View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405_high_25 (Length: 334)

Name: NF4405_high_25
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405_high_25
NF4405_high_25
[»] chr2 (5 HSPs)
chr2 (122-238)||(144580-144694)
chr2 (122-238)||(32623829-32623944)
chr2 (119-238)||(11195820-11195938)
chr2 (208-238)||(17646530-17646560)
chr2 (205-238)||(18634433-18634466)
[»] chr7 (5 HSPs)
chr7 (122-238)||(26855183-26855297)
chr7 (122-238)||(4106956-4107072)
chr7 (146-238)||(35213102-35213193)
chr7 (162-235)||(36031554-36031625)
chr7 (146-238)||(38489058-38489149)
[»] chr4 (6 HSPs)
chr4 (122-238)||(20543554-20543669)
chr4 (32-120)||(25102506-25102595)
chr4 (146-238)||(43517310-43517401)
chr4 (174-238)||(27299634-27299697)
chr4 (248-334)||(25102434-25102519)
chr4 (178-238)||(3098500-3098558)
[»] chr5 (6 HSPs)
chr5 (122-238)||(5100193-5100307)
chr5 (122-238)||(35100975-35101090)
chr5 (122-238)||(21368472-21368586)
chr5 (171-238)||(979693-979759)
chr5 (178-238)||(34373235-34373293)
chr5 (206-238)||(16906777-16906809)
[»] chr6 (2 HSPs)
chr6 (122-238)||(14687563-14687677)
chr6 (165-238)||(14320720-14320792)
[»] chr1 (8 HSPs)
chr1 (122-238)||(52028153-52028268)
chr1 (131-238)||(33150463-33150569)
chr1 (129-238)||(34352493-34352601)
chr1 (168-238)||(5808230-5808299)
chr1 (168-238)||(13868417-13868486)
chr1 (143-238)||(45794900-45794994)
chr1 (152-238)||(26510952-26511036)
chr1 (206-238)||(50729510-50729542)
[»] chr8 (2 HSPs)
chr8 (143-238)||(9510264-9510357)
chr8 (171-238)||(6244617-6244683)
[»] chr3 (2 HSPs)
chr3 (171-238)||(40514311-40514377)
chr3 (146-200)||(20857462-20857516)


Alignment Details
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 144580 - 144694
Alignment:
Q  122 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 221  Q
    |||||||| |||||||||| ||| |||||||||||||| ||| || |||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  144580 gaccattgttttgactctattttgtatgtttgactgtttttaggggtgacacttttagtacatcttgtacttagatgttca--ctgccgttgttaatata 144677  T
Q  222 tttcatttttatgtctt 238  Q
    || ||||||||||||||    
T  144678 ttccatttttatgtctt 144694  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 32623944 - 32623829
Alignment:
Q  122 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 221  Q
    |||| |||||||||||||| ||| |||||||||||||||| | || || ||||||||||||||||||||||||| ||||    |||||||||||||||||    
T  32623944 gacctttgctttgactctactttgtatgtttgactgttatcaggggtggcacttttagtacatcttgtacttaggtgtt-ttactgccgttgttaatata 32623846  T
Q  222 tttcatttttatgtctt 238  Q
    || ||||||||||||||    
T  32623845 ttccatttttatgtctt 32623829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 11195938 - 11195820
Alignment:
Q  119 attgaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaat 218  Q
    ||||||| ||||||||||| || |||  |||| ||||| |||||| || |||||||||||||||||||| ||||||| ||||  | || |||||||||||    
T  11195938 attgacctttgctttgactttactttgcatgtctgactattattaggggtgacacttttagtacatcttatacttaggtgtt-tccctaccgttgttaat 11195840  T
Q  219 atatttcatttttatgtctt 238  Q
    ||||| ||||||||||||||    
T  11195839 atattccatttttatgtctt 11195820  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 238
Target Start/End: Complemental strand, 17646560 - 17646530
Alignment:
Q  208 ccgttgttaatatatttcatttttatgtctt 238  Q
    |||||||||||||||||||||||||||||||    
T  17646560 ccgttgttaatatatttcatttttatgtctt 17646530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 18634466 - 18634433
Alignment:
Q  205 ctgccgttgttaatatatttcatttttatgtctt 238  Q
    ||||||||||||||||||| ||||||||||||||    
T  18634466 ctgccgttgttaatatattccatttttatgtctt 18634433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 26855297 - 26855183
Alignment:
Q  122 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 221  Q
    |||||||| |||||||||| ||| |||||||||||||| ||| || |||||||||||||||||||||||||||| ||||||  |||||| ||||||||||    
T  26855297 gaccattgttttgactctattttgtatgtttgactgtttttaggggtgacacttttagtacatcttgtacttaggtgttca--ctgccgctgttaatata 26855200  T
Q  222 tttcatttttatgtctt 238  Q
    || ||||||||||||||    
T  26855199 ttccatttttatgtctt 26855183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 4106956 - 4107072
Alignment:
Q  122 gaccattgctttgactctaatttatatgtttgactgttattaagga-tgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatat 220  Q
    |||| ||| ||||||| || ||| |||||||||||||||||| ||  ||||| |||||||||||||| ||||||||||||  | ||||||||||||||||    
T  4106956 gacctttgttttgactttactttgtatgtttgactgttattagggggtgacatttttagtacatcttatacttagatgttt-cactgccgttgttaatat 4107054  T
Q  221 atttcatttttatgtctt 238  Q
    |||  |||||||||||||    
T  4107055 attcaatttttatgtctt 4107072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 35213193 - 35213102
Alignment:
Q  146 tatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    ||||||||||| ||  || || || ||||||||||||||||||||||||| ||||  | ||||||||||||||||||  ||||||||||||||    
T  35213193 tatgtttgactatttctaggggtggcacttttagtacatcttgtacttaggtgtt-tcactgccgttgttaatatatcccatttttatgtctt 35213102  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 36031625 - 36031554
Alignment:
Q  162 taaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgt 235  Q
    ||||| ||||||||||| |||||||||||||||| ||||  | ||||||||||||||||| |||||||||||||    
T  36031625 taagggtgacacttttaatacatcttgtacttaggtgtt-tcactgccgttgttaatata-ttcatttttatgt 36031554  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 38489058 - 38489149
Alignment:
Q  146 tatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    ||||||||||| ||  || |||||||||||||| ||||||||||| | || ||||  | |||||||||||| |||||  ||||||||||||||    
T  38489058 tatgtttgactatttctagggatgacacttttaatacatcttgtattaaggtgtt-tcactgccgttgttattatataccatttttatgtctt 38489149  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 20543669 - 20543554
Alignment:
Q  122 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 221  Q
    |||| |||||||||||||| ||| |||||||||||||||||| || || ||||||||||||||||||||||||| ||||  | |||||||||||||||||    
T  20543669 gacctttgctttgactctactttgtatgtttgactgttattaggggtggcacttttagtacatcttgtacttaggtgtt-tcactgccgttgttaatata 20543571  T
Q  222 tttcatttttatgtctt 238  Q
    || ||||||||||||||    
T  20543570 ttccatttttatgtctt 20543554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 25102595 - 25102506
Alignment:
Q  32 tcctcgcattttaacgg-tttttaactttagtctctcgactcttttctttggcattgattcttatactttataaaaatattgacattaat 120  Q
    |||||||||||||||   ||||||||||||||||    |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25102595 tcctcgcattttaaccaatttttaactttagtctaaacactcttttctttagcattgattcttatactttataaaaatattgacattaat 25102506  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 43517310 - 43517401
Alignment:
Q  146 tatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    ||||||||||| ||  || || |||||||||||||||||||||||||||| ||||  | |||| |||||||||||||| ||||||||||||||    
T  43517310 tatgtttgactatttctaggggtgacacttttagtacatcttgtacttaggtgtt-tcactgctgttgttaatatattccatttttatgtctt 43517401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 27299697 - 27299634
Alignment:
Q  174 ttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    |||||||||||||||||||||||||  | | ||| ||| ||||||||||| ||||||||||||||    
T  27299697 ttttagtacatcttgtacttagatg-actcactgtcgtagttaatatattccatttttatgtctt 27299634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 334
Target Start/End: Complemental strand, 25102519 - 25102434
Alignment:
Q  248 atattgacattaatccttctcttagctttcccttnnnnnnnnnnnnctagctgtgtatcatatgggctagattattctacgtcacgt 334  Q
    |||||||||||||||||||| |||||||||||||            ||| | ||||||||||||||||| |||||||||||||||||    
T  25102519 atattgacattaatccttctgttagctttcccttaaataataaaaactaacggtgtatcatatgggcta-attattctacgtcacgt 25102434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 3098558 - 3098500
Alignment:
Q  178 agtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    ||||||||||||| |||| || ||||   ||| ||||||||||||||||||||||||||||    
T  3098558 agtacatcttgtatttaggtggtcacc--gcctttgttaatatatttcatttttatgtctt 3098500  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 5100193 - 5100307
Alignment:
Q  122 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 221  Q
    ||||||||||||||||||  ||| |||||||||||||| ||| || |||||| |||||||||||||||||||||  |||||  |||||||||||||||||    
T  5100193 gaccattgctttgactcttttttgtatgtttgactgtttttaggggtgacacctttagtacatcttgtacttaggcgttca--ctgccgttgttaatata 5100290  T
Q  222 tttcatttttatgtctt 238  Q
    || ||||||||||||||    
T  5100291 ttccatttttatgtctt 5100307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 35101090 - 35100975
Alignment:
Q  122 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 221  Q
    |||| |||||||||||||| ||| ||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||  | | |||||||||||||||    
T  35101090 gacctttgctttgactctactttgtatgtttaactgttattagggatggcacttttagtacatcttgtacttaggtgtt-tcaccgccgttgttaatata 35100992  T
Q  222 tttcatttttatgtctt 238  Q
    || ||||||||||||||    
T  35100991 ttccatttttatgtctt 35100975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 21368472 - 21368586
Alignment:
Q  122 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 221  Q
    |||||||| |||||||||| ||| ||| |||||||||||||| ||  | ||||||||||||||||||||||||| ||||  | |||||||||||||||||    
T  21368472 gaccattgttttgactctattttgtatatttgactgttattaggggcggcacttttagtacatcttgtacttaggtgtt--cgctgccgttgttaatata 21368569  T
Q  222 tttcatttttatgtctt 238  Q
    || ||||||||||||||    
T  21368570 ttccatttttatgtctt 21368586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 979693 - 979759
Alignment:
Q  171 cacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    ||||||||||||||||||||||||||||||  | ||||| ||||||||||||| ||||||||||||||    
T  979693 cacttttagtacatcttgtacttagatgtt-tcactgccattgttaatatattccatttttatgtctt 979759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 34373235 - 34373293
Alignment:
Q  178 agtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    ||||||||||||||| || || ||||   ||| ||||||||||||||||||||||||||||    
T  34373235 agtacatcttgtactaaggtggtcacc--gcctttgttaatatatttcatttttatgtctt 34373293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 16906809 - 16906777
Alignment:
Q  206 tgccgttgttaatatatttcatttttatgtctt 238  Q
    |||||||||||||||||| ||||||||||||||    
T  16906809 tgccgttgttaatatattccatttttatgtctt 16906777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 14687563 - 14687677
Alignment:
Q  122 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 221  Q
    ||||||||||||||||||  ||| |||||||||||||| ||| || |||||| |||||||||||||||||||||   ||||  |||||||||||||||||    
T  14687563 gaccattgctttgactcttttttgtatgtttgactgtttttaggggtgacacctttagtacatcttgtacttaggcattca--ctgccgttgttaatata 14687660  T
Q  222 tttcatttttatgtctt 238  Q
    || ||||||||||||||    
T  14687661 ttccatttttatgtctt 14687677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 14320720 - 14320792
Alignment:
Q  165 ggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    ||||| ||||||||||||||||||||||||| ||||  | ||||||||||||||||||  ||||||||||||||    
T  14320720 ggatggcacttttagtacatcttgtacttaggtgtt-tcactgccgttgttaatatatcccatttttatgtctt 14320792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 52028268 - 52028153
Alignment:
Q  122 gaccattgctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatata 221  Q
    |||| |||||||||||||||||| |||||||||||||||||| || || |||||||| |||||||| ||||||| ||||  | |||| || |||||||||    
T  52028268 gacctttgctttgactctaatttgtatgtttgactgttattaggggtggcacttttaatacatcttatacttaggtgtt-tcactgctgtcgttaatata 52028170  T
Q  222 tttcatttttatgtctt 238  Q
    || ||||||||||||||    
T  52028169 ttccatttttatgtctt 52028153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 33150569 - 33150463
Alignment:
Q  131 tttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttt 230  Q
    |||||||||| ||| |||||||||||||||||| || || |||||||| ||||| |||||||||| ||||  | ||||||||||||||||||| ||||||    
T  33150569 tttgactctactttgtatgtttgactgttattaggggtggcacttttactacattttgtacttaggtgtt-tcactgccgttgttaatatattccatttt 33150471  T
Q  231 tatgtctt 238  Q
    ||||||||    
T  33150470 tatgtctt 33150463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 34352601 - 34352493
Alignment:
Q  129 gctttgactctaatttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatt 228  Q
    |||||||||||   || ||||| |||||||| ||| || |||||||||||||||||||||||||||| ||||  | ||||||||||| ||||||| ||||    
T  34352601 gctttgactcttcattgtatgtctgactgtttttaggggtgacacttttagtacatcttgtacttaggtgtt-tcactgccgttgttgatatattccatt 34352503  T
Q  229 tttatgtctt 238  Q
    ||||||||||    
T  34352502 tttatgtctt 34352493  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 5808299 - 5808230
Alignment:
Q  168 tgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    |||||||||||||||||||||||||||| ||  | | ||||||||||||||||||| ||||||||||||||    
T  5808299 tgacacttttagtacatcttgtacttaggtga-ctcactgccgttgttaatatattccatttttatgtctt 5808230  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 13868417 - 13868486
Alignment:
Q  168 tgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    ||||||||||| |||||||||||||||| ||||  | |||||||||||||||||| |||||||||||||||    
T  13868417 tgacacttttaatacatcttgtacttaggtgttt-cactgccgttgttaatatatctcatttttatgtctt 13868486  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 45794994 - 45794900
Alignment:
Q  143 ttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    |||||||||||||| ||  || || ||| |||||||||||||||||||||||| ||||  | ||||||||||||||||||  ||||||||| ||||    
T  45794994 ttatatgtttgactatttctaggggtgatacttttagtacatcttgtacttaggtgtt-tcactgccgttgttaatatatcccatttttatatctt 45794900  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 26510952 - 26511036
Alignment:
Q  152 tgactgttattaaggatgacacttttagtacatcttgtacttagatg-ttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    |||||||| | | |||||||||||| |||||||||||||||||| || ||||||   ||||| |||||||||| ||||||||||||||    
T  26510952 tgactgttttcagggatgacacttt-agtacatcttgtacttaggtggttcacta--ccgttattaatatattccatttttatgtctt 26511036  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 50729542 - 50729510
Alignment:
Q  206 tgccgttgttaatatatttcatttttatgtctt 238  Q
    ||||| |||||||||||||||||||||||||||    
T  50729542 tgccggtgttaatatatttcatttttatgtctt 50729510  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 9510357 - 9510264
Alignment:
Q  143 ttatatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    |||||||  |||||||| ||| || ||||||||||||||||||||||| |||| ||  | | ||||||||||||||||||||||||||||||||||    
T  9510357 ttatatgactgactgtt-ttaggggtgacacttttagtacatcttgtatttaggtga-ctcactgccgttgttaatatatttcatttttatgtctt 9510264  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 6244683 - 6244617
Alignment:
Q  171 cacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    |||| |||||||||||||||||||| ||  | | |||||||||||||||||||  |||||||||||||    
T  6244683 cactcttagtacatcttgtacttaggtga-ctcactgccgttgttaatatattcaatttttatgtctt 6244617  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 40514311 - 40514377
Alignment:
Q  171 cacttttagtacatcttgtacttagatgttcactctgccgttgttaatatatttcatttttatgtctt 238  Q
    ||||||||||||||||||||||||| ||||  | ||||||||||||||||||  ||||||||||||||    
T  40514311 cacttttagtacatcttgtacttaggtgtt-tcactgccgttgttaatatatcccatttttatgtctt 40514377  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 20857516 - 20857462
Alignment:
Q  146 tatgtttgactgttattaaggatgacacttttagtacatcttgtacttagatgtt 200  Q
    ||||||||||| ||  || || |||||||||||||||||||||||||||| ||||    
T  20857516 tatgtttgactatttctaggggtgacacttttagtacatcttgtacttaggtgtt 20857462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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