View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405_high_31 (Length: 276)
Name: NF4405_high_31
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 2813525 - 2813746
Alignment:
| Q |
19 |
ataaaagtagctctaaaacttcatatccaactccaagtgctatgagagtatctcctgaatggattgacattgagaaaatattgttttttcttatattcgg |
118 |
Q |
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| T |
2813525 |
ataaaagtagctctaaaacttcatatccaactccaagtgctatgagagtatctcctgaatggattgacattgagaaaatattgttttttcttatattcgg |
2813624 |
T |
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| Q |
119 |
atgaatggatccgaaaattttgatagctttttccatatggattggtgaatatatag-----agagtggtgcggtttttaataccattgagctaaagatga |
213 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
2813625 |
atgaatggatccgaaaattttgataactttttccatatggattggtgaatatatagagagtagagtggtgtggtttttaataccattgagctaaagatga |
2813724 |
T |
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| Q |
214 |
agctcttcaaatctcaatatct |
235 |
Q |
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|||||||||||||||||||||| |
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| T |
2813725 |
agctcttcaaatctcaatatct |
2813746 |
T |
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