View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405_high_22 (Length: 356)
Name: NF4405_high_22
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 161 - 338
Target Start/End: Complemental strand, 17896903 - 17896726
Alignment:
| Q |
161 |
cttgattattttatctgagagaaaagaggattgggtctttttctctannnnnnnctggcttttgaattagttaaaatatatataattcatttatttcttg |
260 |
Q |
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| T |
17896903 |
cttgattattttatctgagagaaaagaggattgggtctttttctctatttttttctggcttttgaattagttaaaatatatataattcatttttttcttg |
17896804 |
T |
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| Q |
261 |
ttggtgaccggaatgtgccggtgggggattgaacggaagaaaatgtgacggcggaggaagggaggaccttgtcggaga |
338 |
Q |
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| T |
17896803 |
ttggtgaccggaatgtgccggtgggggattgaacggaagaaaatgtgtcggcggaggaagggaggaccgggtcggaga |
17896726 |
T |
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