View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4405_high_5 (Length: 703)
Name: NF4405_high_5
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 211 - 645
Target Start/End: Original strand, 46694848 - 46695287
Alignment:
| Q |
211 |
aaagaaaccacaacgtcgcggtgcaccggcgacacaacaagagggtggtgtcaccttgaaggcaaagcaccaccaccaccgatctacatcttggcagaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46694848 |
aaagaaaccacaacgtcgcggtgcaccggcgacacaacaagagggtggtgtcaccttgaaggcaaagcaccaccaccaccgatctacatcttggcagaaa |
46694947 |
T |
|
| Q |
311 |
gatattggatttggaagggagaaaggtatcagcgggtgtgagcttttctagtgagaagggagagcnnnnnnnctagagagagaaaagggtgataaatata |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
46694948 |
gatattggatttggaagggagaaaggtatcggcaggtgtgagcttttctagagagaagggagagctttttttctcgagagagaaaagggtgataaatata |
46695047 |
T |
|
| Q |
411 |
tgtgacaccaatactacatttatggaccatttcaaatcatgtctatctttgtgcaaccatctcaagtgttacttttgttgtcgatgtaataattacacca |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46695048 |
tgtgacaccaatactacatttatggaccatttcaaatcatgtctatctttgtgcaaccatcttaagtgttacttttgttgttgatgtaataattacacca |
46695147 |
T |
|
| Q |
511 |
tctttttaaacaaagtcatttcttttggttttttaacc---aatatctatagaaaactcattagc--attctccagcatgtaatatttaaagttgtgcat |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
46695148 |
tctttttaaacaaagtcatttcttttggtttcttaaccaataatatctatagaaaactcattagcatattctccagcatgtaatatttgaagttgtgcat |
46695247 |
T |
|
| Q |
606 |
tgtggaatcaacgcaatgattataacaaaatagggttttc |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46695248 |
tgtggaatcaacgcaatgattataacaaaatagggttttc |
46695287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 46694692 - 46694816
Alignment:
| Q |
73 |
tgaccgtacccacccatatagaaacaaagaaggagacatggtcaacaataaacacaaacccaacaacctaaaaaagtttccagatcttgaagaatgcaca |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
46694692 |
tgaccgtacccacccatatagaaacaaagaaggcgacatggtcaacaataaacacaaacccaataacctaaaaaagtatccagatcttgaagaaagcaca |
46694791 |
T |
|
| Q |
173 |
caaccaaaacaagcttccagatctg |
197 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
46694792 |
caaccaaaacaagcttccagatctg |
46694816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 211 - 375
Target Start/End: Original strand, 20114272 - 20114438
Alignment:
| Q |
211 |
aaagaaaccacaacgtcgcggtgcaccggcgacacaacaagagggtggtgtcaccttgaaggcaaa-gcaccaccaccaccg-atctacatcttggcaga |
308 |
Q |
| |
|
|||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| | ||||||||||||||||| |
|
|
| T |
20114272 |
aaagaaaccaaatcatcgcggtgcaccggcgactcaacaagagggtggtgtcaccttgaagggaagcgcaccaccaccactggatctacatcttggcaga |
20114371 |
T |
|
| Q |
309 |
aagatattggatttggaagggagaaaggtatcagcgggtgtgagcttttctagtgagaagggagagc |
375 |
Q |
| |
|
||| ||||||||||||||||||||||||| || | |||||||||||||||||| ||||||| ||||| |
|
|
| T |
20114372 |
aaggtattggatttggaagggagaaaggtctctgtgggtgtgagcttttctagagagaaggcagagc |
20114438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 20114191 - 20114244
Alignment:
| Q |
106 |
agacatggtcaacaataaacacaaacccaacaacctaaaaaagtttccagatct |
159 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
20114191 |
agacagggtcaacaacaaacacaaacccaaccacctaaaaaaccttccagatct |
20114244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 606 - 644
Target Start/End: Original strand, 46676279 - 46676317
Alignment:
| Q |
606 |
tgtggaatcaacgcaatgattataacaaaatagggtttt |
644 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
46676279 |
tgtggaatcaacgcaacgattataacaaaataggatttt |
46676317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 551
Target Start/End: Original strand, 52672345 - 52672399
Alignment:
| Q |
497 |
taataattacaccatctttttaaacaaagtcatttcttttggttttttaaccaat |
551 |
Q |
| |
|
||||||||||| ||| |||||| ||||||| | |||||| ||||||||||||||| |
|
|
| T |
52672345 |
taataattacaacatttttttatacaaagttaattctttaggttttttaaccaat |
52672399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University