View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405_high_21 (Length: 357)

Name: NF4405_high_21
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405_high_21
NF4405_high_21
[»] chr5 (2 HSPs)
chr5 (78-222)||(35242401-35242550)
chr5 (265-339)||(35242553-35242627)
[»] chr8 (2 HSPs)
chr8 (78-222)||(11009806-11009955)
chr8 (49-86)||(11009961-11009998)
[»] chr6 (1 HSPs)
chr6 (227-339)||(21859659-21859771)
[»] scaffold0060 (1 HSPs)
scaffold0060 (227-339)||(58453-58565)
[»] chr7 (1 HSPs)
chr7 (17-55)||(32855684-32855722)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 35242401 - 35242550
Alignment:
Q  78 acaaatcctaacttatgaaaacccccggaagcatttgccaaagacccatacatttggtaaggtcgtatccctgcttctcgattacgatcaatttca---- 173  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  35242401 acaaatcctaccttatgaaaattcccggaagcatttgccaaagacccatacatttggtaaggtcgtatccctgcttctcgattacgatcaatttcagcta 35242500  T
Q  174 -gtcggcctcactcatttttctgtacgcgggcaacattccacaaagagta 222  Q
     |||||||||||||  |||||||||||  |||||||||||||||||||||    
T  35242501 tgtcggcctcactctattttctgtacgtcggcaacattccacaaagagta 35242550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 35242553 - 35242627
Alignment:
Q  265 acctccttgctcaaacagaggattcgaagcttgtgatcttccatccatgtatatgagtaccgacattttatatca 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  35242553 acctccttgctcaaacagaggattcgaagcttgtgatcttccatccatgtatctgagtaccaacattttatatca 35242627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 11009955 - 11009806
Alignment:
Q  78 acaaatcctaacttatgaaaacccccggaagcatttgccaaagacccatacatttggtaaggtcgtatccctgcttctcgattacgatcaatttcag--- 174  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |||| |||| ||||||||||       
T  11009955 acaaatcctaccttatgaaaacccccggaagcatttgccaaagactcatacatttggtaaggacttatccctgcttttcgactacgctcaatttcagcta 11009856  T
Q  175 --tcggcctcactcatttttctgtacgcgggcaacattccacaaagagta 222  Q
      |||||||| ||||||||||||||||| |||||||||||||||||||||    
T  11009855 tatcggcctcgctcatttttctgtacgctggcaacattccacaaagagta 11009806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 11009998 - 11009961
Alignment:
Q  49 tgatttgcgttgcctcgcaacctggttgtacaaatcct 86  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  11009998 tgatttgtgttgcctcgcaacctggttgtacaaatcct 11009961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 227 - 339
Target Start/End: Complemental strand, 21859771 - 21859659
Alignment:
Q  227 atttcacatttgcgattacttacactagaaattctaggacctccttgctcaaacagaggattcgaagcttgtgatcttccatccatgtatatgagtaccg 326  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||     
T  21859771 atttcacatttgcgattacttacactgaaaattctaggacctccttgctcaaacagaggattcgaagcttgtgatcttccatccatgtatgtgaatacca 21859672  T
Q  327 acattttatatca 339  Q
    |||||||||||||    
T  21859671 acattttatatca 21859659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 58453 - 58565
Alignment:
Q  227 atttcacatttgcgattacttacactagaaattctaggacctccttgctcaaacagaggattcgaagcttgtgatcttccatccatgtatatgagtaccg 326  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||     
T  58453 atttcacatttgcgattacttacactggaaattctaggacctccttgctcaaacagaggattcgaagcttgtgatcttccatccatgtatccgaatacca 58552  T
Q  327 acattttatatca 339  Q
    |||||||| ||||    
T  58553 acattttaaatca 58565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 32855684 - 32855722
Alignment:
Q  17 gtggaatccggggcgtgtctggtgttgaattgtgatttg 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32855684 gtggaatccggggcgtgtctggtgttgaattgtgatttg 32855722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University