View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4405_low_23 (Length: 363)

Name: NF4405_low_23
Description: NF4405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4405_low_23
NF4405_low_23
[»] scaffold0194 (1 HSPs)
scaffold0194 (11-345)||(8002-8346)
[»] chr6 (23 HSPs)
chr6 (11-200)||(32258720-32258910)
chr6 (22-200)||(19689813-19689988)
chr6 (83-200)||(31275679-31275796)
chr6 (28-200)||(12828653-12828835)
chr6 (84-200)||(29915539-29915655)
chr6 (14-193)||(26669056-26669245)
chr6 (84-200)||(8052343-8052457)
chr6 (11-200)||(29927205-29927405)
chr6 (86-200)||(17345175-17345290)
chr6 (28-122)||(1924646-1924751)
chr6 (83-200)||(34576542-34576660)
chr6 (89-200)||(4123899-4124009)
chr6 (77-147)||(11785135-11785205)
chr6 (156-244)||(1924774-1924862)
chr6 (83-143)||(30627145-30627205)
chr6 (83-147)||(26189558-26189624)
chr6 (11-68)||(29915683-29915740)
chr6 (156-200)||(4132085-4132129)
chr6 (89-130)||(4131989-4132030)
chr6 (86-200)||(10494803-10494916)
chr6 (83-147)||(23936622-23936684)
chr6 (156-200)||(6143082-6143126)
chr6 (11-71)||(23936538-23936598)
[»] chr1 (42 HSPs)
chr1 (14-193)||(50158276-50158454)
chr1 (16-199)||(1428865-1429059)
chr1 (83-247)||(12002197-12002360)
chr1 (12-146)||(52403527-52403672)
chr1 (11-200)||(6332164-6332364)
chr1 (12-200)||(11650056-11650254)
chr1 (77-200)||(15698783-15698905)
chr1 (83-200)||(254949-255068)
chr1 (27-121)||(24040995-24041100)
chr1 (83-147)||(672319-672383)
chr1 (83-246)||(17806413-17806575)
chr1 (77-193)||(40719020-40719135)
chr1 (156-245)||(84604-84693)
chr1 (11-80)||(84473-84542)
chr1 (83-193)||(17919858-17919967)
chr1 (11-147)||(28751363-28751510)
chr1 (11-200)||(43929683-43929881)
chr1 (11-80)||(48259818-48259887)
chr1 (27-80)||(50349828-50349881)
chr1 (11-67)||(1430491-1430547)
chr1 (83-147)||(5317616-5317679)
chr1 (83-200)||(26252116-26252234)
chr1 (11-122)||(30006205-30006327)
chr1 (83-193)||(44582816-44582927)
chr1 (83-135)||(50349901-50349953)
chr1 (83-146)||(5854262-5854327)
chr1 (83-121)||(43755104-43755142)
chr1 (83-193)||(45377188-45377297)
chr1 (156-244)||(9552440-9552528)
chr1 (156-199)||(1430623-1430666)
chr1 (83-147)||(28200260-28200326)
chr1 (16-63)||(43105562-43105609)
chr1 (83-147)||(2459058-2459120)
chr1 (11-80)||(40060861-40060930)
chr1 (27-80)||(45749470-45749523)
chr1 (11-67)||(10690910-10690966)
chr1 (83-119)||(10690993-10691029)
chr1 (83-115)||(37437442-37437474)
chr1 (156-200)||(38132278-38132322)
chr1 (94-147)||(44024595-44024650)
chr1 (156-200)||(44583770-44583814)
chr1 (156-200)||(48259964-48260008)
[»] chr7 (37 HSPs)
chr7 (11-244)||(41905890-41906132)
chr7 (83-247)||(17869189-17869352)
chr7 (11-121)||(18886722-18886843)
chr7 (11-147)||(34002087-34002235)
chr7 (28-245)||(40298801-40299019)
chr7 (83-200)||(1103483-1103599)
chr7 (28-122)||(28044113-28044218)
chr7 (11-200)||(3680878-3681077)
chr7 (81-197)||(19920308-19920423)
chr7 (83-147)||(19906465-19906529)
chr7 (83-142)||(5723058-5723117)
chr7 (83-147)||(42044016-42044082)
chr7 (83-244)||(42121505-42121657)
chr7 (83-144)||(33845448-33845509)
chr7 (156-244)||(43813455-43813543)
chr7 (83-147)||(42259587-42259651)
chr7 (83-122)||(22627392-22627431)
chr7 (83-200)||(30514972-30515090)
chr7 (83-200)||(31416788-31416906)
chr7 (83-147)||(32345872-32345938)
chr7 (83-147)||(36447107-36447173)
chr7 (12-121)||(36447567-36447687)
chr7 (156-245)||(40207488-40207577)
chr7 (83-197)||(26527435-26527548)
chr7 (83-124)||(48838723-48838764)
chr7 (156-200)||(32873274-32873318)
chr7 (28-80)||(34733438-34733490)
chr7 (83-147)||(26963530-26963596)
chr7 (102-193)||(19288405-19288495)
chr7 (28-78)||(33056256-33056306)
chr7 (83-147)||(39117526-39117591)
chr7 (156-200)||(28044242-28044286)
chr7 (95-143)||(30833144-30833192)
chr7 (156-200)||(32275203-32275247)
chr7 (90-122)||(33056330-33056362)
chr7 (156-200)||(36447712-36447756)
chr7 (156-200)||(48838776-48838820)
[»] chr4 (43 HSPs)
chr4 (14-144)||(45903377-45903507)
chr4 (14-200)||(52732594-52732782)
chr4 (22-121)||(50072330-50072434)
chr4 (11-140)||(44855298-44855438)
chr4 (22-121)||(51930649-51930759)
chr4 (11-121)||(21045206-21045327)
chr4 (11-121)||(31817157-31817279)
chr4 (83-197)||(31987302-31987415)
chr4 (83-200)||(19849079-19849195)
chr4 (11-80)||(56422957-56423026)
chr4 (28-122)||(34360077-34360182)
chr4 (11-81)||(32140944-32141014)
chr4 (11-200)||(34096010-34096210)
chr4 (28-200)||(37445655-37445837)
chr4 (83-200)||(47321139-47321258)
chr4 (11-122)||(54512095-54512217)
chr4 (83-200)||(24259606-24259724)
chr4 (85-147)||(30022115-30022177)
chr4 (94-200)||(54091953-54092058)
chr4 (83-200)||(22212336-22212452)
chr4 (101-244)||(29840026-29840169)
chr4 (83-200)||(31941553-31941671)
chr4 (11-115)||(43421082-43421197)
chr4 (14-197)||(45520419-45520611)
chr4 (83-147)||(45889610-45889676)
chr4 (102-200)||(19282469-19282567)
chr4 (83-197)||(29289932-29290044)
chr4 (79-120)||(38692464-38692505)
chr4 (83-143)||(38761867-38761925)
chr4 (28-119)||(15501129-15501231)
chr4 (83-119)||(39671147-39671183)
chr4 (86-200)||(51434299-51434414)
chr4 (156-250)||(56556366-56556461)
chr4 (83-147)||(17499756-17499822)
chr4 (16-67)||(31987433-31987484)
chr4 (83-147)||(34124342-34124408)
chr4 (83-142)||(45049761-45049820)
chr4 (84-121)||(32141028-32141065)
chr4 (11-123)||(36805408-36805531)
chr4 (83-144)||(42672439-42672500)
chr4 (156-200)||(6231652-6231696)
chr4 (77-113)||(11835186-11835222)
chr4 (156-200)||(15501258-15501302)
[»] chr8 (37 HSPs)
chr8 (11-244)||(7612452-7612694)
chr8 (11-244)||(9022349-9022593)
chr8 (83-200)||(11257540-11257654)
chr8 (83-200)||(14541784-14541900)
chr8 (14-80)||(2067828-2067894)
chr8 (83-245)||(22601089-22601249)
chr8 (83-198)||(34461620-34461737)
chr8 (12-69)||(24732087-24732144)
chr8 (83-200)||(27109859-27109975)
chr8 (94-200)||(5588523-5588628)
chr8 (11-80)||(6839335-6839404)
chr8 (79-200)||(42946120-42946240)
chr8 (11-193)||(32326680-32326873)
chr8 (156-245)||(1774170-1774259)
chr8 (11-198)||(3095468-3095656)
chr8 (87-197)||(8382520-8382629)
chr8 (83-144)||(32661358-32661419)
chr8 (79-119)||(11336067-11336107)
chr8 (23-69)||(2812915-2812961)
chr8 (79-121)||(7129353-7129395)
chr8 (11-68)||(38329010-38329067)
chr8 (11-63)||(27109775-27109827)
chr8 (156-200)||(38329140-38329184)
chr8 (83-118)||(26439045-26439080)
chr8 (79-118)||(29931275-29931314)
chr8 (12-71)||(32737903-32737961)
chr8 (84-121)||(18666584-18666621)
chr8 (83-124)||(30789008-30789049)
chr8 (156-244)||(35052425-35052513)
chr8 (83-124)||(39970398-39970439)
chr8 (156-193)||(41790228-41790265)
chr8 (11-80)||(45187251-45187320)
chr8 (83-147)||(5044265-5044329)
chr8 (34-66)||(7129419-7129451)
chr8 (83-119)||(16209019-16209055)
chr8 (83-119)||(41414911-41414947)
chr8 (83-119)||(41790179-41790215)
[»] chr2 (28 HSPs)
chr2 (11-193)||(4840682-4840874)
chr2 (11-198)||(7743401-7743598)
chr2 (11-122)||(40410518-40410640)
chr2 (14-193)||(1298738-1298927)
chr2 (28-121)||(4766184-4766288)
chr2 (83-244)||(2459727-2459889)
chr2 (83-147)||(37106912-37106976)
chr2 (77-249)||(33093317-33093490)
chr2 (17-147)||(43460823-43460961)
chr2 (83-244)||(4536528-4536685)
chr2 (15-65)||(44228609-44228659)
chr2 (27-80)||(14378219-14378272)
chr2 (79-189)||(16316718-16316827)
chr2 (24-144)||(24775242-24775373)
chr2 (83-147)||(43388695-43388759)
chr2 (83-200)||(10580894-10581012)
chr2 (13-122)||(29795156-29795276)
chr2 (83-121)||(34225826-34225864)
chr2 (83-200)||(1360175-1360291)
chr2 (28-80)||(36360347-36360399)
chr2 (83-147)||(41984468-41984534)
chr2 (31-80)||(1381867-1381916)
chr2 (156-244)||(29795300-29795388)
chr2 (11-80)||(37106992-37107061)
chr2 (83-120)||(42969967-42970004)
chr2 (156-200)||(6591963-6592007)
chr2 (107-147)||(25332620-25332660)
chr2 (28-80)||(40987254-40987306)
[»] chr3 (62 HSPs)
chr3 (11-122)||(26965463-26965585)
chr3 (14-244)||(37225553-37225793)
chr3 (23-200)||(46362977-46363165)
chr3 (28-121)||(53716082-53716184)
chr3 (11-122)||(34059943-34060063)
chr3 (11-145)||(38457513-38457658)
chr3 (11-147)||(647547-647694)
chr3 (83-200)||(3000751-3000868)
chr3 (11-118)||(790152-790270)
chr3 (83-200)||(27027732-27027848)
chr3 (11-200)||(43580474-43580677)
chr3 (83-200)||(54933241-54933359)
chr3 (83-144)||(4391958-4392019)
chr3 (94-200)||(22730924-22731029)
chr3 (83-200)||(83295-83410)
chr3 (156-251)||(13485915-13486010)
chr3 (28-121)||(42791380-42791477)
chr3 (28-122)||(25061771-25061874)
chr3 (83-200)||(15514763-15514880)
chr3 (11-118)||(19552611-19552730)
chr3 (77-147)||(44645389-44645461)
chr3 (14-121)||(35239438-35239556)
chr3 (14-147)||(44854365-44854508)
chr3 (83-122)||(1340967-1341006)
chr3 (83-122)||(36771614-36771653)
chr3 (83-147)||(43687919-43687985)
chr3 (14-115)||(2567970-2568082)
chr3 (10-115)||(2662446-2662562)
chr3 (83-124)||(27039401-27039442)
chr3 (83-245)||(43169288-43169451)
chr3 (83-200)||(20512532-20512651)
chr3 (94-200)||(32303952-32304059)
chr3 (83-200)||(50420258-50420373)
chr3 (83-147)||(2988646-2988712)
chr3 (83-122)||(27483231-27483270)
chr3 (83-147)||(36541542-36541608)
chr3 (83-197)||(41287078-41287193)
chr3 (83-122)||(43599868-43599907)
chr3 (11-78)||(44648365-44648432)
chr3 (157-200)||(44648512-44648555)
chr3 (83-147)||(54261466-54261532)
chr3 (83-145)||(5244638-5244700)
chr3 (83-120)||(16240654-16240691)
chr3 (83-141)||(25722497-25722557)
chr3 (83-144)||(35099404-35099465)
chr3 (156-193)||(35239392-35239429)
chr3 (28-65)||(43736842-43736879)
chr3 (83-119)||(4476398-4476434)
chr3 (11-63)||(5244730-5244782)
chr3 (156-200)||(19552539-19552583)
chr3 (156-200)||(25061703-25061747)
chr3 (28-80)||(27483165-27483217)
chr3 (83-119)||(31291011-31291047)
chr3 (156-200)||(31291074-31291118)
chr3 (156-200)||(34059875-34059919)
chr3 (156-200)||(36771677-36771721)
chr3 (28-80)||(38165633-38165685)
chr3 (210-250)||(40049081-40049121)
chr3 (83-119)||(42740302-42740338)
chr3 (11-79)||(42857046-42857114)
chr3 (212-244)||(48169401-48169433)
chr3 (11-51)||(50420380-50420420)
[»] chr5 (39 HSPs)
chr5 (83-200)||(4742304-4742421)
chr5 (83-200)||(4751568-4751685)
chr5 (11-82)||(4967446-4967517)
chr5 (11-244)||(166604-166847)
chr5 (83-200)||(38982183-38982299)
chr5 (11-121)||(31889796-31889917)
chr5 (11-196)||(15400174-15400370)
chr5 (11-80)||(14980006-14980075)
chr5 (84-200)||(12992063-12992176)
chr5 (84-200)||(13066712-13066827)
chr5 (11-122)||(12167565-12167688)
chr5 (28-122)||(16886152-16886250)
chr5 (83-200)||(34171163-34171278)
chr5 (14-121)||(4011618-4011736)
chr5 (16-142)||(17674264-17674393)
chr5 (83-200)||(33585011-33585129)
chr5 (83-200)||(42329582-42329700)
chr5 (85-200)||(4371362-4371476)
chr5 (77-200)||(27810345-27810467)
chr5 (27-147)||(39059856-39059987)
chr5 (11-80)||(43257815-43257884)
chr5 (83-200)||(793642-793760)
chr5 (83-147)||(4833669-4833735)
chr5 (77-147)||(29044770-29044841)
chr5 (83-122)||(36783431-36783470)
chr5 (84-193)||(32690770-32690878)
chr5 (83-143)||(27652357-27652419)
chr5 (156-244)||(7731703-7731790)
chr5 (77-118)||(8961066-8961107)
chr5 (156-244)||(14980149-14980237)
chr5 (83-144)||(28640136-28640197)
chr5 (156-197)||(29051622-29051663)
chr5 (11-80)||(34919864-34919933)
chr5 (11-80)||(36660554-36660623)
chr5 (83-132)||(1513043-1513094)
chr5 (156-200)||(7388291-7388335)
chr5 (210-250)||(8755530-8755570)
chr5 (83-119)||(33693810-33693846)
chr5 (83-119)||(41845344-41845380)
[»] scaffold0119 (1 HSPs)
scaffold0119 (14-193)||(1548-1737)
[»] scaffold0238 (1 HSPs)
scaffold0238 (11-195)||(15995-16188)
[»] scaffold0519 (1 HSPs)
scaffold0519 (83-200)||(7738-7852)
[»] scaffold0886 (1 HSPs)
scaffold0886 (94-200)||(4158-4263)
[»] scaffold0003 (1 HSPs)
scaffold0003 (83-200)||(321724-321842)
[»] scaffold0580 (2 HSPs)
scaffold0580 (14-80)||(1702-1768)
scaffold0580 (14-80)||(9441-9507)
[»] scaffold0047 (1 HSPs)
scaffold0047 (83-147)||(70491-70557)
[»] scaffold0072 (1 HSPs)
scaffold0072 (14-118)||(12040-12154)
[»] scaffold0189 (1 HSPs)
scaffold0189 (79-200)||(13093-13213)
[»] scaffold0007 (1 HSPs)
scaffold0007 (83-143)||(158154-158214)


Alignment Details
Target: scaffold0194 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 8346 - 8002
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaattaaagttgctttgaaaattgtgtgaga 110  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8346 cacagattaaaaaatggaatgaaataatcattggatataaggcttttactaaactgcccttgctttataaaattaaagttgctttgaaaattgtgtgaga 8247  T
Q  111 gaaaagttggagtactttttgaggttaaagttggaagnnnnnnnn-ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnn 209  Q
    |||||||||||||| |||||||||||||||||| |||         |||||||||||||  |||| |||||||||||||||||| ||||||             
T  8246 gaaaagttggagtattttttgaggttaaagttgaaagaaaaaaaaattaaagttgtattgaaaatgtaaattgacattcattttgaaacaattttttttt 8147  T
Q  210 ---------gctaaagtgacactgattttaaaacagagggagtaataaatacattgcaaaatatatgtaatgaatggggttcgaactcagaatatttttc 300  Q
             ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8146 tttttttttgctaaagtgacactgattttaaaacggagggagtaataaatacattgcaaaatatatgtaatgattggggttcgaactcagaatatttttc 8047  T
Q  301 tatttatttgtctttgtgctttgtttgagagtttggtgtagaagg 345  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  8046 tatttatttgcctttgtgctttgtttgagagtttggtgtagaagg 8002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 32258910 - 32258720
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaattaaagttgctttgaaaattgtgtgaga 110  Q
    |||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32258910 cacagattaagaaatcgattgaaataatcattggatataacgcttttactaaactgcccttgctttataaaattaaagttgcattgaaaattgtgtgaga 32258811  T
Q  111 g-aaaagttggagta-ctttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    | |||||||||||||  ||||| ||||||||||||||||        |||||||||||||  |||| |||| ||||||||||||| ||||||    
T  32258810 gaaaaagttggagtattttttttaggttaaagttggaag-aaaaaaattaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 32258720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 19689813 - 19689988
Alignment:
Q  22 aaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaattaaagttgctttgaaaattgtgtgagagaaaagttgga 121  Q
    |||| |||||||||||| ||| ||||||||  ||||||||||||||  ||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  19689813 aaatggaatgaaataattattagatataacaattttactaaactgctattgttttataaaattaaagttgtattgacaattgtgtgagagaaaagttgga 19689912  T
Q  122 gtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||| ||||| || |||||||||||||         |||||||||||||||||| |||| | ||||||||||||||||||    
T  19689913 gtatttttttagattaaagttggaagaaaata---taaagttgtattagaaatgtaaagtaacattcattttaaaacaa 19689988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 31275679 - 31275796
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||||||||||| ||||||||||||| || |||||| ||||||||||||        ||||||||||||| ||||| |||| ||    
T  31275679 ttaaagttgcattgaaaattgtgtgagaaaaaagttggagtatttattgagggtaaagttggaagaaaaaaaattaaagttgtattggaaatgtaaagtg 31275778  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||| ||||||    
T  31275779 acattcattttgaaacaa 31275796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 12828653 - 12828835
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaaattgtgtgagagaaaag 116  Q
    ||||||||||||||| || ||||| ||||||||||||||||||| |||||||| |           |||||||||| |||||||||||||||||||||||    
T  12828653 aatgaaataatcattagacataacacttttactaaactgcccttactttataagaaaaagacaagcttaaagttgcattgaaaattgtgtgagagaaaag 12828752  T
Q  117 ttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||| |||| || |||||| ||||||||||||        ||||||||||||| ||||| |||| ||| ||||||||| ||||||    
T  12828753 ttgaagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattggaaatgtaaagtgaaattcattttgaaacaa 12828835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 29915655 - 29915539
Alignment:
Q  84 taaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattga 183  Q
    ||||||||| ||| ||||||||||||||||||||||||||| || |||||| ||||||||||||        ||||||||||||| ||||| |||| |||    
T  29915655 taaagttgcattggaaattgtgtgagagaaaagttggagtatttattgagggtaaagttggaagaaaaaaaattaaagttgtattggaaatgtaaagtga 29915556  T
Q  184 cattcattttaaaacaa 200  Q
    |||||||||| ||||||    
T  29915555 cattcattttgaaacaa 29915539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 26669056 - 26669245
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaaatt 102  Q
    ||||||| ||||  ||||||||||| ||||||||||||| |||||||||| ||||||| ||||||           |||||||||||||| |||||||||    
T  26669056 agattaagaaatataatgaaataattattggatataacgtttttactaaattgcccttactttataagaaaaagacaaaattaaagttgcattgaaaatt 26669155  T
Q  103 gtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatttt 193  Q
     |||||||||||||||||||   || |||||| |||||||||| |        ||||||||||||| |||||||||| |||||||||||||    
T  26669156 atgtgagagaaaagttggagattttattgaggataaagttggatg-acaaaaattaaagttgtattggaaatataaagtgacattcatttt 26669245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 8052457 - 8052343
Alignment:
Q  84 taaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattga 183  Q
    ||||||||| |||||||||||| ||||||| |||||||||| || |||||| |||| |||| ||        |||||||||||||||||||||||| |||    
T  8052457 taaagttgcattgaaaattgtgggagagaatagttggagtatttattgagggtaaaattgggagaaaaaa--ttaaagttgtattagaaatataaagtga 8052360  T
Q  184 cattcattttaaaacaa 200  Q
    |||||||||||||||||    
T  8052359 cattcattttaaaacaa 8052343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 29927405 - 29927205
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    ||||||||||||||| |||||||||||||||| || ||||| ||||||||||  |  |||| ||||||           ||| |||||||||| ||||||    
T  29927405 cacagattaaaaaatagaatgaaataatcattagacataacacttttactaacatatccttactttataagaaaaagacaaacttaaagttgcattgaaa 29927306  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaaca 199  Q
    | |   ||||||||||||||||||| || |||||| ||||||||||||        ||||||||||||| ||||| |||| ||||||||||||| |||||    
T  29927305 actacatgagagaaaagttggagtatttattgagggtaaagttggaagaaaaaaaattaaagttgtattggaaatgtaaagtgacattcattttgaaaca 29927206  T
Q  200 a 200  Q
    |    
T  29927205 a 29927205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 17345175 - 17345290
Alignment:
Q  86 aagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattga 183  Q
    ||||||| |||||||||||||||||  |||||||||||||| || |||||| ||||||||||||        ||||||||||||||||||| |||| |||    
T  17345175 aagttgcattgaaaattgtgtgagagagaaaagttggagtatttattgagggtaaagttggaag-aaaaatattaaagttgtattagaaatgtaaagtga 17345273  T
Q  184 cattcattttaaaacaa 200  Q
     ||||||||||||||||    
T  17345274 tattcattttaaaacaa 17345290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 1924646 - 1924751
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataa-----------aattaaagttgctttgaaaattgtgtgagagaaaag 116  Q
    ||||||||||||||||||||||||| |||||||||||| | ||| ||||||||           |||||||||||| |||||||||||||||||||||||    
T  1924646 aatgaaataatcattggatataacgtttttactaaacttctcttactttataaggaaaatacaaaattaaagttgcattgaaaattgtgtgagagaaaag 1924745  T
Q  117 ttggag 122  Q
    ||||||    
T  1924746 ttggag 1924751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 34576660 - 34576542
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| |||||||||||||||||||  ||||||| |||| || |||||| ||||||||||||        ||||||||||||| ||||| ||||     
T  34576660 ttaaagttgcattgaaaattgtgtgagagagaaaagttgaagtatttattgaggataaagttggaag-aaaaaaattaaagttgtattggaaatgtaaaa 34576562  T
Q  181 tgacattcattttaaaacaa 200  Q
    ||| ||||||||||||||||    
T  34576561 tgatattcattttaaaacaa 34576542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 4123899 - 4124009
Alignment:
Q  89 ttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattc 188  Q
    |||| ||||||||||||||| ||||||||||||||| || |||||| |||||||| |||        |||||||||||||| |||| |||| ||||||||    
T  4123899 ttgcattgaaaattgtgtgaaagaaaagttggagtatttattgagggtaaagttgaaag-aaaaaaattaaagttgtattaaaaatgtaaagtgacattc 4123997  T
Q  189 attttaaaacaa 200  Q
    ||||| ||||||    
T  4123998 attttgaaacaa 4124009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 11785135 - 11785205
Alignment:
Q  77 ataaaattaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    ||||| |||||||||  ||||||||||||||||||||||||| || || || |||||| ||||||||||||    
T  11785135 ataaatttaaagttgtattgaaaattgtgtgagagaaaagttagaatatttattgagggtaaagttggaag 11785205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 1924774 - 1924862
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    |||||||||||||  |||| |||| ||||||||||||||||||||         |||||||||||||| ||||| ||||||||||||||    
T  1924774 ttaaagttgtattgaaaatgtaaaatgacattcattttaaaacaaatttttttggctaaagtgacactcattttgaaacagagggagta 1924862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 30627205 - 30627145
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttg 143  Q
    |||||||||| ||||||||||| ||||||||||||| ||||| || |||||| ||||||||    
T  30627205 ttaaagttgcattgaaaattgtttgagagaaaagtttgagtatttattgagggtaaagttg 30627145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 26189624 - 26189558
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtg--agagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| ||||||||||||||  |||||||| |||||||| || |||||| ||||||||||||    
T  26189624 ttaaagttgcattgaaaattgtgtgtgagagaaaaattggagtatttattgagggtaaagttggaag 26189558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 29915740 - 29915683
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcc 68  Q
    |||| ||||| ||||||||||||||||| ||| || ||||| ||||||||||||||||    
T  29915740 cacatattaagaaattgaatgaaataataattagaaataacacttttactaaactgcc 29915683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 4132085 - 4132129
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||    
T  4132085 ttaaagttgtattaaaaatgtaaagtgacattcattttaaaacaa 4132129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 4131989 - 4132030
Alignment:
Q  89 ttgctttgaaaattgtgtgagagaaaagttggagtacttttt 130  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  4131989 ttgcattgaaaattgtgtgaaagaaaagttggagtatttttt 4132030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 10494803 - 10494916
Alignment:
Q  86 aagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgaca 185  Q
    ||||||| ||||||||||| |||||||||||||||| || || ||  ||  ||||||| |||        ||||||||| ||| ||||| |||| |||||    
T  10494803 aagttgcattgaaaattgtatgagagaaaagttggactatttattttgggcaaagttgaaagaaaaaaa-ttaaagttgaattggaaatgtaaactgaca 10494901  T
Q  186 ttcattttaaaacaa 200  Q
    |||||||||||||||    
T  10494902 ttcattttaaaacaa 10494916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 23936622 - 23936684
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| ||||||||||||  ||||||| |||||||||  | |||||| ||||||||||||    
T  23936622 ttaaagttgcattgaaaattgtg--agagaaaggttggagtatatattgagggtaaagttggaag 23936684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 6143126 - 6143082
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  6143126 ttaaagttgaattggaaatgtaaaatgacattcattttaaaacaa 6143082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 23936538 - 23936598
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgccctt 71  Q
    |||| ||||| |||| |||||||||||||||| ||||||||  ||||||| || |||||||    
T  23936538 cacatattaagaaatggaatgaaataatcattagatataacatttttactgaattgccctt 23936598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 50158276 - 50158454
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaattaaagttgctttgaaaattgtgtgagagaa 113  Q
    ||||||| ||||  |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||    
T  50158276 agattaagaaatataatgcaataatcattggatataacacttttactaaacttcccttgctttataaaattaaagttgcatt-aaaattgtgtgagagaa 50158374  T
Q  114 aagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatttt 193  Q
    ||||||||| | ||||||||||||||||||||||        |||||||||||||  |||| |||| |||||||||||||    
T  50158375 aagttggagaattttttgaggttaaagttggaagaaaaaaaattaaagttgtattgaaaatgtaaagtgacattcatttt 50158454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 1429059 - 1428865
Alignment:
Q  16 attaaaaaattgaatgaaataatcattggatataacgcttttactaaactgccc-ttgctttat-----------aaaattaaagttgctttgaaaattg 103  Q
    ||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||| || ||||||           ||| |||||||||  ||| ||||||    
T  1429059 attaagaaattgaatgaaataattattagatataacacttttactaaactgccctttactttataagaaaaggacaaacttaaagttgaattggaaattg 1428960  T
Q  104 tgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaaca 199  Q
    ||||||||||||||| ||||| || |||||| |||||||| |||        || |||||||||||||||| |||| |||||||||||||||||||    
T  1428959 tgtgagagaaaagtttgagtatttattgagggtaaagttgcaagaaaaaaattt-aagttgtattagaaatgtaaagtgacattcattttaaaaca 1428865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 247
Target Start/End: Complemental strand, 12002360 - 12002197
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||||||||||| ||||||||||||| || |||| | ||||| ||||||        ||||||||||||| ||||| |||| ||    
T  12002360 ttaaagttgcattgaaaattgtgtgagaaaaaagttggagtatttattgaaggtaaagctggaag-aaaaaaattaaagttgtattggaaatgtaaaatg 12002262  T
Q  183 acattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagtaata 247  Q
    ||||||||||||||||||         ||||||  |||||| |||||||||| ||||||||||||    
T  12002261 acattcattttaaaacaattttttttagctaaaacgacactcattttaaaacggagggagtaata 12002197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 52403672 - 52403527
Alignment:
Q  12 acagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaaa 100  Q
    ||||||||| |||| ||||||||||||||||||||||||| || ||| |||||||||||| ||||||           ||||||||||||||  ||||||    
T  52403672 acagattaagaaatggaatgaaataatcattggatataacactgttattaaactgcccttactttataaggaaaagacaaaattaaagttgcactgaaaa 52403573  T
Q  101 ttgtgtgagagaaaagttggagtactttttgaggttaaagttggaa 146  Q
    || ||||||||| ||||| ||||| || |||||| |||||||||||    
T  52403572 ttatgtgagagagaagtttgagtatttattgagggtaaagttggaa 52403527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 6332364 - 6332164
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||| ||||| ||||||||||||||||||||| || ||||| |||||||||||||||| ||| |||||           |||  ||||||| | ||||||    
T  6332364 cacaaattaagaaattgaatgaaataatcattagacataacacttttactaaactgcctttgttttatatgaaaaagacaaacataaagttacattgaaa 6332265  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaaca 199  Q
    ||||||||||| ||||||||||||| || || ||  |||||||| |||        |||||||||| ||| |||| |||| |||||||||||||||||||    
T  6332264 attgtgtgagaaaaaagttggagtatttattaagagtaaagttgaaagaaaaaaaattaaagttgtgttaaaaatgtaaagtgacattcattttaaaaca 6332165  T
Q  200 a 200  Q
    |    
T  6332164 a 6332164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 11650254 - 11650056
Alignment:
Q  12 acagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaaa 100  Q
    ||||||||| |||||||||||||||| |||| ||||||    |||||||||||||||||| ||||| || |           |||||||||| ||| |||    
T  11650254 acagattaagaaattgaatgaaataaccattagatatagtatttttactaaactgcccttactttaaaagaaaaagacaaacttaaagttgcattggaaa 11650155  T
Q  101 ttgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||||||||| |||||||| || |||||| ||||||||||||        |||||||||||||  |||| |||| ||||||||||||| ||||||    
T  11650154 ttgtgtgagagaaaaattggagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 11650056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 15698783 - 15698905
Alignment:
Q  77 ataaaattaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatat 176  Q
    ||||| ||||||||   ||||||||| ||||||||||||||| ||||| || |||||  ||||||||||||        ||||||||||||| |||||||    
T  15698783 ataaacttaaagttctattgaaaattatgtgagagaaaagtttgagtatttattgagagtaaagttggaagaagaaaa-ttaaagttgtattggaaatat 15698881  T
Q  177 aaattgacattcattttaaaacaa 200  Q
    ||| ||||||||||||||||||||    
T  15698882 aaagtgacattcattttaaaacaa 15698905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 254949 - 255068
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgag--agaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| ||||||||||||||||  ||||||||||||||| || |||||| ||||||||||||        ||||||||| ||| ||||| ||||     
T  254949 ttaaagttgcattgaaaattgtgtgagtgagaaaagttggagtatttattgagggtaaagttggaagaaaaaaaattaaagttgcattggaaatgtaaag 255048  T
Q  181 tgacattcattttaaaacaa 200  Q
     |||||||||||| ||||||    
T  255049 cgacattcattttgaaacaa 255068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 24040995 - 24041100
Alignment:
Q  27 gaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaaattgtgtgagagaaaa 115  Q
    |||||||||||||||| || ||||| ||||||||||||||||||| ||||||           ||| |||||||||| ||||||||||||||||||||||    
T  24040995 gaatgaaataatcattagacataacacttttactaaactgcccttactttataagaaaaagacaaacttaaagttgcattgaaaattgtgtgagagaaaa 24041094  T
Q  116 gttgga 121  Q
    ||||||    
T  24041095 gttgga 24041100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 672319 - 672383
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    ||||| |||| ||||||||||||||||||||||||| ||||| || |||||| ||||||||||||    
T  672319 ttaaatttgcattgaaaattgtgtgagagaaaagttagagtatttattgagggtaaagttggaag 672383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 17806413 - 17806575
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    ||||| |||| ||||||||||| ||||||||||||||||||| || |||| | |||| |||||||        ||||||||||||| ||||| ||||  |    
T  17806413 ttaaaattgcattgaaaattgtatgagagaaaagttggagtatttattgaaggtaaaattggaag-taaaaaattaaagttgtattggaaatgtaaagcg 17806511  T
Q  183 acattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagtaat 246  Q
    ||| ||||||||||||||         |||||||||||||| ||||| |||| ||| |||||||    
T  17806512 acactcattttaaaacaattttttttggctaaagtgacactcattttgaaacggagtgagtaat 17806575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 40719135 - 40719020
Alignment:
Q  77 ataaaattaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatat 176  Q
    ||||| |||||||||  |||| |||||||| ||| ||||||||||||| || |||| | ||||||||||||        |||||||||||||| |||| |    
T  40719135 ataaatttaaagttgtattgagaattgtgtaagaaaaaagttggagtatttattgaaggtaaagttggaag-aaaaaaattaaagttgtattaaaaatgt 40719037  T
Q  177 aaattgacattcatttt 193  Q
    |||||||||||||||||    
T  40719036 aaattgacattcatttt 40719020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 84604 - 84693
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagtaa 245  Q
    ||||||||||||| ||||| |||| ||||||||||||||||||||         |||||||||||||| | |||||||| ||||||||||    
T  84604 ttaaagttgtattggaaatgtaaagtgacattcattttaaaacaatttttttttgctaaagtgacactcaatttaaaacggagggagtaa 84693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 84473 - 84542
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||  |||||||||||||||||||| || ||||| ||||||||||| || |||| ||||||||    
T  84473 cacagattaaggaattgaatgaaataatcattagacataacacttttactaaaatgtccttactttataa 84542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 17919858 - 17919967
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||||||||||| ||||||| |||||  | |||||| ||||||||||||        ||||||||||||| ||||| |||| ||    
T  17919858 ttaaagttgcattgaaaattgtgtgagaaaaaagttagagtatatattgagggtaaagttggaag-aaaaaaattaaagttgtattggaaatgtaaagtg 17919956  T
Q  183 acattcatttt 193  Q
    | |||||||||    
T  17919957 atattcatttt 17919967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 28751363 - 28751510
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaa 99  Q
    ||||||||||  |||  ||| ||||||||||| || |||||  |||||||||||||||||| |||||||| |           |||||||| | ||||||    
T  28751363 cacagattaaggaatgaaataaaataatcattagacataacatttttactaaactgcccttactttataagaaaaggacaaacttaaagttacattgaaa 28751462  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||| |||||||||||| ||||| || |||||| ||||||||||||    
T  28751463 attgtgcgagagaaaagtttgagtatttattgagggtaaagttggaag 28751510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 43929881 - 43929683
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttata-----------aaattaaagttgctttgaaa 99  Q
    |||| ||||| ||||||||||||||||||||| || ||||| ||||||||| ||| || || |||||||           || |||||||||  | ||||    
T  43929881 cacaaattaagaaattgaatgaaataatcattagacataacacttttactatacttccattactttataagaaaaagactaacttaaagttgtatcgaaa 43929782  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaaca 199  Q
    ||| ||||||||||||| ||||||| || |||||| ||||||||||||        ||||||||||||| ||||   ||||||||||||||||| |||||    
T  43929781 attatgtgagagaaaag-tggagtatttattgagggtaaagttggaag-gaaaaaattaaagttgtattggaaactgaaattgacattcattttgaaaca 43929684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 48259818 - 48259887
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||  ||| ||||||||||||| || || ||||| |||||| |||||||||||||||||||||    
T  48259818 cacagattaaggaatagaatgaaataatcgttagacataacacttttattaaactgcccttgctttataa 48259887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 50349828 - 50349881
Alignment:
Q  27 gaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    |||||||||||||||| || ||||| ||||||||||||||||||| ||||||||    
T  50349828 gaatgaaataatcattagacataacacttttactaaactgcccttactttataa 50349881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 1430491 - 1430547
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgc 67  Q
    |||||||||| ||||| ||||||||||| ||| |||||||| |||||||||||||||    
T  1430491 cacagattaagaaatttaatgaaataataattagatataacacttttactaaactgc 1430547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 5317616 - 5317679
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| |||||||||||| ||||||||||||| |||| || |||||| ||||||||||||    
T  5317616 ttaaagttgcattgaaaattgtg-gagagaaaagttgtagtatttattgagggtaaagttggaag 5317679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 26252234 - 26252116
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagag--aaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| ||||||||||||||||||  ||||||| ||||| || || ||| ||||||||||||        || |||||||||| ||||| ||||     
T  26252234 ttaaagttgcattgaaaattgtgtgagagaaaaaagttagagtatttattaagggtaaagttggaagaaaaaaattt-aagttgtattggaaatgtaaag 26252136  T
Q  181 tgacattcattttaaaacaa 200  Q
    ||||||||||||| ||||||    
T  26252135 tgacattcattttgaaacaa 26252116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 30006327 - 30006205
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaa 99  Q
    ||||||||||  |||||||||||||||||||| || ||||| || |||||||| ||| ||| |||||||| |           |||||||||| ||||||    
T  30006327 cacagattaatgaattgaatgaaataatcattagacataacactattactaaattgctcttactttataagaaaaagataaatttaaagttgcattgaaa 30006228  T
Q  100 attgtgtgagagaaaagttggag 122  Q
    ||||| |||||||||||||||||    
T  30006227 attgtttgagagaaaagttggag 30006205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 44582816 - 44582927
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| ||||||||| |||||||  |||||||||||||| || |||||| ||||||||||||        ||||||||||||| ||||| ||||     
T  44582816 ttaaagttgcattgaaaattatgtgagatagaaaagttggagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattggaaatgtaaag 44582914  T
Q  181 tgacattcatttt 193  Q
    ||||||| |||||    
T  44582915 tgacatttatttt 44582927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 50349901 - 50349953
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggt 135  Q
    |||||||||| ||||||||||||||||||||||||| ||||| || |||||||    
T  50349901 ttaaagttgcattgaaaattgtgtgagagaaaagtttgagtatttattgaggt 50349953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 5854262 - 5854327
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaa 146  Q
    |||| ||||| |||||||||||||||||  |||||||||||||| || |||||| |||||||||||    
T  5854262 ttaaggttgcattgaaaattgtgtgagatcgaaaagttggagtatttattgaggataaagttggaa 5854327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 43755142 - 43755104
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttgga 121  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  43755142 ttaaagttgttttgaaaattgtgtgagagaaaagttgga 43755104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 45377188 - 45377297
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||| | |||||||||||| ||||||||||||||||||  | |||||| ||||||||| ||         |||||||||||| ||||| |||| ||    
T  45377188 ttaaagtttcattgaaaattgtgcgagagaaaagttggagtatctattgagggtaaagttgggagaaaaaaag-taaagttgtattggaaatgtaaagtg 45377286  T
Q  183 acattcatttt 193  Q
    |||||||||||    
T  45377287 acattcatttt 45377297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 9552440 - 9552528
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    ||||||||||||| ||||| |||| ||||||||||||||||||||           |||||||||||| ||||||||| ||||||||||    
T  9552440 ttaaagttgtattggaaatgtaaaatgacattcattttaaaacaatttttttttattaaagtgacactcattttaaaatagagggagta 9552528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 1430623 - 1430666
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaaca 199  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||    
T  1430623 ttaaagttgtattagaaatgtaaagtgacattcattttgaaaca 1430666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 28200260 - 28200326
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||  |||||||||||| ||||  |||||||||||||| || |||||| ||||||||||||    
T  28200260 ttaaagttgtattgaaaattgtgcgagagagaaaagttggagtatttattgagggtaaagttggaag 28200326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 43105562 - 43105609
Alignment:
Q  16 attaaaaaattgaatgaaataatcattggatataacgcttttactaaa 63  Q
    ||||| ||||||||||||||||||||| || ||||| |||||||||||    
T  43105562 attaagaaattgaatgaaataatcattagacataacacttttactaaa 43105609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 2459120 - 2459058
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||  ||||||||||||  ||||||||||| ||||| || |||||| ||||||||||||    
T  2459120 ttaaagttgtattgaaaattgtg--agagaaaagtttgagtatttgttgagggtaaagttggaag 2459058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 40060861 - 40060930
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    |||| ||||| ||||  ||||||||||| ||| || ||||| ||||||||||| ||||||| ||||||||    
T  40060861 cacatattaagaaatgaaatgaaataatgattagacataacacttttactaaattgcccttactttataa 40060930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 45749470 - 45749523
Alignment:
Q  27 gaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    |||| ||||||||||| || ||||| |||||||||||| |||||| ||||||||    
T  45749470 gaataaaataatcattagacataacacttttactaaaccgcccttactttataa 45749523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 10690910 - 10690966
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgc 67  Q
    |||| ||||| ||||  ||||||||||||||| ||||||||  ||||||||||||||    
T  10690910 cacatattaagaaatgaaatgaaataatcattagatataacatttttactaaactgc 10690966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 10690993 - 10691029
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttg 119  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  10690993 ttaaagttgcattgaaaattgtgtgagataaaagttg 10691029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 37437442 - 37437474
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaa 115  Q
    |||||||||| ||||||||||||||||||||||    
T  37437442 ttaaagttgcattgaaaattgtgtgagagaaaa 37437474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 38132278 - 38132322
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||    
T  38132278 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 38132322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 44024650 - 44024595
Alignment:
Q  94 ttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||||||||||||  ||||||| |||| || |||||| ||||||||||||    
T  44024650 ttgaaaattgtgtgagagagaaaagttgaagtatttattgagggtaaagttggaag 44024595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 44583814 - 44583770
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    |||||||||||||| |||| |||  ||||||||||||||||||||    
T  44583814 ttaaagttgtattaaaaatgtaaggtgacattcattttaaaacaa 44583770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 48259964 - 48260008
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||    
T  48259964 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 48260008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 41905890 - 41906132
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||||||||| ||||  | |||||||||||||||||||||||||||||||||||||||||| ||||||           |||||||||||||| ||||||    
T  41905890 cacagattaagaaatgaactgaaataatcattggatataacgcttttactaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 41905989  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaaca 199  Q
    ||||||| ||||||||||||||||| || |||||| ||||||||||||        ||||||||||||||||||| |||| ||||||| |||||||||||    
T  41905990 attgtgtaagagaaaagttggagtatttattgagg-taaagttggaag-agaaaacttaaagttgtattagaaatgtaaagtgacatttattttaaaaca 41906087  T
Q  200 annnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    |         |||||||||||| | |||||||||||||| |||||    
T  41906088 aatttttttagctaaagtgacattcattttaaaacagagtgagta 41906132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 247
Target Start/End: Complemental strand, 17869352 - 17869189
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||||||||||||||||| | ||||| || |||||| ||||||||||||        ||||||||| ||| ||||| |||| ||    
T  17869352 ttaaagttgcattgaaaattgtgtgagagaaaagattgagtatttattgaggataaagttggaag-gaaaaaattaaagttgcattggaaatgtaaaatg 17869254  T
Q  183 acattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagtaata 247  Q
    ||||||||||| ||||||         |||||||||||||| |||||||||| ||||||||||||    
T  17869253 acattcattttgaaacaaatttttttcgctaaagtgacactcattttaaaacggagggagtaata 17869189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 18886843 - 18886722
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||||| ||| |||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||           |||||||||||||| ||||||    
T  18886843 cacagactaagaaatggaatgaaataatcattagatataacgcttttactaaactgcccttactttataaggaaaagacaaaattaaagttgcattgaaa 18886744  T
Q  100 attgtgtgagagaaaagttgga 121  Q
    ||||||||| ||||||||||||    
T  18886743 attgtgtgaaagaaaagttgga 18886722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 34002087 - 34002235
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttg-ctttataa-----------aattaaagttgctttgaa 98  Q
    |||||||||| ||||  |||||||||||||||||||||||| | ||| ||||||||| |||  ||||||||           |||||||||||| |||||    
T  34002087 cacagattaagaaatgaaatgaaataatcattggatataacacctttgctaaactgcactttactttataagaaaaagacaaaattaaagttgcattgaa 34002186  T
Q  99 aattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||    
T  34002187 aattgtgtgagagaaaagttggagtatttattgagggtaaagttggaag 34002235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 245
Target Start/End: Complemental strand, 40299019 - 40298801
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa--ttaaagttgctttgaaaattgtgtgagagaaaagttggagtac 125  Q
    ||||||||||| |||||| ||||| |||||||||||||||||  |    | | ||  |||||||| | |||||||||||||||||||||||||||||||     
T  40299019 aatgaaataataattggacataacacttttactaaactgcccaagaaaaagacaaacttaaagttacattgaaaattgtgtgagagaaaagttggagtat 40298920  T
Q  126 tttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactga 225  Q
    || |||||| ||||||||| ||        |||||||||||||  |||| |||| ||||||||||||| ||||||         |||||||||||||| |    
T  40298919 ttattgagggtaaagttgggag-aaaaaaattaaagttgtattgaaaatgtaaagtgacattcattttgaaacaattttttttggctaaagtgacactca 40298821  T
Q  226 ttttaaaacagagggagtaa 245  Q
    |||| |||| ||||||||||    
T  40298820 ttttgaaacggagggagtaa 40298801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 1103599 - 1103483
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||| | |||||||||||||||||||||||||| |||| || |||||| ||||||||||||        ||||||||||||| ||||| |||| ||    
T  1103599 ttaaagttacattgaaaattgtgtgagagaaaagttgaagtatttattgagggtaaagttggaag-aaaacaattaaagttgtattggaaatgtaaaatg 1103501  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||| ||||||    
T  1103500 acattcattttgaaacaa 1103483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 28044113 - 28044218
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaaattgtgtgagagaaaag 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||           |||||||||||||  ||||||||||||||||||||||     
T  28044113 aatgaaataatcattggatataacgtttttactaaactgcccttactttataagaaaaagacaaaattaaagttgtattgaaaattgtgtgagagaaaaa 28044212  T
Q  117 ttggag 122  Q
    ||||||    
T  28044213 ttggag 28044218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 3680878 - 3681077
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    ||||||||||||||| |||||||||||||||| || ||||  ||||||||||||||| ||| ||||||           ||| |||||||||| || |||    
T  3680878 cacagattaaaaaatggaatgaaataatcattagacataaaacttttactaaactgctcttactttataagaaaaagacaaatttaaagttgcatttaaa 3680977  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaaca 199  Q
    ||| ||||||||||||||| | ||| || || | | ||||||||||||        |||||||||||||  |||| |||| |||||||||||||||||||    
T  3680978 attctgtgagagaaaagttagtgtatttattaatggtaaagttggaag-aacaaaattaaagttgtattgaaaatgtaaagtgacattcattttaaaaca 3681076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 81 - 197
Target Start/End: Original strand, 19920308 - 19920423
Alignment:
Q  81 aattaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||||| |||||||||||| |||||||||||| ||||| || |||||| ||||||||  ||        ||||||||||||| ||||| ||||     
T  19920308 aattaaagttgcattgaaaattgtgcgagagaaaagtttgagtatttattgagggtaaagttgagag-aaaaaaattaaagttgtattggaaatgtaaag 19920406  T
Q  181 tgacattcattttaaaa 197  Q
    |||||||||||||||||    
T  19920407 tgacattcattttaaaa 19920423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 19906529 - 19906465
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| |||||||||||| ||||||||||||||| || || |||||| ||||||||||||    
T  19906529 ttaaagttgcattgaaaattgtgagagagaaaagttggaatatttattgagggtaaagttggaag 19906465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 5723117 - 5723058
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagtt 142  Q
    |||||||||| ||||||||||||||||||||||||| ||||| || |||||| |||||||    
T  5723117 ttaaagttgcattgaaaattgtgtgagagaaaagtttgagtatttattgagggtaaagtt 5723058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 42044016 - 42044082
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| |||||||||||||||||  |||||||||||||| || |||||| ||||||||||||    
T  42044016 ttaaagttgcattgaaaattgtgtgagagagaaaagttggagtatttattgagggtaaagttggaag 42044082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 244
Target Start/End: Complemental strand, 42121657 - 42121505
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||||| |||||||||||||||||         ||  ||||||||||||        ||||||||||||| |||||||||| ||    
T  42121657 ttaaagttgcattgaaaattgtttgagagaaaagttggag---------agagtaaagttggaagaaaaaaaattaaagttgtattggaaatataaagtg 42121567  T
Q  183 acattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    ||||||||||| ||||||         |||||||||||| | |||||||||| |||||||||    
T  42121566 acattcattttgaaacaatttttttttgctaaagtgacattcattttaaaacggagggagta 42121505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 33845448 - 33845509
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttgg 144  Q
    |||||||||| |||||||||||| |||| ||||||||||||| || |||||| |||||||||    
T  33845448 ttaaagttgcattgaaaattgtgcgagaaaaaagttggagtaattattgagggtaaagttgg 33845509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 43813455 - 43813543
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||         ||||||| |||||| |||||||||| |||| ||||    
T  43813455 ttaaagttgtattggaaatataaagtgacattcattttaaaacaaattttgttggctaaagcgacactcattttaaaacggaggtagta 43813543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 42259587 - 42259651
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| ||||||||| ||||||| ||||||| ||||| || |||||| ||||||||||||    
T  42259587 ttaaagttgcattgaaaattatgtgagacaaaagtttgagtatttattgagggtaaagttggaag 42259651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 22627392 - 22627431
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggag 122  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  22627392 ttaaagttgcattgaaaattgtgtgagagaaaagttggag 22627431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 30515090 - 30514972
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaa--gttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||  || |||||||| ||||||||||  ||||||||| || |||| | ||||||||||||        ||||||||||||| ||||| |||||    
T  30515090 ttaaagttgtatttaaaattgtctgagagaaaaaagttggagtatttattgaaggtaaagttggaagaaaaaaa-ttaaagttgtattggaaatgtaaat 30514992  T
Q  181 tgacattcattttaaaacaa 200  Q
    ||||||||||||| ||||||    
T  30514991 tgacattcattttgaaacaa 30514972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 31416788 - 31416906
Alignment:
Q  83 ttaaagttgctttgaaaattgtgt--gagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| |||||||||||||  ||||||||| ||| |||| || |||||| ||||||||||||        |||||||||||||  |||| ||||     
T  31416788 ttaaagttgcattgaaaattgtgtgagagagaaaaattgaagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattgaaaatgtaaag 31416886  T
Q  181 tgacattcattttaaaacaa 200  Q
    ||| ||||||||||||||||    
T  31416887 tgatattcattttaaaacaa 31416906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 32345872 - 32345938
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||  |||||||||||||||||  |||||||||||||| || |||||| ||||||||||||    
T  32345872 ttaaagttgtattgaaaattgtgtgagagagaaaagttggagtatttattgagggtaaagttggaag 32345938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 36447107 - 36447173
Alignment:
Q  83 ttaaagttgctttgaaaattgtgt--gagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| |||||||||||||  |||||||||||||||||| ||  ||||| ||||||||||||    
T  36447107 ttaaagttgcattgaaaattgtgtgagagagaaaagttggagtatttaatgaggataaagttggaag 36447173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 36447567 - 36447687
Alignment:
Q  12 acagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgcttt-----------ataaaattaaagttgctttgaaaa 100  Q
    ||||||||| |||| |||||||||||| | |||||||||| |||||| ||||||| | || ||||           |||||||||||||||  |||||||    
T  36447567 acagattaagaaatggaatgaaataattactggatataactcttttattaaactgtctttactttataagaaaaagataaaattaaagttgaattgaaaa 36447666  T
Q  101 ttgtgtgagagaaaagttgga 121  Q
    || ||||||||||||||||||    
T  36447667 ttatgtgagagaaaagttgga 36447687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 40207488 - 40207577
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagtaa 245  Q
    |||||||||||||| ||||||||| ||||||||||||| || |||         |||||||||||||| ||||| |||| ||||||||||    
T  40207488 ttaaagttgtattaaaaatataaaatgacattcattttgaagcaattttttttggctaaagtgacactcattttgaaacggagggagtaa 40207577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 26527435 - 26527548
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||| | | | ||||||||||||||| || |||||||||||||| ||||        |||||||||||||  |||| |||| |     
T  26527435 ttaaagttgcattgaaaattatttaacagaaaagttggagtatttattgaggttaaagttagaag-aaaaaaattaaagttgtattgaaaatgtaaaata 26527533  T
Q  183 acattcattttaaaa 197  Q
    |||||||||||||||    
T  26527534 acattcattttaaaa 26527548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 48838723 - 48838764
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagta 124  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  48838723 ttaaagttgcattgaaaattgtgtgagagaaaagtttgagta 48838764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 32873274 - 32873318
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||| ||||||| |||||||||| ||||||||||||||||||||    
T  32873274 ttaaaattgtattggaaatataaagtgacattcattttaaaacaa 32873318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 34733490 - 34733438
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||||||| || ||||| ||||||||||||| ||||| ||||||||    
T  34733490 aatgaaataatcattagacataacacttttactaaactacccttactttataa 34733438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 26963596 - 26963530
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| ||||||||| |||||||||  |||||||||||| |  |||||| ||||||||||||    
T  26963596 ttaaagttgcattgaaaattatgtgagagagaaaagttggagtattcattgagggtaaagttggaag 26963530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 19288405 - 19288495
Alignment:
Q  102 tgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatttt 193  Q
    |||| |||||||||||||||| | || |||||| ||||||| ||||        ||||||||||||||||||| |||| |||||||||||||    
T  19288405 tgtgagagagaaaagttggagaatttattgagggtaaagttagaagaaaaaaa-ttaaagttgtattagaaatgtaaagtgacattcatttt 19288495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 33056256 - 33056306
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttat 78  Q
    |||||||||||||||  | ||||| ||||||||||||||||||| ||||||    
T  33056256 aatgaaataatcattaaacataacacttttactaaactgcccttactttat 33056306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 39117526 - 39117591
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagaga-aaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| ||||||||||||||||||| ||| |||||||| |  |||||| ||| ||||||||    
T  39117526 ttaaagttgcattgaaaattgtgtgagagagaaaattggagtattcattgagggtaatgttggaag 39117591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 28044242 - 28044286
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    |||||||||||||  |||| |||| ||||||||||||||||||||    
T  28044242 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 28044286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 30833144 - 30833192
Alignment:
Q  95 tgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttg 143  Q
    |||||||||||||||| ||||||||||||| || |||| | ||||||||    
T  30833144 tgaaaattgtgtgagaaaaaagttggagtatttattgaaggtaaagttg 30833192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 32275247 - 32275203
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||||||||||||| |||| || |||||||||| ||||||    
T  32275247 ttaaagttgtattagaaatgtaaagtggcattcattttgaaacaa 32275203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 33056330 - 33056362
Alignment:
Q  90 tgctttgaaaattgtgtgagagaaaagttggag 122  Q
    ||| |||||||||||||||||||||||||||||    
T  33056330 tgcattgaaaattgtgtgagagaaaagttggag 33056362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 36447712 - 36447756
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    |||||||||||||  ||||||||| ||| ||||||||||||||||    
T  36447712 ttaaagttgtattgaaaatataaagtgatattcattttaaaacaa 36447756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 48838776 - 48838820
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    |||||||| ||||  ||||||||||||||||| ||||||||||||    
T  48838776 ttaaagttatattgaaaatataaattgacatttattttaaaacaa 48838820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 45903377 - 45903507
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaattaaagttgctttgaaaattgtgtgagagaa 113  Q
    ||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||| ||||||||||  ||||||||    
T  45903377 agattaagaaatagaatgaaataatcattggatataacgcttttattaaactgctcttactttattaaattaaagttgcattgaaaattggatgagagaa 45903476  T
Q  114 aagttggagtactttttgaggttaaagttgg 144  Q
    ||||  ||||||||||||||||| |||||||    
T  45903477 aagtcagagtactttttgaggtttaagttgg 45903507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 52732782 - 52732594
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaaatt 102  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||           |||||||||||||| |||||||||    
T  52732782 agattaaaaaatggaatgaaataatcattggatataacacttttactaaactgcccttactttataaggaaaagacaaaattaaagttgcattgaaaatt 52732683  T
Q  103 gtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||||||||||||          |||| ||||||||||||        ||||||||||||| ||||| |||| ||||||||||||||||||||    
T  52732682 gtgtgagagaaaagttgg---------ggagggtaaagttggaagaaaaaaaattaaagttgtattggaaatgtaaagtgacattcattttaaaacaa 52732594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 50072434 - 50072330
Alignment:
Q  22 aaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----aaaattaaagttgctttgaaaattgtgtgagagaaaag 116  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||     |||||||||||||| ||||||||||||||||| |||||    
T  50072434 aaatggaatgaaataatcattggatataacgtttttactaaactgcccttactttataagacaaaattaaagttgcattgaaaattgtgtgagaaaaaag 50072335  T
Q  117 ttgga 121  Q
    |||||    
T  50072334 ttgga 50072330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 44855438 - 44855298
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||           |||||||||||||| ||||||    
T  44855438 cacaaattaagaaatagaatgaaataatcattgaatataacgcttttactaaactgcccttactttataaggaaaagacaaaattaaagttgcattgaaa 44855339  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaag 140  Q
    |||||||||||||||||||||| || || |||||| |||||    
T  44855338 attgtgtgagagaaaagttggattatttattgagggtaaag 44855298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 51930759 - 51930649
Alignment:
Q  22 aaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaaattgtgtgaga 110  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||           |||||||||||||| |||||||||||||||||    
T  51930759 aaatggaatgaaataataattggatataacgcttttactaaactgcccttactttataagaaaatgacaaaattaaagttgcattgaaaattgtgtgaga 51930660  T
Q  111 gaaaagttgga 121  Q
    |||||||||||    
T  51930659 gaaaagttgga 51930649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 21045327 - 21045206
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    ||||||||||  ||| |||||||||||||||||||||||| ||||||| |||||||||||| ||||||           |||||||||||||| ||||||    
T  21045327 cacagattaaggaatggaatgaaataatcattggatataaggcttttattaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 21045228  T
Q  100 attgtgtgagagaaaagttgga 121  Q
    ||||||||||||||||||||||    
T  21045227 attgtgtgagagaaaagttgga 21045206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 31817157 - 31817279
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat------------aaaattaaagttgctttgaa 98  Q
    |||| ||||| |||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||||            |||||||||||||| |||||    
T  31817157 cacaaattaagaaatggaatgaaataatcattggatataacgtttttactaaacttcccttactttataagaaaaaatacaaaattaaagttgcattgaa 31817256  T
Q  99 aattgtgtgagagaaaagttgga 121  Q
    |||||||||||||||||||||||    
T  31817257 aattgtgtgagagaaaagttgga 31817279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 31987415 - 31987302
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||| || |||||||||||||||||| || |||||| ||||||||||||        ||||||||||||||||||| |||| ||    
T  31987415 ttaaagttgcattgaaaattatgcgagagaaaagttggagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattagaaatgtaaagtg 31987317  T
Q  183 acattcattttaaaa 197  Q
    |||||||||||||||    
T  31987316 acattcattttaaaa 31987302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 19849195 - 19849079
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||||||||||||||||||||||||| || |||||| ||||||||||||        ||||||||||||| ||| | |||| ||    
T  19849195 ttaaagttgcattgaaaattgtgtgagagaaaagttggagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattggaattgtaaagtg 19849097  T
Q  183 acattcattttaaaacaa 200  Q
    | ||||||||||||||||    
T  19849096 aaattcattttaaaacaa 19849079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 56422957 - 56423026
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | || ||||||||    
T  56422957 cacagattaagaaatcgaatgaaataatcattggatataacgcttttactaaactgtctttactttataa 56423026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 34360182 - 34360077
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaaattgtgtgagagaaaag 116  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| ||||||           ||| |||||||||| |||||||||||||||||||||||    
T  34360182 aatgaaataatcattagatataacacttttactaaactgcccttactttataagaaaaagacaaacttaaagttgcattgaaaattgtgtgagagaaaag 34360083  T
Q  117 ttggag 122  Q
    ||||||    
T  34360082 ttggag 34360077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 32140944 - 32141014
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaa 81  Q
    |||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||| | |||||||||    
T  32140944 cacagattaagaaattgaatgaaataatcattagacataacacttttactaaactgcccctactttataaa 32141014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 34096210 - 34096010
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||| ||||||||||  ||||||||||||||| ||  |||| ||||||||||| ||||||| ||||||           ||| |||||||| | ||||||    
T  34096210 cacaaattaaaaaatgaaatgaaataatcattagacttaacacttttactaaattgcccttactttataagaaaaagacaaacttaaagtttcattgaaa 34096111  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaaca 199  Q
    ||||||||||||||||||| || || || |||||| |||||||| ||         ||||| ||||||||||||| ||||||||||||| |||| |||||    
T  34096110 attgtgtgagagaaaagtttgaatatttattgagggtaaagttgaaaaaaaaaaaattaaaattgtattagaaatgtaaattgacattcgttttgaaaca 34096011  T
Q  200 a 200  Q
    |    
T  34096010 a 34096010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 37445837 - 37445655
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaaattgtgtgagagaaaag 116  Q
    ||||||||||||||| || ||||| ||||||||||||||||||| ||||||           ||| |||||||||| || |||||| ||||| ||||||     
T  37445837 aatgaaataatcattagacataacacttttactaaactgcccttactttataagaaaaagacaaatttaaagttgcattaaaaattatgtgaaagaaaaa 37445738  T
Q  117 ttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    || || || || |||||| ||||||||||||        |||||||||||||| |||| |||| ||||||||||||||||||||    
T  37445737 tttgaatatttattgagggtaaagttggaag-aaaaaaattaaagttgtattaaaaatgtaaaatgacattcattttaaaacaa 37445655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 47321258 - 47321139
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgag--agaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| |||||||||||| |||  ||||||||| ||||| || |||||| ||||||||||||        |||||||||||||  |||| ||||     
T  47321258 ttaaagttgcattgaaaattgtgcgagtgagaaaagttagagtatttattgagggtaaagttggaagaaaaaaaattaaagttgtattgaaaatgtaaag 47321159  T
Q  181 tgacattcattttaaaacaa 200  Q
    ||||||||||||||||||||    
T  47321158 tgacattcattttaaaacaa 47321139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 54512217 - 54512095
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||| ||||| ||||  ||||||||||| ||||||||||||| |||||||||||||| ||| ||||||           |||||||||||||| |||||     
T  54512217 cacatattaagaaatgaaatgaaataataattggatataacgtttttactaaactgctcttactttataagaaaatgacaaaattaaagttgcattgaac 54512118  T
Q  100 attgtgtgagagaaaagttggag 122  Q
    |||||||||||||||||||||||    
T  54512117 attgtgtgagagaaaagttggag 54512095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 24259724 - 24259606
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| |||||||||||||||||||  |||||||||||| || |||||| ||||||||||||        ||||||||| ||| ||||| ||||     
T  24259724 ttaaagttgcattgaaaattgtgtgagagagaaaagttggagtatttattgagggtaaagttggaag-aaaaaaattaaagttgcattggaaatgtaaag 24259626  T
Q  181 tgacattcattttaaaacaa 200  Q
    ||||||||||||| ||||||    
T  24259625 tgacattcattttgaaacaa 24259606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 30022177 - 30022115
Alignment:
Q  85 aaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||| |||||||||||||||||||||||||| |||| || |||||| ||||||||||||    
T  30022177 aaagttgcattgaaaattgtgtgagagaaaagttgaagtatttattgagggtaaagttggaag 30022115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 54092058 - 54091953
Alignment:
Q  94 ttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatttt 193  Q
    ||||||||| || |||||||||||||||||| || |||||| ||||||||  ||        |||||||||||||| |||| ||||||||||||||||||    
T  54092058 ttgaaaattatgcgagagaaaagttggagtatttattgagggtaaagttgagagaaaaaaa-ttaaagttgtattaaaaatctaaattgacattcatttt 54091960  T
Q  194 aaaacaa 200  Q
    |||||||    
T  54091959 aaaacaa 54091953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 22212452 - 22212336
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||  ||||||||||||||||| ||| ||||||||| || |||||| ||||||||||||        |||||||| |||| ||||| |||  ||    
T  22212452 ttaaagttgtattgaaaattgtgtgagaaaaatgttggagtatttattgagggtaaagttggaag-aaaaaaattaaagttatattggaaatgtaaggtg 22212354  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||||||||||    
T  22212353 acattcattttaaaacaa 22212336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 29840169 - 29840026
Alignment:
Q  101 ttgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||| |||||||||||||||||| || |||||| ||||||||| ||        ||||||||||||| ||||| |||| ||||||||||||| ||||||    
T  29840169 ttgtgcgagagaaaagttggagtatttattgagggtaaagttgggagaaaaaaaattaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 29840070  T
Q  201 nnnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
             |||||||||||| | ||||| |||| |||||||||    
T  29840069 ttttttttggctaaagtgacagtcattttgaaacggagggagta 29840026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 31941671 - 31941553
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaa--gttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| ||||||||| ||||||||| ||  ||||||||| || |||||| ||||||||||||        |||||||||||||  |||| ||||     
T  31941671 ttaaagttgcattgaaaattatgtgagagagaatagttggagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattgaaaatgtaaag 31941573  T
Q  181 tgacattcattttaaaacaa 200  Q
    ||||||||||||||||||||    
T  31941572 tgacattcattttaaaacaa 31941553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 43421082 - 43421197
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa-----------aattaaagttgctttgaaa 99  Q
    |||| ||||| |||| ||||||||||||||||||||||||  ||||||||||| ||| ||| ||||||||           |||||||||||| |||||     
T  43421082 cacaaattaagaaatggaatgaaataatcattggatataatacttttactaaattgctcttactttataagaaaaagacaaaattaaagttgcattgaat 43421181  T
Q  100 attgtgtgagagaaaa 115  Q
    ||||||||||||||||    
T  43421182 attgtgtgagagaaaa 43421197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 45520419 - 45520611
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaaatt 102  Q
    ||||||| |||| |||| ||||||||||| || ||||| |||||||||| |||||||| | ||||           ||| |||||||||| || ||||||    
T  45520419 agattaagaaatggaataaaataatcattagacataacacttttactaagctgcccttacattataagaataagacaaacttaaagttgcattaaaaatt 45520518  T
Q  103 gtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaa 197  Q
    || ||||||||||||| ||||| || |  ||| ||||||||||||        |||||||||||||  |||| |||| |||||||||||||||||    
T  45520519 gtatgagagaaaagtttgagtatttatcaaggataaagttggaag--aaaaaattaaagttgtattgaaaatgtaaagtgacattcattttaaaa 45520611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 45889676 - 45889610
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| |||||||||||||||||||  |||||||||||| || |||||| |||||| |||||    
T  45889676 ttaaagttgcattgaaaattgtgtgagagagaaaagttggagtatttattgagggtaaagtaggaag 45889610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 19282469 - 19282567
Alignment:
Q  102 tgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    |||| |||||||||||| ||||| || |||| | ||||||||||||        ||||||||||||| ||||| |||| ||||||||||||| ||||||    
T  19282469 tgtgagagagaaaagttagagtatttattgaaggtaaagttggaagaaaaaaaattaaagttgtattggaaatgtaaagtgacattcattttgaaacaa 19282567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 29289932 - 29290044
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    ||||| |||| |||||||||||||||||||||||||| |||| || |||||| ||||||| ||||        || ||||||||||  ||||||||| ||    
T  29289932 ttaaaattgcattgaaaattgtgtgagagaaaagttgaagtatttattgagg-taaagtttgaag-aaaaaaattgaagttgtattgaaaatataaagtg 29290029  T
Q  183 acattcattttaaaa 197  Q
    ||||| |||||||||    
T  29290030 acattaattttaaaa 29290044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 38692505 - 38692464
Alignment:
Q  79 aaaattaaagttgctttgaaaattgtgtgagagaaaagttgg 120  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  38692505 aaaattaaagttgcattgaaaattgtgcgagagaaaagttgg 38692464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 38761867 - 38761925
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttg 143  Q
    |||||||| | ||||||||||||  ||||||||||||||||| || |||||||||||||||    
T  38761867 ttaaagttaccttgaaaattgtg--agagaaaagttggagtatttattgaggttaaagttg 38761925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 15501129 - 15501231
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaaattgtgtgagagaaaag 116  Q
    ||||||||||||||| || |||||  |||||||||||||||||| |||||||| |           |||||||||| || ||||||||||||||||||||    
T  15501129 aatgaaataatcattagacataacatttttactaaactgcccttactttataagaaaaatacaaacttaaagttgcattaaaaattgtgtgagagaaaag 15501228  T
Q  117 ttg 119  Q
    |||    
T  15501229 ttg 15501231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 39671147 - 39671183
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttg 119  Q
    |||||||||| ||||||||||||||||||||||||||    
T  39671147 ttaaagttgcattgaaaattgtgtgagagaaaagttg 39671183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 200
Target Start/End: Original strand, 51434299 - 51434414
Alignment:
Q  86 aagttgctttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattga 183  Q
    ||||||| |||||||||||||||||||  ||||||  |||| || |||||| ||||||| ||||        ||||||||| ||||||||| ||||  ||    
T  51434299 aagttgcattgaaaattgtgtgagagagaaaagttaaagtatttattgagggtaaagtttgaaggaaaaaa-ttaaagttgcattagaaatgtaaagcga 51434397  T
Q  184 cattcattttaaaacaa 200  Q
    |||||||||||||||||    
T  51434398 cattcattttaaaacaa 51434414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 56556366 - 56556461
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa-nnnnnnnnngctaaagtgacactgattttaaaacagagggagtaataaat 250  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||          |||||||||||||| ||||||||||||| |||||| |||||    
T  56556366 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaattttttttttgctaaagtgacactcattttaaaacagatggagtactaaat 56556461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 17499756 - 17499822
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| ||||||||||| |||||  |||||||| ||||| || |||||| ||||||||||||    
T  17499756 ttaaagttgcattgaaaattgtatgagagagaaaagtttgagtatttattgagggtaaagttggaag 17499822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 31987484 - 31987433
Alignment:
Q  16 attaaaaaattgaatgaaataatcattggatataacgcttttactaaactgc 67  Q
    ||||||||||  ||||||||||||||| || ||||| |||||||||||||||    
T  31987484 attaaaaaataaaatgaaataatcattagagataacacttttactaaactgc 31987433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 34124408 - 34124342
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||  |||||||||||||||||||  |||||| ||||| || |||||| ||||||||||||    
T  34124408 ttaaagttgtattgaaaattgtgtgagagagaaaagtttgagtatttattgagggtaaagttggaag 34124342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 45049820 - 45049761
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagtt 142  Q
    |||||||||| |||||||||||| || |||||||| ||||||||| |||||  |||||||    
T  45049820 ttaaagttgcattgaaaattgtgcgaaagaaaagtaggagtacttattgagagtaaagtt 45049761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 32141028 - 32141065
Alignment:
Q  84 taaagttgctttgaaaattgtgtgagagaaaagttgga 121  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  32141028 taaatttgcattgaaaattgtgtgagagaaaagttgga 32141065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 36805408 - 36805531
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    ||||||||||  |||  ||||||||||||||| || ||||| |||||||||||||| ||||  |||||           ||| |||||||||  ||||||    
T  36805408 cacagattaaggaatgaaatgaaataatcattagacataacacttttactaaactgtccttagtttatatgaaaaagacaaacttaaagttgtattgaaa 36805507  T
Q  100 attgtgtgagagaaaagttggagt 123  Q
    ||||||||||| ||||||||||||    
T  36805508 attgtgtgagaaaaaagttggagt 36805531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 42672500 - 42672439
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttgg 144  Q
    |||||||||  ||||||||||||| ||||| |||||| |||| || |||||| |||||||||    
T  42672500 ttaaagttgtattgaaaattgtgtaagagagaagttgaagtatttattgagggtaaagttgg 42672439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 6231696 - 6231652
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||||| || ||||||||| ||||||||||||| ||||||    
T  6231696 ttaaagttgtactataaatataaagtgacattcattttgaaacaa 6231652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 11835222 - 11835186
Alignment:
Q  77 ataaaattaaagttgctttgaaaattgtgtgagagaa 113  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  11835222 ataaacttaaagttgcattgaaaattgtgtgagagaa 11835186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 15501258 - 15501302
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||    
T  15501258 ttaaagttgtattggaaatgtaaagtgacattcattttcaaacaa 15501302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 7612694 - 7612452
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||           |||||||||||||| ||||||    
T  7612694 cacagattaagaaatagaatgaaataatcattggatataacgc-tttactaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 7612596  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaaca 199  Q
    ||||||||||||||||||||||||| || || ||| ||||||||||||        |||| ||||||||  |||| |||| |||||||||||||||||||    
T  7612595 attgtgtgagagaaaagttggagtatttatttagggtaaagttggaag-agaaaacttaatgttgtattgaaaatgtaaagtgacattcattttaaaaca 7612497  T
Q  200 annnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    |         | |||||||||||| |||||||||  |||||||||    
T  7612496 atttttttttgttaaagtgacactcattttaaaagggagggagta 7612452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 9022593 - 9022349
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttata-----------aaattaaa-gttgctttgaa 98  Q
    ||||||||||||||| ||||||| |||||||| || ||||| ||||||||||||||| |||| ||||||           || ||||| ||||| |||||    
T  9022593 cacagattaaaaaatggaatgaattaatcattagacataacacttttactaaactgcacttgttttatatgaaaaagacaaacttaaaagttgcattgaa 9022494  T
Q  99 aattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaac 198  Q
    |||||||||||| ||||||||||||| || |||||| ||||||||||||        ||||||||||||| ||||  |||| ||||||||||||||||||    
T  9022493 aattgtgtgagaaaaaagttggagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattggaaacgtaaagtgacattcattttaaaac 9022395  T
Q  199 aannnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    ||         |||||| ||| ||| |||||||||| |||||||||    
T  9022394 aattctttttggctaaaatgatactcattttaaaacggagggagta 9022349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 11257654 - 11257540
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| |||||||||||||||||||||||||| |||| || ||||| |||||||||||||        |||||||||||||| |||| |||| ||    
T  11257654 ttaaagttgcattgaaaattgtgtgagagaaaagttgaagtatttattgagattaaagttggaag---aaaaattaaagttgtattaaaaatgtaaagtg 11257558  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||||||||||    
T  11257557 acattcattttaaaacaa 11257540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 14541784 - 14541900
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| |||||||||||| ||||||||||||| |||| || || ||| ||||||||||||        ||||||||||||||||||| |||| ||    
T  14541784 ttaaagttgcattgaaaattgtgagagagaaaagttgaagtatttattaaggataaagttggaag-aaaaaaattaaagttgtattagaaatgtaaagtg 14541882  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||| ||||||    
T  14541883 acattcattttgaaacaa 14541900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 2067894 - 2067828
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||| |||| |||||||||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  2067894 agattaagaaatggaatgaaataatcatttgatataacgcttttattaaactgcccttactttataa 2067828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 83 - 245
Target Start/End: Complemental strand, 22601249 - 22601089
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||| ||||||||||| ||||||||| || | |||| ||||||||||||        ||||||||||||| ||||| |||| ||    
T  22601249 ttaaagttgcattgaaaattctgtgagagaaaggttggagtatttatcgagggtaaagttggaag--aaacaattaaagttgtattggaaatgtaaagtg 22601152  T
Q  183 acattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagtaa 245  Q
    ||||||||||| ||||||         |||||||||||||| || || |||| ||||||||||    
T  22601151 acattcattttgaaacaaaactttttggctaaagtgacactcatcttgaaacggagggagtaa 22601089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 34461620 - 34461737
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgag--agaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| ||||||||||||||||  ||||||||||||||  || |||||| ||||||||||||        ||||||||||||| ||||| ||||     
T  34461620 ttaaagttgcattgaaaattgtgtgagacagaaaagttggagtttttattgagggtaaagttggaagaaaaaaaattaaagttgtattggaaatgtaaag 34461719  T
Q  181 tgacattcattttaaaac 198  Q
    ||||||||||||| ||||    
T  34461720 tgacattcattttgaaac 34461737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 24732144 - 24732087
Alignment:
Q  12 acagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgccc 69  Q
    ||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  24732144 acagattaagaaattgaatgaaatagtcattggatataacacttttactaaactgccc 24732087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 27109859 - 27109975
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||| ||||||||||||||||||||| ||||| || |||||| ||||||||||||        ||||||||||||| |||||  ||| ||    
T  27109859 ttaaagttgcattggaaattgtgtgagagaaaagttagagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattggaaatggaaagtg 27109957  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||| ||||||    
T  27109958 acattcattttgaaacaa 27109975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 5588523 - 5588628
Alignment:
Q  94 ttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatttt 193  Q
    |||||| |||||||||||||||||| ||||| || |||| | ||||||||||||        ||||||||||||| ||||| |||||||||||||| |||    
T  5588523 ttgaaatttgtgtgagagaaaagtttgagtatttattgaaggtaaagttggaagaaaaaaa-ttaaagttgtattggaaatgtaaattgacattcagttt 5588621  T
Q  194 aaaacaa 200  Q
    |||||||    
T  5588622 aaaacaa 5588628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 6839404 - 6839335
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||||||| |||||||||||||||| || ||||| ||||||||||| |||| || ||||||||    
T  6839404 cacagattaaaaaatggaatgaaataatcattagacataacacttttactaaattgcctttactttataa 6839335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 42946240 - 42946120
Alignment:
Q  79 aaaattaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataa 178  Q
    |||||| ||||||| || ||||||||||||||||||| || ||||| || |||||| |||| ||| |||        |||||||||||||| |||| |||    
T  42946240 aaaattgaagttgcattaaaaattgtgtgagagaaaaattagagtatttattgagggtaaaattgaaagaaaaaaa-ttaaagttgtattaaaaatgtaa 42946142  T
Q  179 attgacattcattttaaaacaa 200  Q
    | ||||||||||||||||||||    
T  42946141 aatgacattcattttaaaacaa 42946120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 32326680 - 32326873
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttata-----------aaattaaagttgctttgaaa 99  Q
    ||||||||||  |||  ||||||||||||||| ||  |||| |||||||||||||||||||| ||||||           || |||||||||| ||||||    
T  32326680 cacagattaaggaatgaaatgaaataatcattagacgtaacacttttactaaactgcccttgttttatatgaaaaagacaaatttaaagttgcattgaaa 32326779  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatttt 193  Q
    ||||||||||| ||||||||||||| || ||| || |||| ||| |||        |||||||||||||  |||| |||| ||||||| |||||    
T  32326780 attgtgtgagaaaaaagttggagtatttattgtgggtaaaattgaaaggaaaaaaattaaagttgtattgaaaatgtaaagtgacatttatttt 32326873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 1774170 - 1774259
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagtaa 245  Q
    |||||||||||||  |||| |||||||||||||||||||||||||         |||||||||||||| |||||||||| || |||||||    
T  1774170 ttaaagttgtattgaaaatgtaaattgacattcattttaaaacaattttttttggctaaagtgacactcattttaaaacggaaggagtaa 1774259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 3095468 - 3095656
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttg--ctttataaaattaaagttgctttgaaaattgtgtga 108  Q
    |||| |||||||||| ||||||||||||||||  |||| || ||||||||||||||||   |      | ||| |||||||||| ||||||| |||| ||    
T  3095468 cacaaattaaaaaatagaatgaaataatcattaaatatgacacttttactaaactgccaaaggaaaagacaaacttaaagttgcattgaaaagtgtgcga 3095567  T
Q  109 gagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaac 198  Q
    ||||||||||| |||| || |||||| ||||||||| ||        |||||||||||||  |||| |||| | ||||||||||||||||    
T  3095568 gagaaaagttgaagtatttattgagggtaaagttgggag-gaaaaaattaaagttgtattgaaaatgtaaagtaacattcattttaaaac 3095656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 8382520 - 8382629
Alignment:
Q  87 agttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacat 186  Q
    |||||| |||||||||||||||||||||||||||||||  | |||||| ||||||||  ||        |||||||||||||  |||| |||| ||||||    
T  8382520 agttgcattgaaaattgtgtgagagaaaagttggagtatatattgagggtaaagttgagag-aaaaaaattaaagttgtattgaaaatgtaaagtgacat 8382618  T
Q  187 tcattttaaaa 197  Q
    |||||||||||    
T  8382619 tcattttaaaa 8382629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 32661419 - 32661358
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttgg 144  Q
    |||||||||  ||||||||||||||||||||||||| ||||| || |||||| |||||||||    
T  32661419 ttaaagttgtattgaaaattgtgtgagagaaaagttagagtatttattgagggtaaagttgg 32661358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 11336067 - 11336107
Alignment:
Q  79 aaaattaaagttgctttgaaaattgtgtgagagaaaagttg 119  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  11336067 aaaattaaagttgcattgaaaattgtgtgagagaaaagttg 11336107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 2812961 - 2812915
Alignment:
Q  23 aattgaatgaaataatcattggatataacgcttttactaaactgccc 69  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||    
T  2812961 aattgaatgaaataatcattagacataacacttttactaaactgccc 2812915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 7129395 - 7129353
Alignment:
Q  79 aaaattaaagttgctttgaaaattgtgtgagagaaaagttgga 121  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  7129395 aaaattaaagttgcattggaaattgtgtgagagaaaagttgga 7129353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 38329010 - 38329067
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcc 68  Q
    ||||||||||  ||| |||||||||||||||| || ||||| ||||||||||||||||    
T  38329010 cacagattaaggaatggaatgaaataatcattagacataacacttttactaaactgcc 38329067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 27109775 - 27109827
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaa 63  Q
    |||| ||||| |||| |||||||||||||||| |||||||| |||||||||||    
T  27109775 cacatattaagaaatagaatgaaataatcattagatataacacttttactaaa 27109827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 38329140 - 38329184
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||    
T  38329140 ttaaagttgtattgaaaatataaagtgacattcattttaaaacaa 38329184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 26439080 - 26439045
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagtt 118  Q
    |||||||||| |||||||||||||||||||||||||    
T  26439080 ttaaagttgcattgaaaattgtgtgagagaaaagtt 26439045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 29931275 - 29931314
Alignment:
Q  79 aaaattaaagttgctttgaaaattgtgtgagagaaaagtt 118  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  29931275 aaaattaaagttgcattgaaaattatgtgagagaaaagtt 29931314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 32737961 - 32737903
Alignment:
Q  12 acagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgccctt 71  Q
    ||||||||| |||||||||||||| |||||| |||||||| |||||  ||||||||||||    
T  32737961 acagattaagaaattgaatgaaat-atcattagatataacacttttgttaaactgccctt 32737903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 18666584 - 18666621
Alignment:
Q  84 taaagttgctttgaaaattgtgtgagagaaaagttgga 121  Q
    ||||||||| || |||||||||||||||||||||||||    
T  18666584 taaagttgcattaaaaattgtgtgagagaaaagttgga 18666621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 30789049 - 30789008
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagta 124  Q
    |||||||||  ||||||||| |||||||||||||||||||||    
T  30789049 ttaaagttgtattgaaaattatgtgagagaaaagttggagta 30789008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 35052513 - 35052425
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    ||||||||||||| ||||| ||||  |||||||||||||||||||         ||||||| |||||| ||||| |||| |||||||||    
T  35052513 ttaaagttgtattggaaatgtaaaacgacattcattttaaaacaatttttttttgctaaagcgacactcattttgaaacggagggagta 35052425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 39970439 - 39970398
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagta 124  Q
    |||||||||| |||||||||||| |||||||||||| |||||    
T  39970439 ttaaagttgcattgaaaattgtgcgagagaaaagtttgagta 39970398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 41790228 - 41790265
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcatttt 193  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  41790228 ttaaagttgtattagaaatgtaaagtgacattcatttt 41790265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 45187251 - 45187320
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||  |||  ||||||||||||||| || || || |||||||||||||| ||||| |||||||    
T  45187251 cacagattaaggaatataatgaaataatcattagacatgacacttttactaaactgtccttgttttataa 45187320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 5044265 - 5044329
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||  || |||||||||||| |||||||||| |||| || |||||  ||||||||||||    
T  5044265 ttaaagttgtattaaaaattgtgtgatagaaaagttgaagtatttattgagaataaagttggaag 5044329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 7129451 - 7129419
Alignment:
Q  34 ataatcattggatataacgcttttactaaactg 66  Q
    |||||||||| ||||||||||||||||||||||    
T  7129451 ataatcattgaatataacgcttttactaaactg 7129419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 16209055 - 16209019
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttg 119  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  16209055 ttaaagttgcattgaaaattatgtgagagaaaagttg 16209019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 41414947 - 41414911
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttg 119  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  41414947 ttaaagttgcattgaaaattgtgtgagaaaaaagttg 41414911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 41790179 - 41790215
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttg 119  Q
    |||||||||  ||||||||||||||||||||||||||    
T  41790179 ttaaagttggattgaaaattgtgtgagagaaaagttg 41790215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 4840682 - 4840874
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||| ||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||           |||||||||||||| ||||||    
T  4840682 cacatattaagaaatggaatgaaataatcattggatataacgtttttactaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 4840781  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatttt 193  Q
    | |||||| |||||||||| ||||| || |||||| ||||||||||||        ||||||||||||| ||||| |||| |||||||||||||    
T  4840782 actgtgtgggagaaaagtttgagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattggaaatgtaaagtgacattcatttt 4840874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 7743598 - 7743401
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaa 99  Q
    ||||||||||| |||| ||||||||||||||  |||||||| ||||||||||  ||||||| |||||||| |           |||||||||| ||||||    
T  7743598 cacagattaaagaattaaatgaaataatcatcagatataacacttttactaagttgcccttactttataagaaaaagacaaatttaaagttgcattgaaa 7743499  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaac 198  Q
    |||||||||||||||||||||| || || |||||| ||||||||||||        ||||||||||||| ||||| |||| ||||||||||||||||||    
T  7743498 attgtgtgagagaaaagttggactatttattgagggtaaagttggaag-aaaaagattaaagttgtattggaaatgtaaagtgacattcattttaaaac 7743401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 40410640 - 40410518
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||||||||| |||| |||||| ||||||||||||||||||||||||| |||||||||||| ||||||           |||||||||||||| ||||||    
T  40410640 cacagattaagaaatggaatgacataatcattggatataacgcttttattaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 40410541  T
Q  100 attgtgtgagagaaaagttggag 122  Q
    ||||||| |||||||||||||||    
T  40410540 attgtgtcagagaaaagttggag 40410518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 1298738 - 1298927
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa-----------aattaaagttgctttgaaaatt 102  Q
    ||||||| ||||  |||||||||||||||| |||||||| |||||||||| ||||||| ||||||||           |||||||||||| |||||||||    
T  1298738 agattaagaaataaaatgaaataatcattgaatataacgtttttactaaattgcccttactttataagaaaaagacaaaattaaagttgcattgaaaatt 1298837  T
Q  103 gtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatttt 193  Q
     ||||||||||||||||||| | || |||||| ||||||| || |        ||||||||||||||||||| |||| |||||||||||||    
T  1298838 atgtgagagaaaagttggagaatttattgaggataaagttcgatg-agaaaaattaaagttgtattagaaatgtaaagtgacattcatttt 1298927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 4766184 - 4766288
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataa-----------aattaaagttgctttgaaaattgtgtgagagaaaag 116  Q
    ||||||||||||||||||||||||| | ||||||||||||| || ||||||||           |||||||||||| |||||||||||||||||||||||    
T  4766184 aatgaaataatcattggatataacgttattactaaactgcctttactttataagaaaaagacaaaattaaagttgcattgaaaattgtgtgagagaaaag 4766283  T
Q  117 ttgga 121  Q
    |||||    
T  4766284 ttgga 4766288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 244
Target Start/End: Complemental strand, 2459889 - 2459727
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| |||||||||||||||||||  |||||||||||| || |||||| ||||||||||||        ||||||||| ||| ||||| ||||     
T  2459889 ttaaagttgcattgaaaattgtgtgagagagaaaagttggagtatttattgagggtaaagttggaag-aaaaaaattaaagttgcattggaaatgtaaag 2459791  T
Q  181 tgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
     |||||||||||||||||||         |||||||  ||||| |||||||||| |||||||||    
T  2459790 cgacattcattttaaaacaatttttttttgctaaagcaacactcattttaaaacggagggagta 2459727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 37106976 - 37106912
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| ||||||||||||||||||||||||||||||| || || ||| ||||||||||||    
T  37106976 ttaaagttgcattgaaaattgtgtgagagaaaagttggagtatttattaagggtaaagttggaag 37106912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 33093490 - 33093317
Alignment:
Q  77 ataaaattaaagttgctttgaaaattgtgtga--gagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaat 174  Q
    ||||| |||||||||| |||||||||||||||  ||||||||||||| || || |||||| ||||||||||||        |||||||||||||  ||||    
T  33093490 ataaacttaaagttgcattgaaaattgtgtgagggagaaaagttggaatatttattgagggtaaagttggaag-aaaaaaattaaagttgtattgaaaat 33093392  T
Q  175 ataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagtaataaa 249  Q
     |||| ||||||||||||| ||||||         |  |||| |||||| |||||||||| ||||||||||||||    
T  33093391 gtaaagtgacattcattttgaaacaaatttttttagtcaaagagacactcattttaaaacggagggagtaataaa 33093317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 43460961 - 43460823
Alignment:
Q  17 ttaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa-----------aattaaagttgctttgaaaattgtg 105  Q
    |||| |||| ||||||||||||||||||||| |   ||||||||||||||||||| ||||||||           |||||||||||  ||||||||| ||    
T  43460961 ttaagaaatggaatgaaataatcattggataca---cttttactaaactgcccttactttataaggaaaagacaaaattaaagttgtattgaaaattatg 43460865  T
Q  106 tgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||||||| |||| || |||||| ||| ||||||||    
T  43460864 tgagagaaaagttgaagtatttattgagggtaacgttggaag 43460823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 244
Target Start/End: Complemental strand, 4536685 - 4536528
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| |||||||||||||||||   ||||| ||||| || |||||| ||||||||| ||        ||||||||||||| ||||| |||| ||    
T  4536685 ttaaagttgcattgaaaattgtgtgaga---aagttagagtatttgttgagggtaaagttgggagaaaaaaa-ttaaagttgtattggaaatgtaaagtg 4536590  T
Q  183 acattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    ||||||||||| ||||||         |||||||||||||| ||||| |||| |||||||||    
T  4536589 acattcattttgaaacaattttttttggctaaagtgacactcattttgaaacggagggagta 4536528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 44228659 - 44228609
Alignment:
Q  15 gattaaaaaattgaatgaaataatcattggatataacgcttttactaaact 65  Q
    ||||||||||| |||||||||||||||| |||||||| |||||||||||||    
T  44228659 gattaaaaaatggaatgaaataatcattagatataacacttttactaaact 44228609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 14378219 - 14378272
Alignment:
Q  27 gaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||| ||||||||    
T  14378219 gaatgaaataatcatttaatataacacttttactaaactgcccttactttataa 14378272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 16316827 - 16316718
Alignment:
Q  79 aaaattaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataa 178  Q
    |||||||||||||| ||||||||||||||||| |||||||||| || || ||||   |||| |||||||        ||||||||||||| |||||||||    
T  16316827 aaaattaaagttgcattgaaaattgtgtgagataaaagttggaatatttattgaaagtaaatttggaag-aaaaaaattaaagttgtattggaaatataa 16316729  T
Q  179 attgacattca 189  Q
    | |||||||||    
T  16316728 agtgacattca 16316718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 24775373 - 24775242
Alignment:
Q  24 attgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaaattgtgtgagaga 112  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||| ||| ||||||           ||| ||||||||   |||||||||||||||||||    
T  24775373 attgaatgaaataatcattagatataacacttttactaaaatgctcttactttataagaaaaaaacaaacttaaagttatattgaaaattgtgtgagaga 24775274  T
Q  113 aaagttggagtactttttgaggttaaagttgg 144  Q
    ||||||| |||| || |||||| |||| ||||    
T  24775273 aaagttgaagtatttattgagggtaaacttgg 24775242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 43388695 - 43388759
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||  ||||||||| ||||||||||||||| ||||| || |||||| ||||||||||||    
T  43388695 ttaaagttgtattgaaaattatgtgagagaaaagtttgagtatttattgagggtaaagttggaag 43388759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 10580894 - 10581012
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||  |||||||||||||||||  |||||||| ||||| || |||||| ||||||||||||        |||||||||||||  |||||||||     
T  10580894 ttaaagttgtattgaaaattgtgtgagagagaaaagtttgagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattgaaaatataaag 10580992  T
Q  181 tgacattcattttaaaacaa 200  Q
    ||| ||||||||| ||||||    
T  10580993 tgatattcattttgaaacaa 10581012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 29795156 - 29795276
Alignment:
Q  13 cagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaaat 101  Q
    ||||||||  ||| |||||||||||||||| || ||||  |||||||||||||||||||  ||||||| |           |||||||||| ||||||||    
T  29795156 cagattaatgaatggaatgaaataatcattagacataatacttttactaaactgcccttattttataagaaaaagacaactttaaagttgcattgaaaat 29795255  T
Q  102 tgtgtgagagaaaagttggag 122  Q
    ||||||| |||||||||||||    
T  29795256 tgtgtgaaagaaaagttggag 29795276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 34225864 - 34225826
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttgga 121  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  34225864 ttaaagttgcattgaaaattgtgtgagagaaaagttgga 34225826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 1360291 - 1360175
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||||| | |||||||||||| |||| || |||||| |||| |||| ||        ||||||||||||| |||||  ||| ||    
T  1360291 ttaaagttgcattgaaaattgtttaagagaaaagttgaagtatttattgagggtaaaattgggag-aaaaaaattaaagttgtattggaaatgcaaagtg 1360193  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||| ||||||    
T  1360192 acattcattttgaaacaa 1360175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 36360347 - 36360399
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||||||| || ||||| |||||||||||||||||||  |||||||    
T  36360347 aatgaaataatcattagacataacacttttactaaactgcccttattttataa 36360399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 41984534 - 41984468
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtg--agagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| ||||||||||||||  ||||||||||||||||| || || | | ||||||||||||    
T  41984534 ttaaagttgcattgaaaattgtgtgtgagagaaaagttggagtatttattaaaggtaaagttggaag 41984468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 1381916 - 1381867
Alignment:
Q  31 gaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    |||||||||||| || ||||| ||||||||||||||| ||| ||||||||    
T  1381916 gaaataatcattagacataacacttttactaaactgctcttactttataa 1381867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 29795300 - 29795388
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||         |||||||||||| | |||||||||| || ||||||    
T  29795300 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaaatatttttggctaaagtgacattcattttaaaacggatggagta 29795388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 37107061 - 37106992
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    |||| ||||| |||| |||||||||||| ||| || | ||| ||||||||||| ||||||| ||||||||    
T  37107061 cacacattaagaaatggaatgaaataattatttgacacaacacttttactaaattgcccttactttataa 37106992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 42970004 - 42969967
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttgg 120  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  42970004 ttaaagttgcattgaaaattgtgtgagaaaaaagttgg 42969967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 6592007 - 6591963
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||||||| ||||| |||| ||| ||||||||||||||||    
T  6592007 ttaaagttgtattggaaatgtaaaatgatattcattttaaaacaa 6591963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 25332660 - 25332620
Alignment:
Q  107 gagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||||||||||| || |||||| ||||||||||||    
T  25332660 gagagaaaagttggagtatttattgaggataaagttggaag 25332620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 40987254 - 40987306
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||||||| || ||||| ||||||||||| || |||| ||||||||    
T  40987254 aatgaaataatcattagacataacacttttactaaattgtccttactttataa 40987306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 62)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 26965463 - 26965585
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||           |||||||||||||| ||||||    
T  26965463 cacagattaagaaataaaatgaaataatcattggatataacgcttttactaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 26965562  T
Q  100 attgtgtgagagaaaagttggag 122  Q
    |||||||||||||||||||||||    
T  26965563 attgtgtgagagaaaagttggag 26965585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 37225553 - 37225793
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa-----------aattaaagttgctttgaaaatt 102  Q
    ||||||| ||||  |||||||||||||||||||||||  |||||||||||||| |||| ||||||||           |||||||||||| |||||||||    
T  37225553 agattaagaaatacaatgaaataatcattggatataatacttttactaaactgtccttactttataagaaaaagacaaaattaaagttgcattgaaaatt 37225652  T
Q  103 gtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaacaann 202  Q
    |||||||||||||||| | ||| || |||||| ||||||||||||        ||||||||||||| ||||| |||| ||||||||||||| ||||||      
T  37225653 gtgtgagagaaaagttagcgtatttattgagggtaaagttggaag-aaaagaattaaagttgtattggaaatgtaaagtgacattcattttgaaacaatt 37225751  T
Q  203 nnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
           ||||||  |||||| |||||||||| |||||||||    
T  37225752 ttttttagctaaaacgacactcattttaaaacggagggagta 37225793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 46362977 - 46363165
Alignment:
Q  23 aattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaaattgtgtgagag 111  Q
    |||||||||||||||||||| ||  ||||  ||||||||||||| |||| |||||||| |           |||||||||| ||| ||||||||||||||    
T  46362977 aattgaatgaaataatcattagacctaacatttttactaaactgtccttactttataagaaaaatacaaatttaaagttgcattgtaaattgtgtgagag 46363076  T
Q  112 aaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||||||| || |||||| ||||||||||||        |||||||||||||  |||| |||| ||||||||||||| ||||||    
T  46363077 aaaagttggagtatttattgagggtaaagttggaagaaaaaaaattaaagttgtattgaaaatgtaaagtgacattcattttgaaacaa 46363165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 53716184 - 53716082
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataa---------aattaaagttgctttgaaaattgtgtgagagaaaagtt 118  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||         |||||||||||| ||||||| |||||||||||||||||    
T  53716184 aatgaaataatcattggatataacgcttttactaaactgctcttactttataagaaaaagacaattaaagttgcattgaaaactgtgtgagagaaaagtt 53716085  T
Q  119 gga 121  Q
    |||    
T  53716084 gga 53716082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 34060063 - 34059943
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa---------aattaaagttgctttgaaaat 101  Q
    |||||||||| |||| |||||||||||| ||||||||||| | |||||||||||| ||||| ||||||||         |||||||||||| ||||||||    
T  34060063 cacagattaagaaatggaatgaaataataattggatataaagtttttactaaactacccttactttataagaaaaagacaattaaagttgcattgaaaat 34059964  T
Q  102 tgtgtgagagaaaagttggag 122  Q
    |||| ||||||||||||||||    
T  34059963 tgtgcgagagaaaagttggag 34059943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 38457658 - 38457513
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||| ||||| |||||||||||||||||||||  | ||||| |||||||||||||||| || ||||||           ||| ||||| |||| ||||||    
T  38457658 cacaaattaagaaattgaatgaaataatcattacacataacacttttactaaactgccattactttattagaaaaagataaacttaaaattgcattgaaa 38457559  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttgga 145  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||    
T  38457558 attgtgtgagagaaaagttggagtatttattgagggtaaagttgga 38457513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 647547 - 647694
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||||||||| ||||  ||||||||||||||| ||||||||  |||||||||||||||||| ||||||           ||| |||||||||| ||||||    
T  647547 cacagattaagaaatgaaatgaaataatcattagatataacagttttactaaactgcccttactttataagaaaaagacaaacttaaagttgcattgaaa 647646  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    ||| ||| ||||||||||| ||||| || |||||| ||||||||||||    
T  647647 attctgtaagagaaaagttagagtatttattgagggtaaagttggaag 647694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 3000868 - 3000751
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||||||||||||||||||||||||| || |||||| || |||||| ||        |||||||||||||  |||| |||| |     
T  3000868 ttaaagttgcattgaaaattgtgtgagagaaaagttggagtatttattgagggtagagttgggagaaaaaaaattaaagttgtattgaaaatgtaaagta 3000769  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||||||||||    
T  3000768 acattcattttaaaacaa 3000751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 790270 - 790152
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||| ||||| ||||  |||||||||||||||| ||||||||||||||||||||||||||| ||||||           |||||||||||||| ||| ||    
T  790270 cacatattaagaaatgtaatgaaataatcattgaatataacgcttttactaaactgcccttactttataagaaaaagtcaaaattaaagttgcattggaa 790171  T
Q  100 attgtgtgagagaaaagtt 118  Q
    |||||||||||||||||||    
T  790170 attgtgtgagagaaaagtt 790152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 27027848 - 27027732
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||||||||||||||||||||||||| || || ||| ||||||| ||||        ||||| ||||||| ||||| |||||||    
T  27027848 ttaaagttgcattgaaaattgtgtgagagaaaagttggagtatttattaaggataaagtttgaag-aaaaaaattaaatttgtattggaaatgtaaattg 27027750  T
Q  183 acattcattttaaaacaa 200  Q
    ||||| ||||| ||||||    
T  27027749 acattaattttgaaacaa 27027732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 43580677 - 43580474
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-------------aaaattaaagttgctttga 97  Q
    ||||||||||  ||| ||||||||||||||||  |||||||  ||||||||||||||||||| |||||             ||| |||||||||| ||||    
T  43580677 cacagattaaggaatagaatgaaataatcattacatataacatttttactaaactgcccttgttttatatatgaaaaagacaaatttaaagttgcattga 43580578  T
Q  98 aaattgtgtgag-agaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaa 196  Q
    |||||||||||| | ||||||||||||| || || ||| ||||||||||||        |||||||||||||  |||| |||| ||||||| ||||| ||    
T  43580577 aaattgtgtgagaaaaaaagttggagtatttattaagggtaaagttggaagaaaaaaaattaaagttgtattgaaaatgtaaagtgacatttattttgaa 43580478  T
Q  197 acaa 200  Q
    ||||    
T  43580477 acaa 43580474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 54933241 - 54933359
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| |||||||||||||||||  |||||||||||||| || |||||| ||||||||||||        ||||||||| ||| ||||| ||||     
T  54933241 ttaaagttgcattgaaaattgtgtgagagagaaaagttggagtatttattgagggtaaagttggaag-aaaaaaattaaagttgcattggaaatgtaaag 54933339  T
Q  181 tgacattcattttaaaacaa 200  Q
    ||||||||||||| ||||||    
T  54933340 tgacattcattttgaaacaa 54933359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 4392019 - 4391958
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttgg 144  Q
    |||||||||| |||||||||||| |||||||||||||||||| || |||||| |||||||||    
T  4392019 ttaaagttgcattgaaaattgtgcgagagaaaagttggagtatttattgagggtaaagttgg 4391958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 22731029 - 22730924
Alignment:
Q  94 ttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatttt 193  Q
    |||||| |||||||||||||||||| ||||| || |||| | ||||||||||||        ||||||||||||| ||||| |||||||||||||| |||    
T  22731029 ttgaaatttgtgtgagagaaaagtttgagtatttattgaaggtaaagttggaagaaaaaaa-ttaaagttgtattggaaatgtaaattgacattcagttt 22730931  T
Q  194 aaaacaa 200  Q
    |||||||    
T  22730930 aaaacaa 22730924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 83410 - 83295
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| |||||||||| |||||||||||||| ||||| ||  ||||| ||||||||||||        |||||||||||||  |||| |||| ||    
T  83410 ttaaagttgcattgaaaattgcgtgagagaaaagttagagtatttaatgagggtaaagttggaag--aaaaaattaaagttgtattgaaaatgtaaaatg 83313  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||| ||||||    
T  83312 acattcattttgaaacaa 83295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 13485915 - 13486010
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagtaataaata 251  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||||         |||||||||||||| ||||| |||| ||||||||| ||||||    
T  13485915 ttaaagttgtattggaaatgtaaattgacattcattttgaaacaaattgtttttgctaaagtgacactcattttgaaactgagggagtattaaata 13486010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 42791477 - 42791380
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa----ttaaagttgctttgaaaattgtgtgagagaaaagttgga 121  Q
    ||||||||||||||| || ||||  ||||||||||| | ||||| ||| ||||||    |||||||||| ||||||||| ||||||||||||||||||    
T  42791477 aatgaaataatcattagacataatacttttactaaattacccttacttcataaaaaaatttaaagttgcattgaaaattatgtgagagaaaagttgga 42791380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 25061874 - 25061771
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttat---------aaaattaaagttgctttgaaaattgtgtgagagaaaagtt 118  Q
    ||||||||||||||| || ||||| ||||||||||||| ||||| ||||||         ||| |||||||||| ||||||||||| |||||||||||||    
T  25061874 aatgaaataatcattagacataacacttttactaaactacccttactttataagaaaaacaaacttaaagttgcattgaaaattgtatgagagaaaagtt 25061775  T
Q  119 ggag 122  Q
    ||||    
T  25061774 ggag 25061771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 15514763 - 15514880
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||| || ||||||||||||||||||  | |||| | ||||||||| ||        ||||||||||||| ||||| |||| ||    
T  15514763 ttaaagttgcattgaaaattatgcgagagaaaagttggagtatctattgaaggtaaagttgggagaaaaaaaattaaagttgtattggaaatgtaaagtg 15514862  T
Q  183 acattcattttaaaacaa 200  Q
    ||||| |||| |||||||    
T  15514863 acatttatttgaaaacaa 15514880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 19552730 - 19552611
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacg-cttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaa 98  Q
    |||| ||||| ||||  |||||||||||||||||||||||||  ||||||||||||| |||| ||||||           |||||||||||||| |||||    
T  19552730 cacaaattaagaaatgaaatgaaataatcattggatataacgttttttactaaactgtccttactttataagaaaaatacaaaattaaagttgcattgaa 19552631  T
Q  99 aattgtgtgagagaaaagtt 118  Q
    |||| |||||||||||||||    
T  19552630 aattctgtgagagaaaagtt 19552611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 44645461 - 44645389
Alignment:
Q  77 ataaaattaaagttgctttgaaaattgtgt--gagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    ||||| |||||||||| ||||||||| |||  |||||||||||||||||| || |||||| ||||||||||||    
T  44645461 ataaacttaaagttgcattgaaaattatgtaagagagaaaagttggagtatttattgagggtaaagttggaag 44645389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 35239556 - 35239438
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaaatt 102  Q
    ||||||||||||||||| ||||||||||| |  |||||  ||||||||||||| |||| ||||||           ||| ||||||||||  ||||||||    
T  35239556 agattaaaaaattgaataaaataatcattaggcataacatttttactaaactgtccttactttataagaaaaagacaaacttaaagttgcagtgaaaatt 35239457  T
Q  103 gtgtgagagaaaagttgga 121  Q
    |||||||||||||||||||    
T  35239456 gtgtgagagaaaagttgga 35239438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 44854508 - 44854365
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaaatt 102  Q
    |||||||  |||||||||||||||||||| || |  || ||||||||||||||||||| |||||||| |           |||||||||| |||||||||    
T  44854508 agattaatgaattgaatgaaataatcattagaca--acacttttactaaactgcccttactttataagaaaaatacaaacttaaagttgcattgaaaatt 44854411  T
Q  103 gtg-tgagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    ||  ||||||||||||||||||| || |||||| |||| |||||||    
T  44854410 gtactgagagaaaagttggagtatttattgagggtaaaattggaag 44854365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 1340967 - 1341006
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggag 122  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  1340967 ttaaagttgcattgaaaattgtgtgagagaaaagttggag 1341006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 36771614 - 36771653
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggag 122  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  36771614 ttaaagttgcattgaaaattgtgtgagagaaaagttggag 36771653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 43687919 - 43687985
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||| | |||||||||||||||||  |||||||||||||| || |||||| ||||||||||||    
T  43687919 ttaaagtttcattgaaaattgtgtgagagagaaaagttggagtatttattgagggtaaagttggaag 43687985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 2567970 - 2568082
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaaatt 102  Q
    |||||||  |||||||||||||||||||| |||||||| ||||||| ||| || |||| |||||||| |           |||||||||| |||||||||    
T  2567970 agattaaggaattgaatgaaataatcattagatataacacttttacaaaaatgtccttactttataagaaaaagacaaacttaaagttgcattgaaaatt 2568069  T
Q  103 gtgtgagagaaaa 115  Q
    |||||||||||||    
T  2568070 gtgtgagagaaaa 2568082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 2662446 - 2662562
Alignment:
Q  10 gcacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaa 98  Q
    |||||||||||| |||  ||||||||||||||| || ||||| ||||||||||| |||||||  ||||||| |           |||||||||| |||||    
T  2662446 gcacagattaaagaatcaaatgaaataatcattagacataacacttttactaaattgcccttattttataagaaaaagacaaatttaaagttgcattgaa 2662545  T
Q  99 aattgtgtgagagaaaa 115  Q
    |||||||||||||||||    
T  2662546 aattgtgtgagagaaaa 2662562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 27039442 - 27039401
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagta 124  Q
    |||||||||| |||||||||||||||||| ||||||||||||    
T  27039442 ttaaagttgcattgaaaattgtgtgagaggaaagttggagta 27039401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 245
Target Start/End: Complemental strand, 43169451 - 43169288
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||  |||||||||||||||||||  |||||| ||||| || |||| | ||||||| ||||        ||||||||||||| ||||| ||||     
T  43169451 ttaaagttgtattgaaaattgtgtgagagataaaagtttgagtatttattgaaggtaaagttagaagaaaaaaa-ttaaagttgtattggaaatgtaaaa 43169353  T
Q  181 tgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagtaa 245  Q
    ||||||||||||| ||||||          |||||| |||||| |||||||||| ||||||||||    
T  43169352 tgacattcattttgaaacaattttttttgactaaagcgacactcattttaaaacggagggagtaa 43169288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 20512532 - 20512651
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||  |||||||||||||||||  |||||||||||||| || |||| | ||||||||||||        ||||||||| |||  |||| ||||     
T  20512532 ttaaagttgtattgaaaattgtgtgagagagaaaagttggagtatttattgaaggtaaagttggaagaaaaaaatttaaagttgcattgaaaatgtaaag 20512631  T
Q  181 tgacattcattttaaaacaa 200  Q
     |||||||||||| ||||||    
T  20512632 cgacattcattttgaaacaa 20512651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 32303952 - 32304059
Alignment:
Q  94 ttgaaaattgtgt--gagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatt 191  Q
    |||||||||||||  |||||||||||| ||||| || |||||| ||||||||||||        |||||||||||||  |||| |||| |||||||||||    
T  32303952 ttgaaaattgtgtaagagagaaaagtttgagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattgaaaatgtaaagtgacattcatt 32304050  T
Q  192 ttaaaacaa 200  Q
    | |||||||    
T  32304051 tcaaaacaa 32304059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 50420373 - 50420258
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| |||||||||| | |||||||||||| ||||| || ||||   ||||||||||||        |||||||||||||| |||| |||| ||    
T  50420373 ttaaagttgcattgaaaattgcgcgagagaaaagttagagtatttattgaaagtaaagttggaag--aaaaaattaaagttgtattaaaaatgtaaaatg 50420276  T
Q  183 acattcattttaaaacaa 200  Q
    ||||| ||||| ||||||    
T  50420275 acatttatttttaaacaa 50420258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 2988646 - 2988712
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| |||||||||||| ||||  |||||||| ||||| || |||||| ||||||||||||    
T  2988646 ttaaagttgcattgaaaattgtgcgagagagaaaagtttgagtatttattgagggtaaagttggaag 2988712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 27483231 - 27483270
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggag 122  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  27483231 ttaaagttgcattgaaaattatgtgagagaaaagttggag 27483270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 36541608 - 36541542
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| | |||||||||||||||||  ||||||||| || || |||||| ||||||||||||    
T  36541608 ttaaagttgcatcgaaaattgtgtgagagagaaaagttggaatatttattgagggtaaagttggaag 36541542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 41287193 - 41287078
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaag-nnnnnnnnttaaagttgtattagaaatataaatt 181  Q
    |||||||||| ||||||||||||||||| ||  ||| ||||| || ||||||  |||||||||||         ||||||||||||| ||||| |||| |    
T  41287193 ttaaagttgcattgaaaattgtgtgagaaaatggtttgagtatttattgagggaaaagttggaagaaaaaaaaattaaagttgtattggaaatgtaaagt 41287094  T
Q  182 gacattcattttaaaa 197  Q
    ||||| ||||||||||    
T  41287093 gacatccattttaaaa 41287078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 43599868 - 43599907
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggag 122  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  43599868 ttaaagttgcattaaaaattgtgtgagagaaaagttggag 43599907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 44648365 - 44648432
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat 78  Q
    ||||||||||  |||  ||||||||||||||| || ||||| |||||||||||||||| || ||||||    
T  44648365 cacagattaaggaatgaaatgaaataatcattagacataacacttttactaaactgcctttactttat 44648432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 44648512 - 44648555
Alignment:
Q  157 taaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    |||||||||||| ||||| |||| ||||||||||||||||||||    
T  44648512 taaagttgtattggaaatgtaaagtgacattcattttaaaacaa 44648555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 54261532 - 54261466
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||  |||||||||||||||||||  |||||| ||||| || |||||| ||||||||||||    
T  54261532 ttaaagttgtattgaaaattgtgtgagagagaaaagttagagtatttattgagggtaaagttggaag 54261466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 5244700 - 5244638
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttgga 145  Q
    |||||||||| ||||||||  |||||||||||| || ||||| || |||||| ||||||||||    
T  5244700 ttaaagttgcattgaaaataatgtgagagaaaaattagagtatttattgagggtaaagttgga 5244638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 16240691 - 16240654
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttgg 120  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  16240691 ttaaagttgcattgaaaattgtgcgagagaaaagttgg 16240654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 25722497 - 25722557
Alignment:
Q  83 ttaaagttgctttgaaaattgtgt--gagagaaaagttggagtactttttgaggttaaagt 141  Q
    |||||||||| |||||||||||||  |||||||||||||||||| || || ||| ||||||    
T  25722497 ttaaagttgcattgaaaattgtgtgagagagaaaagttggagtatttatttagggtaaagt 25722557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 35099404 - 35099465
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttgg 144  Q
    ||||| |||| |||||||||||| |||||||||||| ||||| || || ||| |||||||||    
T  35099404 ttaaaattgcattgaaaattgtgcgagagaaaagtttgagtatttattaagggtaaagttgg 35099465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 35239429 - 35239392
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcatttt 193  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  35239429 ttaaagttgtattagaaatgtaaagtgacattcatttt 35239392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 43736842 - 43736879
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaact 65  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  43736842 aatgaaataatcattagatataacacttttactaaact 43736879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 4476398 - 4476434
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttg 119  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  4476398 ttaaagttgcattgaaaattgtgtgagaaaaaagttg 4476434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 5244782 - 5244730
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaa 63  Q
    |||| ||||| ||||||||||||||||||||| || ||||| |||||| ||||    
T  5244782 cacatattaagaaattgaatgaaataatcattagacataacacttttattaaa 5244730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 19552583 - 19552539
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    |||||||||||||  |||| |||| ||||||||||||||||||||    
T  19552583 ttaaagttgtattgaaaatgtaaagtgacattcattttaaaacaa 19552539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 25061747 - 25061703
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||    
T  25061747 ttaaagttgtattggaaatgtaaagtggcattcattttaaaacaa 25061703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 27483165 - 27483217
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||||||| || ||||| ||||||||||| | ||||| ||||||||    
T  27483165 aatgaaataatcattagacataacacttttactaaatttcccttactttataa 27483217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 31291011 - 31291047
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttg 119  Q
    ||||||||||  |||||||||||||||||||||||||    
T  31291011 ttaaagttgcaatgaaaattgtgtgagagaaaagttg 31291047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 31291074 - 31291118
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||||||||||||||||| |||| ||| ||||||||||| ||||    
T  31291074 ttaaagttgtattagaaatgtaaagtgatattcattttaagacaa 31291118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 34059919 - 34059875
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    |||||||||||||  |||| |||| ||||||||||||||||||||    
T  34059919 ttaaagttgtattgaaaatgtaaaatgacattcattttaaaacaa 34059875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 36771677 - 36771721
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    |||||||||||||  |||| |||| ||||||||||||||||||||    
T  36771677 ttaaagttgtattgtaaatgtaaagtgacattcattttaaaacaa 36771721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 38165633 - 38165685
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    |||||||||||||||  | ||||| |||||||||||||| |||| ||||||||    
T  38165633 aatgaaataatcattaaacataacacttttactaaactgtccttactttataa 38165685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 40049081 - 40049121
Alignment:
Q  210 gctaaagtgacactgattttaaaacagagggagtaataaat 250  Q
    ||||||| |||||| |||||||||| |||||||||||||||    
T  40049081 gctaaagcgacactaattttaaaacggagggagtaataaat 40049121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 42740338 - 42740302
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttg 119  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  42740338 ttaaagttgcattgaaaattgtgtgagaaaaaagttg 42740302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 42857046 - 42857114
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttata 79  Q
    ||||||||||  |||  ||||||||||||||| || |||||  |||||||||||||| |||| ||||||    
T  42857046 cacagattaaggaatcaaatgaaataatcattagacataacatttttactaaactgcacttgttttata 42857114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 48169433 - 48169401
Alignment:
Q  212 taaagtgacactgattttaaaacagagggagta 244  Q
    |||||||||||| ||||||||||||||||||||    
T  48169433 taaagtgacactcattttaaaacagagggagta 48169401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 50420420 - 50420380
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataac 51  Q
    ||||||||||||||| |||||||||||||||| || |||||    
T  50420420 cacagattaaaaaatagaatgaaataatcatttgacataac 50420380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 4742304 - 4742421
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||  ||||||||||||||||| ||||||||||||| || |||||| ||||||||||||        |||||||||||||||||||||||| ||    
T  4742304 ttaaagttgaattgaaaattgtgtgagaaaaaagttggagtatttattgagggtaaagttggaagaaaaaaaattaaagttgtattagaaatataaagtg 4742403  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||| ||||||    
T  4742404 acattcattttgaaacaa 4742421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 4751568 - 4751685
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||  ||||||||||||||||| ||||||||||||| || |||||| ||||||||||||        |||||||||||||||||||||||| ||    
T  4751568 ttaaagttgaattgaaaattgtgtgagaaaaaagttggagtatttattgagggtaaagttggaagaaaaaaaattaaagttgtattagaaatataaagtg 4751667  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||| ||||||    
T  4751668 acattcattttgaaacaa 4751685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 4967446 - 4967517
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa 82  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4967446 cacagattaagaaatggaatgaaataatcattggatataacgcttttactaaactgcccttactttataaaa 4967517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 166604 - 166847
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttata-----------aaattaaagttgctttgaaa 99  Q
    ||||||||||  |||  ||||||||||||||| || ||||| ||||||||||||||||||||  |||||           || |||||||||| ||||||    
T  166604 cacagattaaggaatgaaatgaaataatcattagaaataacacttttactaaactgcccttgtattatatgaaaaagacaaacttaaagttgcattgaaa 166703  T
Q  100 attgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaaaca 199  Q
    ||||||||||| ||||||||||||| || |||||| ||||||||||||        ||||||||||||| ||||| |||| ||||||||||||| |||||    
T  166704 attgtgtgagaaaaaagttggagtatttattgagggtaaagttggaag-aaaaaaattaaagttgtattggaaatgtaaagtgacattcattttgaaaca 166802  T
Q  200 annnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    |         ||||||| |||||| ||||| |||| |||||||||    
T  166803 atttttttttgctaaagcgacactcattttgaaacggagggagta 166847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 38982183 - 38982299
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| |||||||||||| |||||||||||| ||||| || |||||| ||||||||| ||        ||||||||||||| |||||||||| ||    
T  38982183 ttaaagttgcattgaaaattgtgcgagagaaaagtttgagtatttattgagggtaaagttgggag-aaaaaaattaaagttgtattggaaatataaagtg 38982281  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||||||||||    
T  38982282 acattcattttaaaacaa 38982299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 31889917 - 31889796
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttat-----------aaaattaaagttgctttgaaa 99  Q
    |||||||||| |||| |||||||||||| |||| |||||||| ||| |||||||||||||| ||||||           |||||||||||||| ||||||    
T  31889917 cacagattaagaaatggaatgaaataattattgaatataacgttttcactaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 31889818  T
Q  100 attgtgtgagagaaaagttgga 121  Q
    ||||||||||||||||||||||    
T  31889817 attgtgtgagagaaaagttgga 31889796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 15400370 - 15400174
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgccc-ttgctttat-----------aaaattaaagttgctttgaa 98  Q
    |||||||||||||||||||||||||||| ||| |||||||| ||||||||||| | ||| || ||||||           ||| |||||||| | ||| |    
T  15400370 cacagattaaaaaattgaatgaaataattattagatataacacttttactaaaattccctttactttataagaaaaaggaaaacttaaagtttcattgga 15400271  T
Q  99 aattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaaa 196  Q
    |||||| ||||||||||||| ||||| || |||||| ||||||||||||        ||||||||||||| ||||| |||| ||||||||||||||||    
T  15400270 aattgtatgagagaaaagtttgagtatttattgaggataaagttggaag-aagaaaattaaagttgtattggaaatgtaaagtgacattcattttaaa 15400174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 14980006 - 14980075
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    |||||||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  14980006 cacagattaagaaatggaatgaaataatcattggatataacacttttaccaaactgcccttactttataa 14980075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 12992176 - 12992063
Alignment:
Q  84 taaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattga 183  Q
    ||||||||| ||||||||||||  ||||||||||||||||| || |||||| |||||||||||         ||||||||||||||||||| |||| |||    
T  12992176 taaagttgcattgaaaattgtgcaagagaaaagttggagtatttattgaggataaagttggaa---aaaaaattaaagttgtattagaaatgtaaaatga 12992080  T
Q  184 cattcattttaaaacaa 200  Q
    |||||||||| ||||||    
T  12992079 cattcattttgaaacaa 12992063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 13066827 - 13066712
Alignment:
Q  84 taaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattga 183  Q
    ||||||||| ||||||||||||  ||||||||||||||||| || |||||| |||||||||||         ||||||||||||| ||||| |||| |||    
T  13066827 taaagttgcattgaaaattgtgcaagagaaaagttggagtatttattgagggtaaagttggaa-aaaaaaaattaaagttgtattggaaatgtaaaatga 13066729  T
Q  184 cattcattttaaaacaa 200  Q
    |||||||||| ||||||    
T  13066728 cattcattttgaaacaa 13066712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 12167565 - 12167688
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaa 99  Q
    |||| ||||| ||||||||||||||||||||| || | ||| ||||||||||||||||||| |||||||| |           |||||||||| ||||||    
T  12167565 cacaaattaagaaattgaatgaaataatcattagacaaaacacttttactaaactgcccttactttataagaaaaggtcaaacttaaagttgcattgaaa 12167664  T
Q  100 att-gtgtgagagaaaagttggag 122  Q
    ||| ||||||||||||||||||||    
T  12167665 atttgtgtgagagaaaagttggag 12167688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 16886250 - 16886152
Alignment:
Q  28 aatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa----ttaaagttgctttgaaaattgtgtgagagaaaagttggag 122  Q
    ||||||||||| ||| ||  |||| | ||||||||||||||||| |||||||| |    |||||||||| ||||||||||||||| |||||||||||||    
T  16886250 aatgaaataattattagacgtaacacatttactaaactgcccttactttataacaaaacttaaagttgcattgaaaattgtgtgatagaaaagttggag 16886152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 34171278 - 34171163
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| ||||||||| ||||||||||||||| ||||| || |||| | |||||||||||         |||||||||||||  |||| |||| ||    
T  34171278 ttaaagttgcattgaaaattctgtgagagaaaagtttgagtatttattgaaggtaaagttggaa--aaaaaaattaaagttgtattgaaaatgtaaagtg 34171181  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||||||||||    
T  34171180 acattcattttaaaacaa 34171163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 4011618 - 4011736
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa-----------aattaaagttgctttgaaaatt 102  Q
    ||||||| |||| |||| ||||||||||||||||||||| |||| ||||| |||||||  |||||||           |||||||||||| |||||||||    
T  4011618 agattaagaaatggaatcaaataatcattggatataacgttttttctaaaatgcccttattttataagaaaaagataaaattaaagttgcattgaaaatt 4011717  T
Q  103 gtgtgagagaaaagttgga 121  Q
    |||||||| ||||||||||    
T  4011718 gtgtgagaaaaaagttgga 4011736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 17674393 - 17674264
Alignment:
Q  16 attaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaatta---aagttgctttgaaaattgtgtgagaga 112  Q
    ||||||||||  |||||||||||||||  | |||||  ||||| |||||||||||| ||||||||  ||    ||||||  | |||||||||||||||||    
T  17674393 attaaaaaatgaaatgaaataatcattaaacataacatttttattaaactgcccttactttataattttttttaagttgtatagaaaattgtgtgagaga 17674294  T
Q  113 aaagttggagtactttttgaggttaaagtt 142  Q
    ||||||| |||| || |||||| |||||||    
T  17674293 aaagttgaagtatttattgaggataaagtt 17674264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 33585011 - 33585129
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgag--agaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| ||||||||||||||||  ||||||||||||||| || |||| | ||||||||||||        |||||||||||||  |||| ||||     
T  33585011 ttaaagttgcattgaaaattgtgtgagacagaaaagttggagtatttattgaaggtaaagttggaag-aaaaaaattaaagttgtattgaaaatgtaaag 33585109  T
Q  181 tgacattcattttaaaacaa 200  Q
    |||| |||||||||||||||    
T  33585110 tgacgttcattttaaaacaa 33585129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 42329582 - 42329700
Alignment:
Q  83 ttaaagttgctttgaaaattgtgt--gagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| |||||||||||||  ||||||||||||| |||| || || ||| ||||||||||||        ||||||||||||| ||||| ||||     
T  42329582 ttaaagttgcattgaaaattgtgtgagagagaaaagttgaagtatttattaagggtaaagttggaag-aaaaaaattaaagttgtattggaaatgtaaag 42329680  T
Q  181 tgacattcattttaaaacaa 200  Q
    ||||||||||||| ||||||    
T  42329681 tgacattcattttgaaacaa 42329700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 4371476 - 4371362
Alignment:
Q  85 aaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgac 184  Q
    |||||||| ||||||||||||||||||||||||| ||||| || |||||| ||||||| | ||        ||||||||||||| ||||| |||| ||||    
T  4371476 aaagttgcattgaaaattgtgtgagagaaaagtttgagtatttattgagggtaaagtttggag-aaaaaaattaaagttgtattggaaatgtaaagtgac 4371378  T
Q  185 attcattttaaaacaa 200  Q
     |||||||| ||||||    
T  4371377 gttcattttgaaacaa 4371362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 27810467 - 27810345
Alignment:
Q  77 ataaaattaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatat 176  Q
    ||||| |||||||||  ||||||||||||||||| ||||||| ||||| || |||||| |||||||| |||        |||||||||||||  |||| |    
T  27810467 ataaatttaaagttgtattgaaaattgtgtgagaaaaaagtttgagtatttattgaggataaagttgaaag-aaaaaaattaaagttgtattgaaaatgt 27810369  T
Q  177 aaattgacattcattttaaaacaa 200  Q
    ||| ||||||||||||| ||||||    
T  27810368 aaagtgacattcattttgaaacaa 27810345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 147
Target Start/End: Complemental strand, 39059987 - 39059856
Alignment:
Q  27 gaatgaaataatcattggatataacgcttttactaaactgcccttgctttata-----------aaattaaagttgctttgaaaattgtgtgagagaaaa 115  Q
    |||||||||||||||| || ||||| ||||||||||||| |||||| ||||||           || |||||||||| ||||||||||| ||||| ||||    
T  39059987 gaatgaaataatcattagacataacacttttactaaactacccttgttttatatgaaaaaaacaaacttaaagttgcattgaaaattgtatgagaaaaaa 39059888  T
Q  116 gttggagtactttttgaggttaaagttggaag 147  Q
     |||||||| || |||||| ||||||| ||||    
T  39059887 tttggagtatttattgagggtaaagttagaag 39059856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 43257815 - 43257884
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||| |||  ||||||||||||||| || ||||| ||| ||||||||||||||| ||||||||    
T  43257815 cacagattaaagaatgaaatgaaataatcattagacataacacttatactaaactgcccttactttataa 43257884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 793642 - 793760
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagaga--aaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    |||||||||| |||||||||||||||||||  ||||||  |||| || |||||| || |||||||||        ||||||||||||| ||||| ||||     
T  793642 ttaaagttgcattgaaaattgtgtgagagagaaaagtttaagtatttattgagggtagagttggaagaaaaaaa-ttaaagttgtattggaaatgtaaag 793740  T
Q  181 tgacattcattttaaaacaa 200  Q
    ||||||||||||| ||||||    
T  793741 tgacattcattttgaaacaa 793760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 4833669 - 4833735
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtga--gagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||| |||||||||||||||  |||||||||| ||||| || |||||| ||||||||||||    
T  4833669 ttaaagttgcattgaaaattgtgtgaaagagaaaagtttgagtatttattgagggtaaagttggaag 4833735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 29044841 - 29044770
Alignment:
Q  77 ataaaattaaagttgctttgaaaattgtgt-gagagaaaagttggagtactttttgaggttaaagttggaag 147  Q
    ||||| |||||||||| ||||||||||||| |||||||||||| ||| | || |||||| ||||||||||||    
T  29044841 ataaacttaaagttgcattgaaaattgtgtggagagaaaagtttgagcatttattgaggataaagttggaag 29044770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 36783470 - 36783431
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggag 122  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  36783470 ttaaagttgcattgaaaattgtgtgagagaaaagttggag 36783431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 32690770 - 32690878
Alignment:
Q  84 taaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattga 183  Q
    ||||||||| |||||||||||| ||||||||||||| |||| || |||||  ||||||||  ||        ||||||||||||| ||||| |||| |||    
T  32690770 taaagttgcattgaaaattgtgcgagagaaaagttgaagtatttattgagagtaaagttgagag-aaaaaaattaaagttgtatttgaaatgtaaagtga 32690868  T
Q  184 cattcatttt 193  Q
    ||||||||||    
T  32690869 cattcatttt 32690878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 27652357 - 27652419
Alignment:
Q  83 ttaaagttgctttgaaaattgtgt--gagagaaaagttggagtactttttgaggttaaagttg 143  Q
    |||||||||| |||||||||||||  ||||||||||||||| || || |||||| ||||||||    
T  27652357 ttaaagttgcattgaaaattgtgtgagagagaaaagttggattatttattgagggtaaagttg 27652419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 7731703 - 7731790
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    |||||||||| ||  ||||||||| ||||||||||||||||||||          ||||||||||||| ||||||||| ||||||||||    
T  7731703 ttaaagttgttttgaaaatataaagtgacattcattttaaaacaatttttttga-ctaaagtgacacttattttaaaatagagggagta 7731790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 8961066 - 8961107
Alignment:
Q  77 ataaaattaaagttgctttgaaaattgtgtgagagaaaagtt 118  Q
    ||||| ||||||||||  ||||||||||||||||||||||||    
T  8961066 ataaatttaaagttgcaatgaaaattgtgtgagagaaaagtt 8961107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 14980149 - 14980237
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaannnnnnnnngctaaagtgacactgattttaaaacagagggagta 244  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||         ||||||||||| || ||||| |||| |||||||||    
T  14980149 ttaaagttgtattggaaatgtaaagtgacattcattttgaaacaaatttttttagctaaagtgactctcattttgaaacggagggagta 14980237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 28640197 - 28640136
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttgg 144  Q
    |||||||||  |||||||||||  ||||||||||||| |||| || |||||| |||||||||    
T  28640197 ttaaagttgtattgaaaattgttcgagagaaaagttgaagtatttattgagggtaaagttgg 28640136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 29051622 - 29051663
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaa 197  Q
    ||||||||||||||||||  |||| |||||||||||||||||    
T  29051622 ttaaagttgtattagaaaggtaaagtgacattcattttaaaa 29051663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 34919933 - 34919864
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||  |||  ||| |||||||||||||| ||| |  |||||||||||||||||| ||||||||    
T  34919933 cacagattaaggaatgaaataaaataatcattggacatagcaattttactaaactgcccttactttataa 34919864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 36660623 - 36660554
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||||||  |||  ||||||||||||||| || ||||| ||||||||||| || |||| ||||||||    
T  36660623 cacagattaaggaatgaaatgaaataatcattagacataacacttttactaaaatgtccttactttataa 36660554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 1513094 - 1513043
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtga--gagaaaagttggagtactttttga 132  Q
    ||||||||||||||||||||||| ||  |||||||||| |||||||| ||||    
T  1513094 ttaaagttgctttgaaaattgtgagagggagaaaagttagagtacttattga 1513043  T

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Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 7388291 - 7388335
Alignment:
Q  156 ttaaagttgtattagaaatataaattgacattcattttaaaacaa 200  Q
    ||||| |||||||  ||||||||| ||||||||||||||||||||    
T  7388291 ttaaaattgtattgaaaatataaagtgacattcattttaaaacaa 7388335  T

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Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 8755570 - 8755530
Alignment:
Q  210 gctaaagtgacactgattttaaaacagagggagtaataaat 250  Q
    |||||||||| ||| |||||||||| |||||||||||||||    
T  8755570 gctaaagtgatacttattttaaaacggagggagtaataaat 8755530  T

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Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 33693846 - 33693810
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttg 119  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  33693846 ttaaagttgcattgaaaattgtgtgagaaaaaagttg 33693810  T

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Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 41845344 - 41845380
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttg 119  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  41845344 ttaaagttgcattgaaaattgtgtgatagaaaagttg 41845380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 1737 - 1548
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa-----------aattaaagttgctttgaaaatt 102  Q
    ||||||| ||||  ||||||||||| ||||||||||||| |||||||||| ||||||| ||||||||           |||||||||||| |||||||||    
T  1737 agattaagaaatataatgaaataattattggatataacgtttttactaaattgcccttactttataagaaaaagacaaaattaaagttgcattgaaaatt 1638  T
Q  103 gtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatttt 193  Q
     |||||||||||||||||||   || |||||| |||||||||| |        ||||||||||||| |||||||||| |||||||||||||    
T  1637 atgtgagagaaaagttggagattttattgaggataaagttggatg-acaaaaattaaagttgtattggaaatataaagtgacattcatttt 1548  T

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Target: scaffold0238 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 15995 - 16188
Alignment:
Q  11 cacagattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa----------ttaaagttgctttgaaaa 100  Q
    |||| ||||||||||| |||||||||||||||  |||||||  |||||||||||| || || ||||||||||          |||||||||| |||||||    
T  15995 cacatattaaaaaattaaatgaaataatcattatatataacatttttactaaactacctttactttataaaaaatgacaaacttaaagttgcattgaaaa 16094  T
Q  101 ttgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcattttaa 195  Q
    |||||||||||||| |||||| || || |||||| ||||||| ||||        |||||||||||||| |||||||||  |||||| |||||||    
T  16095 ttgtgtgagagaaaggttggaatatttattgagggtaaagtttgaag-aaaaaaattaaagttgtattaaaaatataaagagacatttattttaa 16188  T

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Target: scaffold0519 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 7738 - 7852
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattg 182  Q
    |||||||||| |||||||||||||||||||||||||| |||| || ||||| |||||||||||||        | |||||||||||| |||| |||| ||    
T  7738 ttaaagttgcattgaaaattgtgtgagagaaaagttgaagtatttattgagattaaagttggaag--aaaaattaaaagttgtatta-aaatgtaaagtg 7834  T
Q  183 acattcattttaaaacaa 200  Q
    ||||||||||||||||||    
T  7835 acattcattttaaaacaa 7852  T

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Target: scaffold0886 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 4158 - 4263
Alignment:
Q  94 ttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaattgacattcatttt 193  Q
    ||||||||| ||||||||||||||||||||| || |||||| ||||||||||||        ||||| ||||||||||||| |||| | ||||| |||||    
T  4158 ttgaaaattatgtgagagaaaagttggagtatttattgaggataaagttggaag-aaaaaaattaaaattgtattagaaatgtaaagtaacatttatttt 4256  T
Q  194 aaaacaa 200  Q
    |||||||    
T  4257 aaaacaa 4263  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 321842 - 321724
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagag--aaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataaat 180  Q
    ||||| |||| ||||||||||||||||||  ||||||| ||||| || |||||| ||||||||||||        ||||||||||||| ||||| ||||     
T  321842 ttaaaattgcattgaaaattgtgtgagagcgaaaagtttgagtaattattgagggtaaagttggaag-aaaaaaattaaagttgtattggaaatgtaaag 321744  T
Q  181 tgacattcattttaaaacaa 200  Q
     |||||||||||||||||||    
T  321743 cgacattcattttaaaacaa 321724  T

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Target: scaffold0580 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 1768 - 1702
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||| ||||  ||||||||||||||||||||||||  ||||||||||||| |||| ||||||||    
T  1768 agattaagaaatgaaatgaaataatcattggatataacatttttactaaactgaccttactttataa 1702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 9507 - 9441
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataa 80  Q
    ||||||| ||||  ||||||||||||||||||||||||  ||||||||||||| |||| ||||||||    
T  9507 agattaagaaatgaaatgaaataatcattggatataacatttttactaaactgaccttactttataa 9441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 70491 - 70557
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgaga--gaaaagttggagtactttttgaggttaaagttggaag 147  Q
    |||||||||  |||||||||||||||||  |||||||||||||| || |||||| ||||||||||||    
T  70491 ttaaagttgtattgaaaattgtgtgagagagaaaagttggagtatttattgagggtaaagttggaag 70557  T

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Target: scaffold0072 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 12040 - 12154
Alignment:
Q  14 agattaaaaaattgaatgaaataatcattggatataacgcttttactaaactgcccttgctttataaaa-----------ttaaagttgctttgaaaatt 102  Q
    |||||||  ||| |||||||||||||||| || ||||| |||||||||||||||| || |||||||| |           |||||||||| |||||||||    
T  12040 agattaaggaatggaatgaaataatcattagacataacacttttactaaactgcc-ttactttataagaaaaagacaaacttaaagttgcattgaaaatt 12138  T
Q  103 gtgtgagagaaaagtt 118  Q
    ||||||||||||||||    
T  12139 gtgtgagagaaaagtt 12154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 13093 - 13213
Alignment:
Q  79 aaaattaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttggaagnnnnnnnnttaaagttgtattagaaatataa 178  Q
    |||||||||||| | ||||||||||||   ||||||||||| |||| || |||||| ||||||||| ||        ||||| ||||||| ||||| |||    
T  13093 aaaattaaagttacattgaaaattgtgccggagaaaagttgaagtatttattgagggtaaagttgggag-aaaaaaattaaaattgtattggaaatgtaa 13191  T
Q  179 attgacattcattttaaaacaa 200  Q
    | |||| |||||||||||||||    
T  13192 agtgacgttcattttaaaacaa 13213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 158214 - 158154
Alignment:
Q  83 ttaaagttgctttgaaaattgtgtgagagaaaagttggagtactttttgaggttaaagttg 143  Q
    |||||||||| ||||||||| || ||||||||||||| |||| || |||||| ||||||||    
T  158214 ttaaagttgcattgaaaattatgcgagagaaaagttgtagtatttattgagggtaaagttg 158154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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