View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4405_low_16 (Length: 419)
Name: NF4405_low_16
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 31349194 - 31348950
Alignment:
| Q |
1 |
acaaaaggttcaatttattggtggaatattcatgcatgctacctataacaattttcttgctatactttgtgtgcacacatttcatcttttgataaataag |
100 |
Q |
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| T |
31349194 |
acaaaaggttcaatttattggtggaatattcatgcatgctacctataacaatttccttgctatactttgtgtgcacacatttcatcttttgataaataag |
31349095 |
T |
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| Q |
101 |
atgatnnnnnnngttggaaaaggataacaatgtgagaaagtacaacataaaagatcttattcaaggggtctgttttagaagtgaaaatgaaccaatcaag |
200 |
Q |
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| T |
31349094 |
atgataaaaaa-gttggaaaaggataacaatgtgagaaagtacaacatagaagatcttattcaaggggtttgttttagaagtgaaaatgaaccaatgaag |
31348996 |
T |
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| Q |
201 |
cttatttttatatatttttgaattatatgtttaattcactataagt |
246 |
Q |
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| T |
31348995 |
cttatttttatatatttttgaattatatgtttaattcactttaagt |
31348950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 291 - 419
Target Start/End: Complemental strand, 31348867 - 31348739
Alignment:
| Q |
291 |
aatacattaatgactttattgtgtggatgttgatcttgatttcatcctttccactaaacctacttcaactgctctagaatttacaaattttgattttagt |
390 |
Q |
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| T |
31348867 |
aatacattaatgactttattgtgtggatgttgatcttgatttcatcctttccactaaacctacttcaactgctctagaattgacaaattttgattttagt |
31348768 |
T |
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| Q |
391 |
ttgtataaatgtatgtttggtttgacttc |
419 |
Q |
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| T |
31348767 |
ttgtataaatgcatgttttgtttgacttc |
31348739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 31348898 - 31348866
Alignment:
| Q |
113 |
gttggaaaaggataacaatgtgagaaagtacaa |
145 |
Q |
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| T |
31348898 |
gttggaaaaggataacaatgtgagaaagtacaa |
31348866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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