaattttgttcaaaacagtgctttccctagactttccgtgcacaatagagtggaaacattttttggtgtgcgatccggctatcagcatccttt 18676522  T
Q  195 ctcccctttataaggtggttctaaacaatgg 225  Q
    ||||| ||| ||||||||||| |||| ||||    
T  18676523 ctcccatttttaaggtggttccaaactatgg 18676553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 302
Target Start/End: Complemental strand, 10462101 - 10462011
Alignment:
Q  213 ttctaaacaatggaaagatttccaatccttcttctttccatcctt-cttcaatctttccttgcactttcacccaaaacaaacaaaccctta 302  Q
    |||||||| |||||||||||  |||||||||  ||||| |||||| | |||||||||||||  ||| ||||||||||||||||||||||||    
T  10462101 ttctaaactatggaaagattgtcaatccttccactttctatcctttcctcaatctttccttcaactatcacccaaaacaaacaaaccctta 10462011  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 50010794 - 50010685
Alignment:
Q  192 ttcctccc-ctttataaggtggttctaaacaatggaaagatttccaatccttcttctttccatccttcttcaatctttccttgcactttcacccaaaaca 290  Q
    |||||||| |||| ||||||| ||  |||| | ||||||||| | ||||||||| |||||  |||||| |||||||||||||   || ||||||||||||    
T  50010794 ttcctccctctttctaaggtgatttcaaactaaggaaagattgctaatccttctactttctctccttcatcaatctttccttatgctgtcacccaaaaca 50010695  T
Q  291 aacaaaccct 300  Q
    |||| |||||    
T  50010694 aacacaccct 50010685  T

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Target: scaffold0114 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 300
Target Start/End: Original strand, 38104 - 38215
Alignment:
Q  190 ccttcctccc-ctttataaggtggttctaaacaatggaaagatttccaatccttcttctttccatccttcttcaatctttccttgcactttcacccaaaa 288  Q
    |||||||||| |||| |||||| |||| |||||| ||||||| |   |||| | || ||||| ||||||||||||||||||||   ||||||||||||||    
T  38104 ccttcctccctctttctaaggtagttccaaacaaaggaaagaataataatcttactactttctatccttcttcaatctttcctactactttcacccaaaa 38203  T
Q  289 caaacaaaccct 300  Q
     ||||| |||||    
T  38204 taaacagaccct 38215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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