View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405_low_2 (Length: 849)

Name: NF4405_low_2
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405_low_2
NF4405_low_2
[»] chr5 (2 HSPs)
chr5 (18-742)||(5493425-5494149)
chr5 (789-840)||(5494196-5494247)


Alignment Details
Target: chr5 (Bit Score: 705; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 18 - 742
Target Start/End: Original strand, 5493425 - 5494149
Alignment:
Q  18 atttcgatttcggtgaagttctcttcgatttcggaagcggcgtaaccgtcgaattactctcttttttcgccggactaccgttactgagagaactctgccg 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5493425 atttcgatttcggtgaagttctcttcgatttaggaagcggcgtaaccgtcgaattactctctttcttcgccggactaccgttactgagagaactctgccg 5493524  T
Q  118 tgaaactgaatacggcgtgtaaaatccatcttcctgacttactgaagaattctgcggcgaatggaacgctgtttcgttactttcttcatcggaatcttct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5493525 tgaaactgaatacggcgtgtaaaatccatcttcctgacttactgaagaattctgcggcgaatggaacgctgtttcgttactttcttcatcggaatcttct 5493624  T
Q  218 tccgacgacatcgccggcggaatgtttccgttcggaggtttactcaacggcggcattggctgtaactctggactcggccgataccgatcggatcgcttaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  5493625 tccgacgacatcgccggcggaatgtttccgttcggaggtttactcaacggcggcattggctgtaactccggactcggacgataccgatcggatcgcttaa 5493724  T
Q  318 cggaattcagtttatgatacggtgaacggttaggcttctccgtttgattctgatcgttgaccgtcgttgaccttctcgaaggttccacagttccaatgta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5493725 cggaattcagtttatgatacggtgaacggttaggcttctccgtttgattctgatcgttgaccgtcgttgaccttctcgaaggttccacagttccaatgta 5493824  T
Q  418 gagaaaattcgaagctactaccggagcagatgaattcgatgaatcttgaagagaattgttcctctgtgtggtattactcactagcttctgtgtatccgcg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5493825 gagaaaattcgaagctactaccggagcagatgaattcgatgaatcttgaagagaattgttcctctgtgtggtagtactcactagcttctgtgtatccgcg 5493924  T
Q  518 gcgttttttgctctgtgtttgtataaaaagaaagctaacgccgacaacattcctaacgttacgattccaacggagattgctattgctactttctttgttc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5493925 gcgttttttgctctgtgtttgtataaaaagaaagctaacgccgacaacattcctaacgttacgattccaacggagattgctattgctactttctttgttc 5494024  T
Q  618 cttttgcaggttgtgttgccgttggattcgctgttgtggcgttagaagttaacggtgctgcttgattctgattcgacggtggtgcgtctggatattcatg 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5494025 cttttgcaggttgtgttgccgttggattcgctgttgtggcgttagaagttaacggtgctgcttgattctgattcgacggtggtgcgtctggatattcatg 5494124  T
Q  718 gaagaatggaatgttgtcggaggaa 742  Q
    |||||||||||||||||||||||||    
T  5494125 gaagaatggaatgttgtcggaggaa 5494149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 789 - 840
Target Start/End: Original strand, 5494196 - 5494247
Alignment:
Q  789 ctgaactcgctgggaataatggttgatggagaattcttcttgtgtgatgatg 840  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5494196 ctgaactcgctgggaataatggttgatggagaattcttcttgtgtgatgatg 5494247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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