View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405_low_1 (Length: 898)
Name: NF4405_low_1
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Complemental strand, 5135435 - 5135004
Alignment:
| Q |
16 |
agttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatacttgaaacggttgatcagtttttgaaag |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5135435 |
agttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatacttgaaacggttgatcagtttttgaaag |
5135336 |
T |
|
| Q |
116 |
ggggtatgtgctcaccataaatctttccttgattgcgattattgacaagagattatttagctcaatgtgggacagttttgctaccttcctctccaattca |
215 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5135335 |
ggggtaagtgcccaccataaatctttccttgattgcgataattgacaagacattatttagctcaatgtgggacagttatgctaccttcctctccaattca |
5135236 |
T |
|
| Q |
216 |
caattagggcacaccctaaactagttgaatgagtgtgcagtttggaagtcaccaaggagtaagctgcacagaagaggagtttgcagaaaccatgggagac |
315 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5135235 |
caattaggggt-actctaaactagttgaatgagtgtgcagtttggaagtcaccaaggagtaagctgcacagaagaggagtttgcagaaaccatgggagac |
5135137 |
T |
|
| Q |
316 |
agcatcctgatactgaaatgtgattataagttgcattaggcgacgctaaaagctgaacaatctggcttcaactatgtactgagtggtggctaacagtgtc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5135136 |
agcatcctgatactgaaatgtgattataagttgcattaggcgacgctaaaagctgaacaatctggcttcaactatgtactgagtggtgactaacagtgtc |
5135037 |
T |
|
| Q |
416 |
atagtcgtgattggggttaaaagctgcttatag |
448 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
5135036 |
atagtcgtgattcgggttaaaagctgcttatag |
5135004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 5100160 - 5099736
Alignment:
| Q |
17 |
gttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgtatacttgaaacggttgatcagtttttgaaagg |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
5100160 |
gttcattcaccataacatttgtctctaaggttgtgacttcttacttttcaccaatatgttggatatgaatacttgaaacggttgatcagtttttgaaagg |
5100061 |
T |
|
| Q |
117 |
ggg-tatgtgctcaccataaatctttccttgattgcgattattgacaagagattatttagctcaatgtgggacagttttgctaccttcctctccaattca |
215 |
Q |
| |
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||| || |||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||| ||||||||||| || ||||||| |
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| T |
5100060 |
gggttaagtgcccaccataaatctttccttgattgcgattattgacaagagagtattt-gctcaatgtaggagagttatgctaccttccacttcaattca |
5099962 |
T |
|
| Q |
216 |
caattagggcacaccctaaactagttgaatgagtgtgcagtttggaagtcaccaaggagtaagctgcacagaagaggagtttgcagaaaccatgggagac |
315 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||| | |
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| T |
5099961 |
caattagtg--caccctaaactagttgaatgagtgtgcggtttggaagccaccaagggg--------------gaggagtttgcagaaaccatgggaggc |
5099878 |
T |
|
| Q |
316 |
ag---catcctgatactgaaatgtg------attataagttgcattaggcgacgctaaaagctgaacaatctggcttcaactatgtactgagtggtggct |
406 |
Q |
| |
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|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
5099877 |
agcatcatcctgatactgaaatgtgatgcgtattataagttgtattaggcgacgctaaaagctgaataatctggcttcaactatgtacttagtggtggct |
5099778 |
T |
|
| Q |
407 |
aacagtgtcatagtcgtgattggggttaaaagctgcttatag |
448 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5099777 |
aacagtgtcatagtcgtgattcgggttaaaagctgcttatag |
5099736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 167 - 446
Target Start/End: Original strand, 5057851 - 5058132
Alignment:
| Q |
167 |
attatttagctcaatgtgggacagttttgctaccttcctctccaattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagtca |
266 |
Q |
| |
|
||||||| | |||||||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5057851 |
attattttggtcaatgtgggacagatatactaccttccactccaattcacaattagggcacaccctaaactagttgaatgagtgtgcagtttggaagcca |
5057950 |
T |
|
| Q |
267 |
ccaaggagtaagctgcacagaagaggagtttgcagaaaccatgggagacagcatcctgatactgaaatgtg------attataagttg-------catta |
353 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||||| | ||||| |
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| T |
5057951 |
ccaagaagtaggctgcac----------tttgcagaaaccatgggtggcagcatcctgatactgaaatgtgctgcatattataagtcgcctgtcacatta |
5058040 |
T |
|
| Q |
354 |
ggcgacgctaaaagctgaacaatctggcttcaactatgtactgagtggtggctaacagtgtcatagtcgtgattggggttaaaagctgcttat |
446 |
Q |
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|| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| ||| ||| |||||||||||| |
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| T |
5058041 |
ggtgacgataaaagctgaacaatctggcttcaactatgtatttagtggtggctaacagtgtcataatcgtgactggagtt-aaagctgcttat |
5058132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 445 - 559
Target Start/End: Original strand, 30975250 - 30975364
Alignment:
| Q |
445 |
atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaatcgccaaacattactttaaatctcaggcaaccagtgac |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||| | ||| |||||||||||||| |||||||||||||| |
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| T |
30975250 |
atagttggtatcattcaaatgagattaatgaaaataaagcaaagaaaaaatgaataacagaataactaaaaattactttaaatctaaggcaaccagtgac |
30975349 |
T |
|
| Q |
545 |
atcaaatttcgaagg |
559 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
30975350 |
atcaaatttcaaagg |
30975364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 575 - 617
Target Start/End: Original strand, 30975414 - 30975456
Alignment:
| Q |
575 |
actctcaattattcaaaatagccaaccaactatacacactata |
617 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||| |||| |
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| T |
30975414 |
actcacaattgttcaaaatagccaaccaactatacacattata |
30975456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 445 - 507
Target Start/End: Complemental strand, 19909688 - 19909626
Alignment:
| Q |
445 |
atagttggtatcattcaaatgagattaatgagaataaaacagagaaaaaatgaataatagaat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |
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|
| T |
19909688 |
atagttggtatcattcaaatgagattaatgagaataaagcaaagaaaaaatgaataacagaat |
19909626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 782 - 855
Target Start/End: Complemental strand, 25569341 - 25569268
Alignment:
| Q |
782 |
ccccagcactcaattaatttacacatgaaatctgtaatccactgtctgaaactatatttgatcgatccacaaca |
855 |
Q |
| |
|
||||||||||| | |||| |||||| ||||| || |||||||||||||||||||||||||||| |||||||||| |
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|
| T |
25569341 |
ccccagcactccactaatctacacaagaaatttgcaatccactgtctgaaactatatttgatcaatccacaaca |
25569268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 575 - 617
Target Start/End: Original strand, 15856545 - 15856587
Alignment:
| Q |
575 |
actctcaattattcaaaatagccaaccaactatacacactata |
617 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
15856545 |
actcacaattgttcaaaatagccaaccaactatacacattata |
15856587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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