View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405_high_16 (Length: 389)
Name: NF4405_high_16
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 30000571 - 30000215
Alignment:
| Q |
17 |
atgaacaacacaattttattagctcgttcatggatcatttcaatgacaaaccatctcaaagtaaaattttgaactcaattgcggcctaacaagaattggt |
116 |
Q |
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| T |
30000571 |
atgaacaagacaattttatcagctcgttcatggatcatttcaatgacaaaacatctcaaagtaaaattttgaactcaattgcggcctaacaagaattggt |
30000472 |
T |
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| Q |
117 |
aatgggtcgaaaaacacgacctcttcccacaattttgcaaggacattttctagtacgcttgatgaattgtgaacaacaacactaatatacatagttatgg |
216 |
Q |
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| T |
30000471 |
aataggtcgaaaaacacgacctcttcccacaattttgcaaggacgttttctggtacgcttgatgaattgtgaacaacaacactaatatacatagttatgg |
30000372 |
T |
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| Q |
217 |
aagaagtaatgattgctaaaagaggaattacaaaatattccctaacaaatagctacaatgaaggcaaagacagaaggagggatcttttcggatgcatgaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30000371 |
aagaagtaatgattgctaaaagaggaattacaaaagattccctaacaaatagctacaatgaaggcaaagacagaaggagggatcttttcggatgcatgaa |
30000272 |
T |
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| Q |
317 |
tcttcaatttaatcaatatatctcaccaaagaaagtcaaaaccatatgcatgtataa |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30000271 |
tcttcaatttaatcaatatatctcaccaaagaaagtcaaaaccatatgcatgtataa |
30000215 |
T |
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