View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405_low_18 (Length: 392)

Name: NF4405_low_18
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405_low_18
NF4405_low_18
[»] chr7 (9 HSPs)
chr7 (172-375)||(45703740-45703942)
chr7 (19-140)||(45703613-45703739)
chr7 (113-156)||(4860908-4860951)
chr7 (113-156)||(18411834-18411877)
chr7 (238-296)||(16883228-16883286)
chr7 (114-156)||(21644214-21644256)
chr7 (238-296)||(24263051-24263109)
chr7 (238-286)||(3323139-3323187)
chr7 (238-286)||(25407196-25407244)
[»] chr3 (10 HSPs)
chr3 (119-170)||(40771336-40771387)
chr3 (238-286)||(22624330-22624378)
chr3 (238-296)||(8515395-8515453)
chr3 (238-296)||(32478641-32478699)
chr3 (238-295)||(2673949-2674006)
chr3 (237-286)||(54190290-54190339)
chr3 (238-286)||(6305093-6305141)
chr3 (238-286)||(10097157-10097205)
chr3 (238-286)||(10204043-10204091)
chr3 (238-286)||(10611128-10611176)
[»] chr6 (4 HSPs)
chr6 (238-296)||(33332804-33332862)
chr6 (238-286)||(35204414-35204462)
chr6 (238-295)||(14739301-14739358)
chr6 (238-286)||(13880521-13880569)
[»] chr1 (3 HSPs)
chr1 (127-173)||(36295363-36295409)
chr1 (238-286)||(2397574-2397622)
chr1 (238-286)||(9523510-9523558)
[»] chr5 (7 HSPs)
chr5 (113-156)||(24557452-24557495)
chr5 (113-156)||(24598484-24598527)
chr5 (114-156)||(27448000-27448042)
chr5 (238-296)||(31398720-31398778)
chr5 (114-156)||(43595298-43595340)
chr5 (114-156)||(43628092-43628134)
chr5 (240-296)||(33789659-33789715)
[»] scaffold0197 (1 HSPs)
scaffold0197 (238-296)||(16037-16095)
[»] chr8 (5 HSPs)
chr8 (238-296)||(10685992-10686050)
chr8 (114-156)||(26299550-26299592)
chr8 (238-296)||(35743690-35743748)
chr8 (238-286)||(16755611-16755659)
chr8 (238-286)||(28329677-28329725)
[»] chr4 (1 HSPs)
chr4 (113-163)||(47745865-47745914)
[»] chr2 (6 HSPs)
chr2 (238-296)||(19347579-19347637)
chr2 (114-156)||(25394063-25394105)
chr2 (238-286)||(2737987-2738035)
chr2 (238-286)||(20053111-20053159)
chr2 (238-286)||(39684030-39684078)
chr2 (238-286)||(45569172-45569220)
[»] scaffold0078 (1 HSPs)
scaffold0078 (115-156)||(35188-35229)
[»] scaffold0023 (1 HSPs)
scaffold0023 (238-286)||(49557-49605)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 172 - 375
Target Start/End: Original strand, 45703740 - 45703942
Alignment:
Q  172 tttctaagaaatcatcaatcataatgagcaaatagaaactattgtcaagatatgttgctattgtcagaccccaaagatttgaacgaacatactcaaaagg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  45703740 tttctaagaaatcatcaatcataatgagcaaatagaaactattgtcaagatatgttgctattgtcagaccccaaag-tttgaacgaacatattcaaaagg 45703838  T
Q  272 tctactagaattatgaatgtcacttacttaaatgtatgttgtttctttaatatgcaattatcataaaattctaattcctctaatttaacattccctaaca 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45703839 tctactagaattatgaatgtcacttacttaaatgtatgttgtttctttaatatgcaattatcataaaattccaattcctctaatttaacattccctaaca 45703938  T
Q  372 caca 375  Q
    ||||    
T  45703939 caca 45703942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 45703613 - 45703739
Alignment:
Q  19 aaaactcattaaaagatcctaaaacaaa-----cttgaggtcgttgttagttcttaatactttcaatttagtttatgagtgattctctataagaatacat 113  Q
    ||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  45703613 aaaactcattaaaagatcctaaaacaaattaaacttgaggtcgttgttagttcttaatactttcaatttagtttctgagtgattctctataagaatatat 45703712  T
Q  114 cattccttaaactttttaaaggtgtca 140  Q
    |||||||||||||||||||||||||||    
T  45703713 cattccttaaactttttaaaggtgtca 45703739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 4860908 - 4860951
Alignment:
Q  113 tcattccttaaactttttaaaggtgtcacttttatttttcaaaa 156  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  4860908 tcattccttaaacttttcaaatgtgtcacttttgtttttcaaaa 4860951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 18411834 - 18411877
Alignment:
Q  113 tcattccttaaactttttaaaggtgtcacttttatttttcaaaa 156  Q
    ||||||||||||||||| ||| ||||||||||| ||||||||||    
T  18411834 tcattccttaaacttttaaaatgtgtcacttttttttttcaaaa 18411877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 16883228 - 16883286
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcactt 296  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||| ||| ||| |||||    
T  16883228 gaccccaaagatccgaatgcacatactcaaaaggtctactagaatgatgcatgccactt 16883286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 21644214 - 21644256
Alignment:
Q  114 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 156  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  21644214 cattccttaaacttttcaaatgtgtcacttttgtttttcaaaa 21644256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 24263109 - 24263051
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcactt 296  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||| ||| ||| |||||    
T  24263109 gaccccaaagatccgaatgcacatactcaaaaggtctactagaatgatgcatgccactt 24263051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 3323139 - 3323187
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  3323139 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 3323187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 25407244 - 25407196
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  25407244 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 25407196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 40771336 - 40771387
Alignment:
Q  119 cttaaactttttaaaggtgtcacttttatttttcaaaatatgaactcatact 170  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  40771336 cttaaacttttcaaatgtgtcacttttatgtttcaaaatatgaactcatact 40771387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 22624330 - 22624378
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    |||||||||||| |||| |||||||||||||||| |||||||| |||||    
T  22624330 gaccccaaagatctgaatgaacatactcaaaaggcctactagatttatg 22624378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 8515395 - 8515453
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcactt 296  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||| ||| ||| |||||    
T  8515395 gaccccaaagatccgaatgcacatactcaaaaggtctactagaatgatgcatgccactt 8515453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 32478641 - 32478699
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcactt 296  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||| ||| ||| |||||    
T  32478641 gaccccaaagatccgaatgcacatactcaaaaggtctactagaatgatgcatgccactt 32478699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 2674006 - 2673949
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcact 295  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||| ||| ||| ||||    
T  2674006 gaccccaaagatccgaatgcacatactcaaaaggtctactagaatgatgcatgccact 2673949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 54190339 - 54190290
Alignment:
Q  237 agaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    |||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  54190339 agaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 54190290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 6305141 - 6305093
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  6305141 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 6305093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 10097157 - 10097205
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  10097157 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 10097205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 10204043 - 10204091
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  10204043 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 10204091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 10611128 - 10611176
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  10611128 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 10611176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 33332862 - 33332804
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcactt 296  Q
    |||||||||||| |||| | ||||||||||||||||||||||||| ||| ||| |||||    
T  33332862 gaccccaaagatctgaatgcacatactcaaaaggtctactagaatgatgcatgccactt 33332804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 35204414 - 35204462
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| ||||||||||||||||||||||||| |||||    
T  35204414 gaccccaaagatccgaatgaacatactcaaaaggtctactagatttatg 35204462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 14739358 - 14739301
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcact 295  Q
    |||||||||||| |||| | |||||||||||||| |||||||||| ||| ||| ||||    
T  14739358 gaccccaaagatctgaatgcacatactcaaaaggcctactagaatgatgcatgccact 14739301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 13880569 - 13880521
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  13880569 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 13880521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 36295409 - 36295363
Alignment:
Q  127 ttttaaaggtgtcacttttatttttcaaaatatgaactcatactctt 173  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  36295409 ttttaaaggtgtcacttttatgttttaaaatgtgaactcatactctt 36295363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 2397574 - 2397622
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  2397574 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 2397622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 9523558 - 9523510
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  9523558 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 9523510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 24557495 - 24557452
Alignment:
Q  113 tcattccttaaactttttaaaggtgtcacttttatttttcaaaa 156  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||    
T  24557495 tcattccttaaacttctcaaaggtgtcacttttgtttttcaaaa 24557452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 24598527 - 24598484
Alignment:
Q  113 tcattccttaaactttttaaaggtgtcacttttatttttcaaaa 156  Q
    ||||||||||||||| | ||||||||||||||| ||||||||||    
T  24598527 tcattccttaaacttctcaaaggtgtcacttttgtttttcaaaa 24598484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 27448000 - 27448042
Alignment:
Q  114 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 156  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  27448000 cattctttaaacttttcaaaggtgtcacttttgtttttcaaaa 27448042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 31398778 - 31398720
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcactt 296  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||| ||| ||| |||||    
T  31398778 gaccccaaagatccgaatgcacatactcaaaaggtctactagaatgatgcatgccactt 31398720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 43595298 - 43595340
Alignment:
Q  114 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 156  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  43595298 cattctttaaacttttcaaaggtgtcacttttgtttttcaaaa 43595340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 43628092 - 43628134
Alignment:
Q  114 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 156  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||    
T  43628092 cattctttaaacttttcaaaggtgtcacttttgtttttcaaaa 43628134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 33789659 - 33789715
Alignment:
Q  240 ccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcactt 296  Q
    ||||||||||  ||| | ||||||||||||||||||||||||| ||| ||| |||||    
T  33789659 ccccaaagatccgaatgcacatactcaaaaggtctactagaatgatgcatgccactt 33789715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 16095 - 16037
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcactt 296  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||| ||| ||| |||||    
T  16095 gaccccaaagatccgaatgcacatactcaaaaggtctactagaatgatgcatgccactt 16037  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 10686050 - 10685992
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcactt 296  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||| ||| ||| |||||    
T  10686050 gaccccaaagatccgaatgcacatactcaaaaggtctactagaatgatgcatgccactt 10685992  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 26299550 - 26299592
Alignment:
Q  114 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 156  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  26299550 cattccttaaacttttcaaatgtgtcacttttgtttttcaaaa 26299592  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 35743690 - 35743748
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcactt 296  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||| ||| ||| |||||    
T  35743690 gaccccaaagatccgaatgcacatactcaaaaggtctactagaatgatgcatgccactt 35743748  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 16755611 - 16755659
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  16755611 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 16755659  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 28329725 - 28329677
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  28329725 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 28329677  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 47745914 - 47745865
Alignment:
Q  113 tcattccttaaactttttaaaggtgtcacttttatttttcaaaatatgaac 163  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||| |||||    
T  47745914 tcattccttaaacttttcaaatgtgtcac-tttatttttcaaaatgtgaac 47745865  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 19347579 - 19347637
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatgaatgtcactt 296  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||| ||| ||| |||||    
T  19347579 gaccccaaagatccgaatgcacatactcaaaaggtctactagaatgatgcatgccactt 19347637  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 25394063 - 25394105
Alignment:
Q  114 cattccttaaactttttaaaggtgtcacttttatttttcaaaa 156  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||    
T  25394063 cattccttaaacttttcaaatgtgtcacttttgtttttcaaaa 25394105  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 2738035 - 2737987
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  2738035 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 2737987  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 20053111 - 20053159
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  20053111 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 20053159  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 39684078 - 39684030
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  39684078 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 39684030  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 45569220 - 45569172
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  45569220 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 45569172  T

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Target: scaffold0078 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Original strand, 35188 - 35229
Alignment:
Q  115 attccttaaactttttaaaggtgtcacttttatttttcaaaa 156  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||    
T  35188 attccttaaacttattaaaggtgtcacttttgttttttaaaa 35229  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 49557 - 49605
Alignment:
Q  238 gaccccaaagatttgaacgaacatactcaaaaggtctactagaattatg 286  Q
    ||||||||||||  ||| |||||||||||||||| |||||||| |||||    
T  49557 gaccccaaagatccgaatgaacatactcaaaaggcctactagatttatg 49605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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