View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4405_low_21 (Length: 368)
Name: NF4405_low_21
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4405_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 14340260 - 14340611
Alignment:
| Q |
1 |
tgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340260 |
tgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagcc |
14340359 |
T |
|
| Q |
101 |
atttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340360 |
atttacaccattgatattggacaaaatgatattagctatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttga |
14340459 |
T |
|
| Q |
201 |
gccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaattggtttgattccagtt |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14340460 |
gccaattcacccaagcagtgcaggtgataattagcaaccaaagaaattaagcctcgttgatgcattattatcaagtttggcgattggtttgattccagtt |
14340559 |
T |
|
| Q |
301 |
atattgtagtatgattgaaccaagtggaaccggtattggtttaattgatttt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340560 |
atattgtagtatgattgaaccaagtggaaccggtattggtttaattgatttt |
14340611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 3601390 - 3601737
Alignment:
| Q |
1 |
tgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
3601390 |
tgaatggtgaaaaactgaacctat----gtgatgtcatttatagggacagaaccacctctcagaagtggcgttccaaggactgaagatttctcaaaagcc |
3601485 |
T |
|
| Q |
101 |
atttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3601486 |
atttacaccattgatattggacaaaatgatattggctatggtctgcagaagccgaactcttcagaggaagaagttagaaggtcaattcctgatatcttga |
3601585 |
T |
|
| Q |
201 |
gccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaattggtttgattccagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601586 |
gccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaattggtttgattccagtt |
3601685 |
T |
|
| Q |
301 |
atattgtagtatgattgaaccaagtggaaccggtattggtttaattgatttt |
352 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3601686 |
acattgtagtatgattgaaccaagttgaaccggtattggtttaattgatttt |
3601737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 74 - 345
Target Start/End: Original strand, 3568467 - 3568732
Alignment:
| Q |
74 |
ccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaag |
173 |
Q |
| |
|
||||||| | |||||||||| || ||||||||||| |||||||||| ||||||||||||||| | ||||||||||||| |||||||||||| ||| |
|
|
| T |
3568467 |
ccaaggactaaagatttctctaaggccatttacacaattgatattgcacaaaatgatattggctttggtctgcagaag------tcttcagaggaacaag |
3568560 |
T |
|
| Q |
174 |
ttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatca |
273 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568561 |
ttagaaggtcaattcctgacatcttgagccaattctcccaagcagtgcaggtaattagcaaccaccaaagaaattaagccttgttgatgcattattatca |
3568660 |
T |
|
| Q |
274 |
agtttggcaattggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaat |
345 |
Q |
| |
|
||||||||||||||||||||| | |||| |||| |||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
3568661 |
agtttggcaattggtttgattacggttacattgcagtatgattgcaccaagttgaacatctattggtttaat |
3568732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 250 - 352
Target Start/End: Original strand, 3590710 - 3590812
Alignment:
| Q |
250 |
agccttgttgatgcattattatcaagtttggcaattggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgat |
349 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||| |||| |||| |||| ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
3590710 |
agccttgttgatacattattattaagtttggcaattggtttgtttcctgttacattgcagtatgattgaactaagttgaaccggtattggtttaattgat |
3590809 |
T |
|
| Q |
350 |
ttt |
352 |
Q |
| |
|
||| |
|
|
| T |
3590810 |
ttt |
3590812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 3590634 - 3590708
Alignment:
| Q |
154 |
gaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
228 |
Q |
| |
|
|||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3590634 |
gaacacttcaaaggaacaagttagaaggtcatttcctgatatcttgagccaattcttccaagcagtgcaggtaat |
3590708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 259
Target Start/End: Original strand, 1408690 - 1408906
Alignment:
| Q |
37 |
atttatagggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggt |
136 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||| |||||||||| ||| || ||||| || ||| ||||||| ||||||||||||||||||||| ||| |
|
|
| T |
1408690 |
atttatagggacagaatcacctttcaaaagtggtcttccaaggaatgaggaattctctaaggccctttacacaattgatattggacaaaatgatcttgcc |
1408789 |
T |
|
| Q |
137 |
tatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagca |
236 |
Q |
| |
|
|||| | ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |
|
|
| T |
1408790 |
attggtttacagaa------cacttcagaggaacaagttaaaaggtcaattcctgatatcttgagccaattctcccaagcagtgcaggtaatttgtaacc |
1408883 |
T |
|
| Q |
237 |
accaaagaaattaagccttgttg |
259 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
1408884 |
accaaagatattaagccttgttg |
1408906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 228
Target Start/End: Original strand, 1416682 - 1416861
Alignment:
| Q |
43 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggt |
142 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||| ||| |||||||| || ||| ||||||| ||||||||||||||||||||| ||| | ||||| |
|
|
| T |
1416682 |
agggacagaaccatctctcaaaagtggtcttccaaggcctgaggatttctctaaggccctttacacaattgatattggacaaaatgatcttgctcatggt |
1416781 |
T |
|
| Q |
143 |
ctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
228 |
Q |
| |
|
| || || ||||||||||| ||||| |||||||||||||||| || |||||| | ||| ||||| ||||| ||||||| |
|
|
| T |
1416782 |
tttca------atacacttcagaggaacaagttcaaaggtcaattcctgaaatattgagcaatttctcccaatcagtgaaggtaat |
1416861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 228
Target Start/End: Original strand, 1411832 - 1412011
Alignment:
| Q |
43 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggt |
142 |
Q |
| |
|
|||||| ||||| ||||||| |||||| |||||| || ||| || ||||| || ||| ||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
1411832 |
agggacggaaccgcctctcaaaagtggtcttccagggcctgaggacttctctaaggccctttacacaattgatattggacaaaatgatcttgcctatggt |
1411931 |
T |
|
| Q |
143 |
ctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
228 |
Q |
| |
|
| | | | || ||||||| ||| ||||| |||||||||||||||| || ||||||||||| ||||||||||| ||||||| |
|
|
| T |
1411932 |
tttc----gac--acacttcagaagaacaagttcaaaggtcaattcctgaaatattgagccaattgtcccaagcagtgaaggtaat |
1412011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 332
Target Start/End: Original strand, 1409071 - 1409118
Alignment:
| Q |
285 |
tggtttgattccagttatattgtagtatgattgaaccaagtggaaccg |
332 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |||||| |
|
|
| T |
1409071 |
tggtttgattccgattatattgcagtatgattgaaccaagttgaaccg |
1409118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 1421141 - 1421228
Alignment:
| Q |
43 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgat |
130 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||| ||| || |||| | ||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
1421141 |
agggacagaaccatctctcaaaagtggtcttccaaggcctgaggacttctgtacggccctttacacaattgatattggactaaatgat |
1421228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University