View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405_low_14 (Length: 446)
Name: NF4405_low_14
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 2 - 434
Target Start/End: Complemental strand, 35242380 - 35241939
Alignment:
| Q |
2 |
aggttgcgaggcaacgcaaatcattgttttctgattcttctggtacagttaagtatcttcgagatctttgcacaaacgatcctcttatgtttgtgaaaag |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35242380 |
aggttgcgaggcaacgcaaatcattgttttctgatgcttctggtgcagttaactatcttcgagatctttgcacaaacgatcctcttatgtttgtgaaaag |
35242281 |
T |
|
| Q |
102 |
ttgtattgacgatgataggaggcttgagcgtctgttctggtgtgacggttaaagtcgtatgaattgtgagaaatttggagatgttttggccttcgatgca |
201 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
35242280 |
ttgtattgatgatgataggagccttgagcgtctgttctggtgtgacggtgaaagtcgtatgaattatgagatatttggagatgttttggccttcgatgca |
35242181 |
T |
|
| Q |
202 |
acttatcggaagaacaagtacaat--tccatttgttgtgttctcaggtgttaatcaccataatca-------gtttttgcgactggtatagtaacgcggg |
292 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35242180 |
acttatcggaagaacaagtacaattgtccgtttgttgtgttctcaggtgttaatcaccataatcagaccattgtttttgcgactggtatagtaacgcggg |
35242081 |
T |
|
| Q |
293 |
agaccgaagacacatatgtatggttgttggaacaatttttgagtgcaatgaacggtaaacctcctttgtcaattataacagatggcgaccttgcaatgaa |
392 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
35242080 |
agaccgaagacacatttgtatggttgttggaacaatttttgagtgcaatgaacggtaaacctcctttgtcagttataacagatggagaccttgcaatgaa |
35241981 |
T |
|
| Q |
393 |
aaatgccattaaaaaggcttttcctgcagcgcaccacaggtt |
434 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35241980 |
aaatgccattaaaaaggtttttcctgcagcgcaccacaggtt |
35241939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 11009975 - 11010417
Alignment:
| Q |
1 |
caggttgcgaggcaacgcaaatcattgttttctgattcttctggtacagttaagtatcttcgagatctttgcacaaacgatcctcttatgtttgtgaaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
11009975 |
caggttgcgaggcaacacaaatcattgttttctgatgcttatggtgaagttaagtatcttcgagatctttgcacagacgatcctctaatgtttgtgaaaa |
11010074 |
T |
|
| Q |
101 |
gttgtattgacgatgataggaggcttgagcgtctgttctggtgtgacggttaaagtcgtatgaattgtgagaaatttggagatgttttggccttcgatgc |
200 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||| |
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| T |
11010075 |
gctgtattgacgatgataggaggcttgagcgtctgttctggtgtgacggtgaaagtcgtatgaattatgagatatttggagatgttttggcctttgatgc |
11010174 |
T |
|
| Q |
201 |
aacttatcggaagaacaagtacaat--tccatttgttgtgttctcaggtgttaatcaccataatca-------gtttttgcgactggtatagtaacgcgg |
291 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |
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| T |
11010175 |
aacttatcggaagaacaagtacaattgtctgtttgttgtgttctcaggtgttaatcaccataatcagaccattgtttttgcgacaggtgtagtaacgcgg |
11010274 |
T |
|
| Q |
292 |
gagaccgaagacacatatgtatggttgttggaacaatttttgagtgcaatgaacggtaaacctcctttgtcaattataacagatggcgaccttgcaatga |
391 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11010275 |
gagaccgaagacacatatgtatagctgttggaacaatttttgagtgcaatgaacggtaaacctcctttgtcagttataacagatggcgaccttgcaatga |
11010374 |
T |
|
| Q |
392 |
aaaatgccattaaaaaggcttttcctgcagcgcaccacaggtt |
434 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
11010375 |
aaaatgccattaaaaaggtttttcctacagcgcaccacaggtt |
11010417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 42 - 339
Target Start/End: Complemental strand, 26131553 - 26131247
Alignment:
| Q |
42 |
tggtacagttaagtatcttcgagatctttgcacaaacgatcctcttatgtttgtgaaaagttgtattgacgatgataggaggcttgagcgtctgttctgg |
141 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || || |||| ||||||||||| | ||| ||||| ||||||||||||| ||| || |||| ||| |
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| T |
26131553 |
tggtgcagttaagtatcttcgagatctttgcaccaaagaccctcgtatgtttgtgagacactgttttgacaatgataggaggctggagtgtttgttatgg |
26131454 |
T |
|
| Q |
142 |
tgtgacggttaaagtcgtatgaattgtgagaaatttggagatgttttggccttcgatgcaacttatcggaagaacaagtacaatt--ccatttgttgtgt |
239 |
Q |
| |
|
||||||||| ||||||||||||| | ||||| |||||||||||||||| |||| |||||||| |||||||| ||||||||||||| || ||||||||| |
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| T |
26131453 |
tgtgacggtgaaagtcgtatgaactatgagatatttggagatgttttgacctttgatgcaacatatcggaaaaacaagtacaattgcccgcttgttgtgt |
26131354 |
T |
|
| Q |
240 |
tctcaggtgttaatcaccataatca-------gtttttgcgactggtatagtaacgcgggagaccgaagacacatatgtatggttgttggaacaattttt |
332 |
Q |
| |
|
| || |||||||||||||| || |||||||||||||| ||||||| |||||||| ||||| ||| ||| |||||||||||||||||| || |
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| T |
26131353 |
ttcttggggttaatcaccataaccagaccattgtttttgcgactgggatagtaatacgggagactgaagaaacaaatgcatggttgttggaacaattctt |
26131254 |
T |
|
| Q |
333 |
gagtgca |
339 |
Q |
| |
|
|| |||| |
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|
| T |
26131253 |
gattgca |
26131247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 344
Target Start/End: Original strand, 21427908 - 21428093
Alignment:
| Q |
168 |
tgagaaatttggagatgttttggccttcgatgcaacttatcggaagaacaagtacaatt--ccatttgttgtgttctcaggtgttaatcaccataatca- |
264 |
Q |
| |
|
||||| |||||||||||| | ||||| |||| ||| ||||| || |||||||| |||| || |||||| | || ||| ||||||| ||||||||||| |
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| T |
21427908 |
tgagatatttggagatgtcattgcctttgatgtaacgtatcgaaaaaacaagtataattgtccgtttgttattttttcaagtgttaaccaccataatcat |
21428007 |
T |
|
| Q |
265 |
------gtttttgcgactggtatagtaacgcgggagaccgaagacacatatgtatggttgttggaacaatttttgagtgcaatgaa |
344 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||| |||| || || || |||||||||||||| || || ||||||||||| |
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|
| T |
21428008 |
atgattgtttttggtgctggtatcgtaacacgggagaccaaagagacgtacgtgtggttgttggaacagttcttaagtgcaatgaa |
21428093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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